mRNA_L-elsbetiae_contig8544.17579.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8544.17579.1
Unique NamemRNA_L-elsbetiae_contig8544.17579.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A6P6C600_PTEVA (DNA-directed RNA polymerase n=1 Tax=Pteropus vampyrus TaxID=132908 RepID=A0A6P6C600_PTEVA)

HSP 1 Score: 70.5 bits (171), Expect = 5.160e-12
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 3 
Query:  555 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK 677
            IVPQ DMPF   GICP++IMNPHGFPSRMTVGK +EL+AGK
Sbjct:   14 IVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGK 54
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BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: D7G075_ECTSI (DNA-directed RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G075_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.210e-11
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 3 
Query:  555 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK 677
            IVPQ DMPFA  GICP+LIMNPHGFPSRMTVGK VELVAGK
Sbjct:  225 IVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGK 265
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BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A7S3JVT2_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVT2_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.150e-11
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 3 
Query:  408 DTHVIGMGGPGGVYGRRERGPSTSSRYSSGRPGDQRWETQVLLATRAHAIVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK 677
            DTH+I       V  R+ R P    +++S R G +             AIVPQ DMPF+  G+CP+LIMNPHGFPSRMTVGK +ELVAGK
Sbjct:  991 DTHLIK------VMIRQMRRPEVGDKFAS-RHGQK---------GVCGAIVPQEDMPFSDTGVCPDLIMNPHGFPSRMTVGKIIELVAGK 1064
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BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.230e-11
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 3 
Query:  555 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK 677
            IVPQ DMPF+  GICP+LIMNPHGFPSRMTVGK +EL+AGK
Sbjct:  955 IVPQADMPFSEMGICPDLIMNPHGFPSRMTVGKMIELIAGK 995
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BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A5J4VU80_9EUKA (DNA-directed RNA polymerase subunit beta n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4VU80_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 5.670e-11
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  555 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK--VRYGTIVREGT 710
            IVPQ DMPF   GICP+LIMNPHG+PSRMTVGK +ELVAGK  V  GT  R+GT
Sbjct:  929 IVPQEDMPFTDQGICPDLIMNPHGYPSRMTVGKLIELVAGKAAVNEGTF-RDGT 981
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BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A397SYK3_9GLOM (DNA-directed RNA polymerase subunit beta n=15 Tax=Glomeromycetes TaxID=214506 RepID=A0A397SYK3_9GLOM)

HSP 1 Score: 73.2 bits (178), Expect = 5.700e-11
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 3 
Query:  555 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK-------VRYGT 692
            IVPQ DMPFA  GICP++IMNPHGFPSRMTVGK +EL+AGK       ++YGT
Sbjct:  946 IVPQEDMPFADSGICPDIIMNPHGFPSRMTVGKMIELLAGKAGVLKGELQYGT 998
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BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A5A8CMB6_CAFRO (DNA-directed RNA polymerase subunit beta n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CMB6_CAFRO)

HSP 1 Score: 72.8 bits (177), Expect = 7.930e-11
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 3 
Query:  555 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGKV-------RYGT 692
            IVPQ D+PF   G+CP++IMNPHGFPSRMTVGK +EL+AGK        RYGT
Sbjct: 1214 IVPQTDLPFTDEGVCPDMIMNPHGFPSRMTVGKMIELIAGKAGLQDGKRRYGT 1266
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BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A8J6A225_GALPY (DNA-directed RNA polymerase n=1 Tax=Galemys pyrenaicus TaxID=202257 RepID=A0A8J6A225_GALPY)

HSP 1 Score: 70.5 bits (171), Expect = 8.120e-11
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 3 
Query:  555 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK 677
            IVPQ DMPF   GICP++IMNPHGFPSRMTVGK +EL+AGK
Sbjct:   10 IVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGK 50
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BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A7S3JBM4_9SPIT (DNA-directed RNA polymerase (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JBM4_9SPIT)

HSP 1 Score: 69.7 bits (169), Expect = 9.970e-11
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 3 
Query:  555 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGKV-------RYGT 692
            IVPQ DMPFA  G CP+LIMNPHGFPSRMT+GK +EL++GK        +YGT
Sbjct:   72 IVPQEDMPFAENGWCPDLIMNPHGFPSRMTIGKMMELISGKAGVLNGDFKYGT 124
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BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A2P8YKY9_BLAGE (DNA-directed RNA polymerase n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8YKY9_BLAGE)

HSP 1 Score: 70.9 bits (172), Expect = 1.020e-10
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:  453 RRERGPSTSSRYSSGRPGDQRWETQVLLATRAHAIVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK 677
            R+ R P    ++SS R G +    ++L A     IV Q DMPF   GICP++IMNPHGFPSRMTVGK +EL+AGK
Sbjct:  129 RQTRRPEIGDKFSS-RHGQKGVTVKILFAG---LIVEQEDMPFNDMGICPDMIMNPHGFPSRMTVGKLIELLAGK 199
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P6C600_PTEVA5.160e-1278.05DNA-directed RNA polymerase n=1 Tax=Pteropus vampy... [more]
D7G075_ECTSI1.210e-1187.80DNA-directed RNA polymerase n=2 Tax=Ectocarpus Tax... [more]
A0A7S3JVT2_9STRA3.150e-1150.00DNA-directed RNA polymerase subunit beta (Fragment... [more]
A0A835Z565_9STRA4.230e-1180.49DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A5J4VU80_9EUKA5.670e-1172.22DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A397SYK3_9GLOM5.700e-1167.92DNA-directed RNA polymerase subunit beta n=15 Tax=... [more]
A0A5A8CMB6_CAFRO7.930e-1164.15DNA-directed RNA polymerase subunit beta n=3 Tax=S... [more]
A0A8J6A225_GALPY8.120e-1178.05DNA-directed RNA polymerase n=1 Tax=Galemys pyrena... [more]
A0A7S3JBM4_9SPIT9.970e-1164.15DNA-directed RNA polymerase (Fragment) n=1 Tax=Eup... [more]
A0A2P8YKY9_BLAGE1.020e-1053.33DNA-directed RNA polymerase n=1 Tax=Blattella germ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8544contigL-elsbetiae_contig8544:6435..8253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog2880.D7G075
Preferred namePOLR3B
KEGG rclassRC02795
KEGG koko:K03010,ko:K03021
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009553,GO:0009561,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048229,GO:0048518,GO:0048583,GO:0048584,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0051239,GO:0051240,GO:0055029,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0215@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons2
Model size791
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8544.17579.1prot_L-elsbetiae_contig8544.17579.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8544 6435..7828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816937.1411083-CDS-L-elsbetiae_contig8544:6434..67111622816937.1411083-CDS-L-elsbetiae_contig8544:6434..6711Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8544 6435..6711 -
1691683925.7184436-CDS-L-elsbetiae_contig8544:6434..67111691683925.7184436-CDS-L-elsbetiae_contig8544:6434..6711Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8544 6435..6711 -
1622816937.1523514-CDS-L-elsbetiae_contig8544:7739..78281622816937.1523514-CDS-L-elsbetiae_contig8544:7739..7828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8544 7740..7828 -
1691683925.7364488-CDS-L-elsbetiae_contig8544:7739..78281691683925.7364488-CDS-L-elsbetiae_contig8544:7739..7828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8544 7740..7828 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816937.1641107-UTR-L-elsbetiae_contig8544:7828..82531622816937.1641107-UTR-L-elsbetiae_contig8544:7828..8253Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8544 7829..8253 -
1691683925.7480266-UTR-L-elsbetiae_contig8544:7828..82531691683925.7480266-UTR-L-elsbetiae_contig8544:7828..8253Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8544 7829..8253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8544.17579.1

>prot_L-elsbetiae_contig8544.17579.1 ID=prot_L-elsbetiae_contig8544.17579.1|Name=mRNA_L-elsbetiae_contig8544.17579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MGGPGGVYGRRERGPSTSSRYSSGRPGDQRWETQVLLATRAHAIVPQVDM
PFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGKVRYGTIVREGTRDSQE
RRREEVGPQLNTPGSEKTARA*
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mRNA from alignment at L-elsbetiae_contig8544:6435..8253-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8544.17579.1 ID=mRNA_L-elsbetiae_contig8544.17579.1|Name=mRNA_L-elsbetiae_contig8544.17579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1819bp|location=Sequence derived from alignment at L-elsbetiae_contig8544:6435..8253- (Laminarionema elsbetiae ELsaHSoW15)
CATCGTCATTCGTTATACTGAGGAAGAACGAGCTCTTGGCGCGGGGGGTG
GCCTAAGTGGTTCTTAATACCCTCCTCTACTCTAAGTAATCAAAAACGGA
AGCCATGGCCTATGTATGTCATCTTGTGTATCAGACTCCGTACCCGTGGG
AGGATAGAGGGTTTTATTTAGTCTACATGCCATAAGCTTGCTTGCGATGT
ATCGACAACAAGCAATAGCATCGAATGATATTGCCACAATTATTATAGCG
TTGATATGATGCGGTTAAAATCTTCCAGCAAACACACGCTGATCCCTACC
CCTGCCGTTCACCGTTTCGCGTCGTTCTTTCGTTTTGCGGCTTTACCTGT
TTTGGGTGTTCGTGGTGTCTTTTGGTTTTCGTGTGATGTTGGTGAGATGT
GATATGTGACACGCACGTGATCGGCATGGGTGGGCCAGGTGGTGTTTACG
GCCGACGAGAACGAGGACCATCTACCTCATCAAGATACTCCTCAGGCAGA
CCAGGAGACCAGAGGTACGTGTTGTACATACATACTTCGTGCGCAAGGCG
AAAATCCATGCGCGGCTCGTGCGACTCTTGCGTTTGTAGAGGTGTGCATG
TGGATACGTATGTAGGATATTTACGGCCGGAGTATCTAGGCAGGCTGACT
GTCTCTCGGTTTGCGTTATCGTGCATCAGCGAATGCGAGAACGTCCTGGT
TCTGTGCGGGGGTGGGCTGACTAGTCTAGTTACCTGTGGGCCGGTTCGAG
CGGCGATCACCTCGACCTTTATGGATATGCTTTCGAGCAACAGCGCAGTC
AAGCGAAAGAATAAAAGAGAGGTCCTTGAGACTACGTATCGTCTACGTAA
TACGCCCGCTTTCGCTGAAACTGCTCGTGAAGGCCAGAGGTTCTCGGCGC
GTGTCGTGCCTGTACCCACCTGGATTTCTTAATCCCACCTGTGGGAGAGA
GAGGTGTCGGGGGGATGAGTTAATTTTGTCTTTGCCCGGGGAAAGCCCAG
ATCCCGTGTGCGGCACCGCGCCGCATCGTCGGCATCGGACTTTCCTGAAA
GGCTTGTTCGGTTGCGCGTGGAGTGCACTCGAATTGTGAAACCGCTGAAA
CTAACCGGTGGGGGAGACTGTGAGTGGTGCCGAGGTCCATTGCTGACAGG
TAGGCCCTGGCCGCCGAAAAACACAGCTTACGTCTAGCGTGGCGCACTCC
GCCGATGTCGCTTCCCTCCCCAAAAAGCTTGCTTGCTTGACAAAACCGGT
CGATACATAGTCGCTATTAAGTGGAGGCTTCTGGCGAGCCTTGGGTATGA
AACTCAAGCTGAGCGAACGTCCCGAAGCATGTCCATCCCTAAGCGATAAA
CGCTTGTTCGTGTGTTTTTGTCTTGTCGCTTTTTTCAACCTGTCTACGAT
TCTCCGCCTGCATGCCTCTGCCTGTGTGTCCGCCCCCTTGTCCGCCTTCG
TTGCCTTCCCTTGTTCTTGCTCCCTGTGCATTTTCGCCTCTGACCGTCTT
CGATCGATTGATCAAAATCTTGTCAAAACCGAAACCCCCCAGGTGGGAGA
CACAAGTTCTCCTGGCGACACGGGCACACGCCATCGTGCCCCAGGTGGAC
ATGCCCTTCGCCGCCCCGGGCATCTGCCCCAACCTTATCATGAACCCCCA
CGGGTTCCCGTCGCGTATGACGGTGGGTAAGAGGGTCGAGCTCGTGGCCG
GGAAGGTACGGTACGGTACGATAGTCAGGGAAGGGACACGTGATAGCCAG
GAAAGGAGGAGGGAAGAGGTAGGTCCACAGCTAAACACTCCCGGCTCAGA
GAAAACCGCACGCGCGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8544:6435..8253-

>mRNA_L-elsbetiae_contig8544.17579.1 ID=mRNA_L-elsbetiae_contig8544.17579.1|Name=mRNA_L-elsbetiae_contig8544.17579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig8544:6435..8253- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGGGCCAGGTGGTGTTTACGGCCGACGAGAACGAGGACCATCTAC
CTCATCAAGATACTCCTCAGGCAGACCAGGAGACCAGAGATGGGTGGGCC
AGGTGGTGTTTACGGCCGACGAGAACGAGGACCATCTACCTCATCAAGAT
ACTCCTCAGGCAGACCAGGAGACCAGAGGTGGGAGACACAAGTTCTCCTG
GCGACACGGGCACACGCCATCGTGCCCCAGGTGGACATGCCCTTCGCCGC
CCCGGGCATCTGCCCCAACCTTATCATGAACCCCCACGGGTTCCCGTCGC
GTATGACGGTGGGTAAGAGGGTCGAGCTCGTGGCCGGGAAGGTACGGTAC
GGTACGATAGTCAGGGAAGGGACACGTGATAGCCAGGAAAGGAGGAGGGA
AGAGGTAGGTCCACAGCTAAACACTCCCGGCTCAGAGAAAACCGCACGCG
CGTAGGTGGGAGACACAAGTTCTCCTGGCGACACGGGCACACGCCATCGT
GCCCCAGGTGGACATGCCCTTCGCCGCCCCGGGCATCTGCCCCAACCTTA
TCATGAACCCCCACGGGTTCCCGTCGCGTATGACGGTGGGTAAGAGGGTC
GAGCTCGTGGCCGGGAAGGTACGGTACGGTACGATAGTCAGGGAAGGGAC
ACGTGATAGCCAGGAAAGGAGGAGGGAAGAGGTAGGTCCACAGCTAAACA
CTCCCGGCTCAGAGAAAACCGCACGCGCGTAG
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