prot_L-elsbetiae_contig7471.16362.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7471.16362.1
Unique Nameprot_L-elsbetiae_contig7471.16362.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length100
Homology
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BLAST of mRNA_L-elsbetiae_contig7471.16362.1 vs. uniprot
Match: A0A6H5JHS7_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHS7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 8.040e-27
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = 0 
Query:    2 GDGSSEGLLTPALRGGSCAICLSPLRK-SGANGREVYREVYTVQLCRHNFHRECLTENRRAGNTGCPYCRGELGEGVFGLQPALRAESLVCA 92
            G+G +E L TPA RGGSCAICLSPL+K SGA      +EVYTV++C+H FHR CL ENRRAGNTGCPYCRG+L  G+     A   ++ V A
Sbjct:   86 GEGRAE-LTTPACRGGSCAICLSPLKKPSGAK-----KEVYTVRVCQHMFHRVCLVENRRAGNTGCPYCRGDLERGLTPEATAAERKARVLA 171
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BLAST of mRNA_L-elsbetiae_contig7471.16362.1 vs. uniprot
Match: D7G207_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G207_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 9.160e-15
Identity = 35/63 (55.56%), Postives = 37/63 (58.73%), Query Frame = 0 
Query:   17 GSCAICLSPLRKSGAN--GREVYREVYTVQLCRHNFHRECLTENRRAGNTGCPYCRGELGEGV 77
            G C ICL PLR S           EVY +Q C H FHR CL ENRRAGN GCP CRG L  G+
Sbjct:   31 GDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGL 93
[Close]
BLAST of mRNA_L-elsbetiae_contig7471.16362.1 vs. uniprot
Match: A0A6H5L4L7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.900e-14
Identity = 35/63 (55.56%), Postives = 37/63 (58.73%), Query Frame = 0 
Query:   17 GSCAICLSPLRKSGAN--GREVYREVYTVQLCRHNFHRECLTENRRAGNTGCPYCRGELGEGV 77
            G C ICL PLR S           EVY +Q C H FHR CL ENRRAGN GCP CRG L  G+
Sbjct:  206 GDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGL 268
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7471.16362.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHS7_9PHAE8.040e-2759.78RING-type domain-containing protein n=2 Tax=Ectoca... [more]
D7G207_ECTSI9.160e-1555.56RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L4L7_9PHAE3.900e-1455.56RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 19..69
e-value: 8.2E-6
score: 35.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 18..70
e-value: 3.6E-9
score: 36.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 19..70
score: 11.206
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 11..78
e-value: 3.7E-11
score: 44.0
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 18..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7471contigL-elsbetiae_contig7471:7977..9445 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7471.16362.1mRNA_L-elsbetiae_contig7471.16362.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7471 7977..9445 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7471.16362.1 ID=prot_L-elsbetiae_contig7471.16362.1|Name=mRNA_L-elsbetiae_contig7471.16362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
GGDGSSEGLLTPALRGGSCAICLSPLRKSGANGREVYREVYTVQLCRHNF
HRECLTENRRAGNTGCPYCRGELGEGVFGLQPALRAESLVCARIPRCRH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD