mRNA_L-elsbetiae_contig7471.16362.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7471.16362.1
Unique NamemRNA_L-elsbetiae_contig7471.16362.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7471.16362.1 vs. uniprot
Match: A0A6H5JHS7_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHS7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 8.040e-27
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    4 GDGSSEGLLTPALRGGSCAICLSPLRK-SGANGREVYREVYTVQLCRHNFHRECLTENRRAGNTGCPYCRGELGEGVFGLQPALRAESLVCA 276
            G+G +E L TPA RGGSCAICLSPL+K SGA      +EVYTV++C+H FHR CL ENRRAGNTGCPYCRG+L  G+     A   ++ V A
Sbjct:   86 GEGRAE-LTTPACRGGSCAICLSPLKKPSGAK-----KEVYTVRVCQHMFHRVCLVENRRAGNTGCPYCRGDLERGLTPEATAAERKARVLA 171
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BLAST of mRNA_L-elsbetiae_contig7471.16362.1 vs. uniprot
Match: D7G207_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G207_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 9.160e-15
Identity = 35/63 (55.56%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:   49 GSCAICLSPLRKSGAN--GREVYREVYTVQLCRHNFHRECLTENRRAGNTGCPYCRGELGEGV 231
            G C ICL PLR S           EVY +Q C H FHR CL ENRRAGN GCP CRG L  G+
Sbjct:   31 GDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGL 93
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BLAST of mRNA_L-elsbetiae_contig7471.16362.1 vs. uniprot
Match: A0A6H5L4L7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.900e-14
Identity = 35/63 (55.56%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:   49 GSCAICLSPLRKSGAN--GREVYREVYTVQLCRHNFHRECLTENRRAGNTGCPYCRGELGEGV 231
            G C ICL PLR S           EVY +Q C H FHR CL ENRRAGN GCP CRG L  G+
Sbjct:  206 GDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGL 268
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7471.16362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHS7_9PHAE8.040e-2759.78RING-type domain-containing protein n=2 Tax=Ectoca... [more]
D7G207_ECTSI9.160e-1555.56RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L4L7_9PHAE3.900e-1455.56RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7471contigL-elsbetiae_contig7471:7977..9445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.358966-CDS-L-elsbetiae_contig7471:7976..81171622816831.358966-CDS-L-elsbetiae_contig7471:7976..8117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7471 7977..8117 +
1691683846.561529-CDS-L-elsbetiae_contig7471:7976..81171691683846.561529-CDS-L-elsbetiae_contig7471:7976..8117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7471 7977..8117 +
1622816831.3689907-CDS-L-elsbetiae_contig7471:9286..94451622816831.3689907-CDS-L-elsbetiae_contig7471:9286..9445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7471 9287..9445 +
1691683846.5767064-CDS-L-elsbetiae_contig7471:9286..94451691683846.5767064-CDS-L-elsbetiae_contig7471:9286..9445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7471 9287..9445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7471.16362.1prot_L-elsbetiae_contig7471.16362.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7471 7977..9445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7471.16362.1

>prot_L-elsbetiae_contig7471.16362.1 ID=prot_L-elsbetiae_contig7471.16362.1|Name=mRNA_L-elsbetiae_contig7471.16362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
GGDGSSEGLLTPALRGGSCAICLSPLRKSGANGREVYREVYTVQLCRHNF
HRECLTENRRAGNTGCPYCRGELGEGVFGLQPALRAESLVCARIPRCRH*
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mRNA from alignment at L-elsbetiae_contig7471:7977..9445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7471.16362.1 ID=mRNA_L-elsbetiae_contig7471.16362.1|Name=mRNA_L-elsbetiae_contig7471.16362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1469bp|location=Sequence derived from alignment at L-elsbetiae_contig7471:7977..9445+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGCGACGGCAGCAGTGAGGGGCTGCTTACGCCGGCGTTGAGAGGCGG
AAGCTGCGCCATTTGCCTAAGTCCGCTGAGGAAATCTGGCGCGAACGGCA
GAGAGGTCTACAGAGAGGTCTACACGGTCCAGCTGTGTCGGGTGAGGCGG
TCGTCGGGGATGTGGGAGATGGCTTCGTAGCGTCGCGTCATTCTGCTGCC
GGTGCTGCGTCTTATTGAGCAACGATTAGGTGGACAATATTAACGTTTCT
CAAAGTGTACTACCGCTCGTATGTATAGGCCGGTGTAACTACAAGTCTTG
TGTGTATCTAGATACACAAGTGTGGAGATAGACATGAACGACCAGGACAG
TCCTTCAAGTCCCTTCAGTCCGGTGAAGAGGTTTCAGACGATGCCCATGC
AAGATGATTTCAGAGGATTGGCACTTCCGGAGACTACTCGAATTGCTTGC
AGGATATTACTTCGTAGACTATCTACATATCTGGCACTATTGCGCCTTCT
GCGTTGACCATCGATTATAGACTAGACTATCTCACACATATGTAATTACA
TCCGCAGGGGTGGTTGCCTTTTCGCTCGTGGTATGTACAGAGCGTCGTGC
CCGGTGTTCTCCCGAAACACAGATATTTAGGCATTCACACGCCTTCTGCC
CCCCCTACATGAGCCTACATACTTCTGGACAGAGCCACACATGCTGCAGC
CACGACTTTCTGACTTGTGAAAGAAAACGGAAGCTAGCCCACATTTGAGA
CGGGATTCCCTGGGACTCAACCGGTATTCCATATAGTGACGCTTTTGTTG
AGCTTTCTCTTCCAGTATGGTTGGTCAGTGCGCTTACTGCCTGCTTCGCC
GTCGCTGACACCGCTGCTGTGTAATCTTGATTCGTATGGAAGAAACGGAG
AGTGTCTCCATCCTCCGTTGCCCCTTCGGCCTTGTCTTTGCCGTTCATCT
CGCCTTGGCACAGCACATCAGAGGCAGTGGTTCGAGATAAAACAAATAAA
AACCACGAGAACCCTCAAATGACTCATTCGATAACCGCACCATGGTAATG
ACTTCTTCACAGACTGGACGTAGACTGCTGACATTTGTATACATGAATTA
AAAACTATCGGGCTCTTTGGCACTACATACAATACCTCGGCAGCCAGAGA
ATGCAACTAAGATGAAACGGGTTGGAACACGCGCCTGCGCACAGGGGTGC
CAAAGGCTCGCGCGCAACACTCAACAAATACTCCCTATGTAGATTTCGCA
TCTATCTCGCTCCTGTCCCGCCCCGACGAAGCCCCCCTCCCCTGTCCCGC
GACAAATCAGCACAACTTTCATCGGGAGTGCCTCACGGAGAACAGGAGAG
CCGGAAACACGGGCTGCCCCTACTGCCGCGGCGAGCTAGGTGAGGGTGTG
TTTGGTTTACAGCCGGCTCTGCGTGCAGAATCACTGGTCTGCGCCCGCAT
TCCCCGATGCCGGCATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7471:7977..9445+

>mRNA_L-elsbetiae_contig7471.16362.1 ID=mRNA_L-elsbetiae_contig7471.16362.1|Name=mRNA_L-elsbetiae_contig7471.16362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig7471:7977..9445+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGCGACGGCAGCAGTGAGGGGCTGCTTACGCCGGCGTTGAGAGGCGG
AAGCTGCGCCATTTGCCTAAGTCCGCTGAGGAAATCTGGCGCGAACGGCA
GAGAGGTCTACAGAGAGGTCTACACGGTCCAGCTGTGTCGGGGGGGCGAC
GGCAGCAGTGAGGGGCTGCTTACGCCGGCGTTGAGAGGCGGAAGCTGCGC
CATTTGCCTAAGTCCGCTGAGGAAATCTGGCGCGAACGGCAGAGAGGTCT
ACAGAGAGGTCTACACGGTCCAGCTGTGTCGGCACAACTTTCATCGGGAG
TGCCTCACGGAGAACAGGAGAGCCGGAAACACGGGCTGCCCCTACTGCCG
CGGCGAGCTAGGTGAGGGTGTGTTTGGTTTACAGCCGGCTCTGCGTGCAG
AATCACTGGTCTGCGCCCGCATTCCCCGATGCCGGCATTGACACAACTTT
CATCGGGAGTGCCTCACGGAGAACAGGAGAGCCGGAAACACGGGCTGCCC
CTACTGCCGCGGCGAGCTAGGTGAGGGTGTGTTTGGTTTACAGCCGGCTC
TGCGTGCAGAATCACTGGTCTGCGCCCGCATTCCCCGATGCCGGCATTGA
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