prot_L-elsbetiae_contig7419.16299.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7419.16299.1
Unique Nameprot_L-elsbetiae_contig7419.16299.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length144
Homology
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BLAST of mRNA_L-elsbetiae_contig7419.16299.1 vs. uniprot
Match: D7G4X8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X8_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 4.910e-8
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 0 
Query:    9 TCTHHGCSKQPTYGKAGGKAEYCSDHSKDGTVDVVSKLCAFSGCTVRASLGEEATTTVIRKLCARHAEEGMDRISGR 85
            +CT +GC+++PT+G AG KAE+C+ HS   +V+V S+ C+  GC+ RA  G   +    R+  ++HA EGM  +S R
Sbjct:   49 SCTLYGCTRKPTHGVAGKKAEFCARHSLATSVNV-SQECSIDGCSTRAHYGVAGSKK--REFXSKHALEGMVNLSNR 122
[Close]
BLAST of mRNA_L-elsbetiae_contig7419.16299.1 vs. uniprot
Match: D7FR73_ECTSI (EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR73_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 5.120e-6
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 0 
Query:    1 MVNVKSKKTCTHHGCSKQPTYGKAG----GKAEYCSDHSKDGTVDVVSKLCAFSGCTVR 55
            MV+V S +TC   GC K+ T+G  G      A +C  H+++G  DVVSK CAF GCTVR
Sbjct:    4 MVDV-SIRTCAQEGCPKRATHGTPGMDDSKTAPFCMSHAREGMEDVVSKRCAFQGCTVR 61
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7419.16299.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4X8_ECTSI4.910e-841.56EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FR73_ECTSI5.120e-649.15EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7419contigL-elsbetiae_contig7419:4223..4654 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7419.16299.1mRNA_L-elsbetiae_contig7419.16299.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7419 4216..4654 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7419.16299.1 ID=prot_L-elsbetiae_contig7419.16299.1|Name=mRNA_L-elsbetiae_contig7419.16299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MVNVKSKKTCTHHGCSKQPTYGKAGGKAEYCSDHSKDGTVDVVSKLCAFS
GCTVRASLGEEATTTVIRKLCARHAEEGMDRISGRSGGGSKTSGETDHAG
HKGSGTADSDGRTPLPSAAGASSTPRGRISNSKRDADSANLHRV
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