mRNA_L-elsbetiae_contig7419.16299.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7419.16299.1
Unique NamemRNA_L-elsbetiae_contig7419.16299.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7419.16299.1 vs. uniprot
Match: D7G4X8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X8_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 5.210e-8
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 2 
Query:   32 TCTHHGCSKQPTYGKAGGKAEYCSDHSKDGTVDVVSKLCAFSGCTVRASLGEEATTTVIRKLCARHAEEGMDRISGR 262
            +CT +GC+++PT+G AG KAE+C+ HS   +V+V S+ C+  GC+ RA  G   +    R+  ++HA EGM  +S R
Sbjct:   49 SCTLYGCTRKPTHGVAGKKAEFCARHSLATSVNV-SQECSIDGCSTRAHYGVAGSKK--REFXSKHALEGMVNLSNR 122
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BLAST of mRNA_L-elsbetiae_contig7419.16299.1 vs. uniprot
Match: D7FR73_ECTSI (EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR73_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 5.640e-7
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 2 
Query:    5 GMVNVKSKKTCTHHGCSKQPTYGKAG----GKAEYCSDHSKDGTVDVVSKLCAFSGCTVR 172
            GMV+V S +TC   GC K+ T+G  G      A +C  H+++G  DVVSK CAF GCTVR
Sbjct:    3 GMVDV-SIRTCAQEGCPKRATHGTPGMDDSKTAPFCMSHAREGMEDVVSKRCAFQGCTVR 61
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7419.16299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4X8_ECTSI5.210e-841.56EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FR73_ECTSI5.640e-750.00EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7419contigL-elsbetiae_contig7419:4216..4654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog2880.D7G4X8
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size440
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.5677202-UTR-L-elsbetiae_contig7419:4215..42221622816826.5677202-UTR-L-elsbetiae_contig7419:4215..4222Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7419 4216..4222 +
1691683843.2016113-UTR-L-elsbetiae_contig7419:4215..42221691683843.2016113-UTR-L-elsbetiae_contig7419:4215..4222Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7419 4216..4222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.580844-CDS-L-elsbetiae_contig7419:4222..46541622816826.580844-CDS-L-elsbetiae_contig7419:4222..4654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7419 4223..4654 +
1691683843.2157533-CDS-L-elsbetiae_contig7419:4222..46541691683843.2157533-CDS-L-elsbetiae_contig7419:4222..4654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7419 4223..4654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7419.16299.1prot_L-elsbetiae_contig7419.16299.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7419 4223..4654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7419.16299.1

>prot_L-elsbetiae_contig7419.16299.1 ID=prot_L-elsbetiae_contig7419.16299.1|Name=mRNA_L-elsbetiae_contig7419.16299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MVNVKSKKTCTHHGCSKQPTYGKAGGKAEYCSDHSKDGTVDVVSKLCAFS
GCTVRASLGEEATTTVIRKLCARHAEEGMDRISGRSGGGSKTSGETDHAG
HKGSGTADSDGRTPLPSAAGASSTPRGRISNSKRDADSANLHRV
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mRNA from alignment at L-elsbetiae_contig7419:4216..4654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7419.16299.1 ID=mRNA_L-elsbetiae_contig7419.16299.1|Name=mRNA_L-elsbetiae_contig7419.16299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=439bp|location=Sequence derived from alignment at L-elsbetiae_contig7419:4216..4654+ (Laminarionema elsbetiae ELsaHSoW15)
GGACGGGATGGTGAACGTGAAGAGCAAGAAGACATGCACCCACCACGGTT
GCAGCAAGCAGCCGACATATGGCAAGGCTGGCGGCAAGGCGGAGTACTGC
TCTGACCATTCCAAGGACGGCACGGTGGACGTCGTCAGCAAGCTATGTGC
CTTTTCTGGGTGCACCGTAAGGGCCAGCCTCGGCGAGGAAGCCACTACTA
CTGTCATCCGGAAGCTCTGCGCACGACACGCAGAGGAAGGCATGGATCGA
ATTTCTGGCCGGTCCGGGGGGGGCAGCAAAACAAGCGGTGAAACTGACCA
TGCCGGACACAAGGGTAGTGGCACCGCTGATTCCGATGGAAGGACTCCTT
TGCCCTCCGCCGCAGGCGCTTCCTCCACACCCAGAGGGAGAATAAGCAAC
AGCAAGCGAGATGCTGACAGCGCGAACTTGCACCGGGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7419:4216..4654+

>mRNA_L-elsbetiae_contig7419.16299.1 ID=mRNA_L-elsbetiae_contig7419.16299.1|Name=mRNA_L-elsbetiae_contig7419.16299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig7419:4216..4654+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACGTGAAGAGCAAGAAGACATGCACCCACCACGGTTGCAGCAA
GCAGCCGACATATGGCAAGGCTGGCGGCAAGGCGGAGTACTGCTCTGACC
ATTCCAAGGACGGCACGGTGGACGTCGTCAGCAAGCTATGTGCCTTTTCT
GGGTGCACCGTAAGGGCCAGCCTCGGCGAGGAAGCCACTACTACTGTCAT
CCGGAAGCTCTGCGCACGACACGCAGAGGAAGGCATGGATCGAATTTCTG
GCCGGTCCGGGGGGGGCAGCAAAACAAGCGGTGAAACTGACCATGCCGGA
CACAAGGGTAGTGGCACCGCTGATTCCGATGGAAGGACTCCTTTGCCCTC
CGCCGCAGGCGCTTCCTCCACACCCAGAGGGAGAATAAGCAACAGCAAGC
GAGATGCTGACAGCGCGAACTTGCACCGGGTTATGGTGAACGTGAAGAGC
AAGAAGACATGCACCCACCACGGTTGCAGCAAGCAGCCGACATATGGCAA
GGCTGGCGGCAAGGCGGAGTACTGCTCTGACCATTCCAAGGACGGCACGG
TGGACGTCGTCAGCAAGCTATGTGCCTTTTCTGGGTGCACCGTAAGGGCC
AGCCTCGGCGAGGAAGCCACTACTACTGTCATCCGGAAGCTCTGCGCACG
ACACGCAGAGGAAGGCATGGATCGAATTTCTGGCCGGTCCGGGGGGGGCA
GCAAAACAAGCGGTGAAACTGACCATGCCGGACACAAGGGTAGTGGCACC
GCTGATTCCGATGGAAGGACTCCTTTGCCCTCCGCCGCAGGCGCTTCCTC
CACACCCAGAGGGAGAATAAGCAACAGCAAGCGAGATGCTGACAGCGCGA
ACTTGCACCGGGTT
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