prot_L-elsbetiae_contig67.15440.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig67.15440.1
Unique Nameprot_L-elsbetiae_contig67.15440.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length385
Homology
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BLAST of mRNA_L-elsbetiae_contig67.15440.1 vs. uniprot
Match: D7FH14_ECTSI (Hypothetical F-box and leucine rich repeat containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH14_ECTSI)

HSP 1 Score: 524 bits (1350), Expect = 4.340e-184
Identity = 347/383 (90.60%), Postives = 362/383 (94.52%), Query Frame = 0 
Query:    2 MPEATTMKMPEDQFLNVLSYLVVESVFAMSSTCRQLREWCSLFKAVDAGEEELGNRDLALLVRRFPAVNDLTVRFASRLTSAYEVLSQIGPQLVSLKLTGARIIRDDTFRDMVRTFESMRYLSLDGTFYVKSQAINALAKAGQQLQEVCLCGFRQLKDEDVQLLLDSCPSLSVLSVSDCTTLGSLILRSKQLKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVESVVGSCLALQHLGLKGCSALVSPSIQSAKLRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSMLGIKNLTLNCNKLVYANLRGSYKLESSNIQSRCPGLSMVDLCGTSINPEAFARSDGEGEGDVIQGGAPLPWHTY 384
            M    TMKMPEDQFLNVLSYLVV+SVFAMSSTCRQL EWCSLFKAVDAGEEEL N DLALLVRRFPAVNDLT+R ASRLT+AYEVL++IGPQLVSLKLTGARIIRDDTFRDMVRTFESMRYLSLDGTFYVKSQAINALAKAGQQLQEV LCGFRQLKDEDVQ LLDSCPSLSVLSV+DCTTLGSL+LRS QLK+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    VES++GSCLAL+HLGLKGCSALVSP+IQSAKLRS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   DLSMLG+KNLTLNCNKLVYANLRGSYKLES+NIQSRCPGLS+VDLCGT INPEAF RSDGEGEGDVIQGGAPLPWHTY
Sbjct:    1 MLNTATMKMPEDQFLNVLSYLVVDSVFAMSSTCRQLHEWCSLFKAVDAGEEELRNADLALLVRRFPAVNDLTIRSASRLTTAYEVLAEIGPQLVSLKLTGARIIRDDTFRDMVRTFESMRYLSLDGTFYVKSQAINALAKAGQQLQEVSLCGFRQLKDEDVQFLLDSCPSLSVLSVADCTTLGSLVLRSTQLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDCAVESLMGSCLALEHLGLKGCSALVSPTIQSAKLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLDLSMLGVKNLTLNCNKLVYANLRGSYKLESANIQSRCPGLSVVDLCGTKINPEAFVRSDGEGEGDVIQGGAPLPWHTY 383
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig67.15440.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH14_ECTSI4.340e-18490.60Hypothetical F-box and leucine rich repeat contain... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 143..168
e-value: 29.0
score: 10.9
coord: 237..261
e-value: 310.0
score: 2.9
coord: 211..236
e-value: 11.0
score: 14.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 5..364
e-value: 3.6E-28
score: 100.4
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 191..360
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 29..258
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 191..360
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 29..258
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..384
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..29
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 65..274
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 6..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig67contigL-elsbetiae_contig67:42659..49302 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig67.15440.1mRNA_L-elsbetiae_contig67.15440.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig67 42454..50085 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig67.15440.1 ID=prot_L-elsbetiae_contig67.15440.1|Name=mRNA_L-elsbetiae_contig67.15440.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=385bp
MMPEATTMKMPEDQFLNVLSYLVVESVFAMSSTCRQLREWCSLFKAVDAG
EEELGNRDLALLVRRFPAVNDLTVRFASRLTSAYEVLSQIGPQLVSLKLT
GARIIRDDTFRDMVRTFESMRYLSLDGTFYVKSQAINALAKAGQQLQEVC
LCGFRQLKDEDVQLLLDSCPSLSVLSVSDCTTLGSLILRSKQLKSLDVSR
CIHISEMSLEMPALTRLDANWCTKLPDLAVESVVGSCLALQHLGLKGCSA
LVSPSIQSAKLRSLDLSLCGKLTTCSISGPSLTELKVAMCMGLNSLTLDL
PVMTSLDLSMLGIKNLTLNCNKLVYANLRGSYKLESSNIQSRCPGLSMVD
LCGTSINPEAFARSDGEGEGDVIQGGAPLPWHTY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf
IPR036047F-box-like_dom_sf