prot_L-elsbetiae_contig6640.15370.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6640.15370.1
Unique Nameprot_L-elsbetiae_contig6640.15370.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length188
Homology
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BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: D7FQE5_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQE5_ECTSI)

HSP 1 Score: 363 bits (933), Expect = 5.040e-127
Identity = 182/187 (97.33%), Postives = 183/187 (97.86%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGLPPSGGISVHGRPSGGVGGGVPSGIPGMRTR 187
            MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVD+QESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQIL AINDQNRLHAASNKVGLPPSGGIS HGRPSGGVGGG  SGIPGMRTR
Sbjct:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILLAINDQNRLHAASNKVGLPPSGGISAHGRPSGGVGGGGSSGIPGMRTR 187
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BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: A0A835ZDS3_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS3_9STRA)

HSP 1 Score: 281 bits (720), Expect = 1.110e-94
Identity = 133/157 (84.71%), Postives = 150/157 (95.54%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGL 157
            MI+ V+IVNNHGKPRLVKFY+TV  E+AQ+SVI+RIFQQVAQRPD+FCNYLEG IPEWGEGTKLIYRHYATLYF+FAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDE+IMGGMVLETNIN +L+A+NDQ++LHAAS KV L
Sbjct:    1 MIKAVVIVNNHGKPRLVKFYKTVTDEDAQQSVIRRIFQQVAQRPDNFCNYLEGSIPEWGEGTKLIYRHYATLYFIFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEMIMGGMVLETNINAVLSAVNDQSKLHAASMKVQL 157
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BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: W7T2Y9_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Y9_9STRA)

HSP 1 Score: 278 bits (711), Expect = 2.520e-93
Identity = 134/154 (87.01%), Postives = 143/154 (92.86%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNK 154
            MIRGVIIVNNHG+PRLVK YQ+V+GEEAQ+SVI+++FQQVAQRPDSFCNYL+G IPEWGEG KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIM GMVLETNI  IL  INDQNRLHA S K
Sbjct:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQK 154
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BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: A0A6S8ZKR8_9STRA (AP complex subunit sigma n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZKR8_9STRA)

HSP 1 Score: 271 bits (693), Expect = 1.340e-90
Identity = 126/152 (82.89%), Postives = 141/152 (92.76%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAAS 152
            MI+G++IVNNHGKPRLVKFYQ+V  EE Q+SVI+R+FQQVAQRPDSFCNYLEGIIPEWG   KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDEI+MGGMVLETNIN +L AI DQ ++H +S
Sbjct:    1 MIKGILIVNNHGKPRLVKFYQSVTSEETQQSVIRRVFQQVAQRPDSFCNYLEGIIPEWGSNIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIVMGGMVLETNINSVLQAIGDQTKMHKSS 152
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BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: A0A7R9U773_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U773_9STRA)

HSP 1 Score: 266 bits (680), Expect = 2.210e-88
Identity = 132/170 (77.65%), Postives = 145/170 (85.29%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGLPPSGGISVHGRPS 170
            MI+ VI+VNNHGK RLVKFYQ V    AQ+SVI+R+FQQV QRPDSFCNYLEG +PEWG+  KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDEIIM GMVLETNI  IL AINDQ+R+H ASNK   P +G     GRPS
Sbjct:   14 MIKAVIVVNNHGKARLVKFYQNVDSVSAQQSVIRRVFQQVGQRPDSFCNYLEGSVPEWGDDVKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIIMAGMVLETNIVNILQAINDQHRMHMASNKA-QPGTGNAVGRGRPS 182
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BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: A0A7S2P852_9STRA (AP complex subunit sigma n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P852_9STRA)

HSP 1 Score: 265 bits (678), Expect = 2.580e-88
Identity = 127/164 (77.44%), Postives = 143/164 (87.20%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGLPPSGGIS 164
            MI+GVIIVNN GKPRL KFYQ+V  EE Q+ VI+R+F+Q++ RPD+FCNYLEGI+PEWG   KLIYRHYATLYFVFAVDAQESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEI+MGGMVLETNI  IL AI DQ +LHAAS K  +  + G+S
Sbjct:    1 MIKGVIIVNNQGKPRLAKFYQSVTSEEIQQRVIRRVFEQISSRPDNFCNYLEGIVPEWGSNIKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNIASILQAIQDQGKLHAASLKAKVDKTDGLS 164
[Close]
BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: B5YNE9_THAPS (AP complex subunit sigma n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNE9_THAPS)

HSP 1 Score: 263 bits (671), Expect = 2.810e-87
Identity = 125/154 (81.17%), Postives = 139/154 (90.26%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNK 154
            MI+G+IIVNN GKPRLVKFYQ V GE+ Q+SVI+R+FQQV+ RPDSFCNYLEG +PEWGE  KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDK FENVCELDLIFHSD+VHY+LDEI+MGGMVLETNIN IL AINDQ R+H  S K
Sbjct:    1 MIKGIIIVNNSGKPRLVKFYQNVFGEQRQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGENIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDRVHYILDEIVMGGMVLETNINSILQAINDQERMHNESMK 154
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BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: A0A8J9T0F8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T0F8_PHATR)

HSP 1 Score: 258 bits (660), Expect = 5.690e-86
Identity = 120/149 (80.54%), Postives = 135/149 (90.60%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLH 149
            MI+G+IIVNNHGKPRLVKFYQ V  E  Q+SVI+R+FQQVA RPDSFCNYLEGI+PEWG+  KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHY+LDEI+MGGMVLETNI  +L +I DQ ++H
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQNVESEALQQSVIRRVFQQVAARPDSFCNYLEGIVPEWGDHIKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYILDEIVMGGMVLETNIQGVLQSIKDQGKIH 149
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BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: A0A1Z5JTJ4_FISSO (AP complex subunit sigma n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTJ4_FISSO)

HSP 1 Score: 258 bits (660), Expect = 1.570e-85
Identity = 120/152 (78.95%), Postives = 139/152 (91.45%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAAS 152
            MI+G+IIVNNHGKPRLVKFYQ+V  E  Q+SVI+R+FQQVA RPDSFCNYLEG IPEWG+  KLIYRHYATL+FVFAVD+QESDLGILDL+QVFVE+LD+CFE+VCELDLIFHSD+VHYVLDEI+MGGMVLETNI+ +L A+ DQ+RLH  S
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQSVESESLQQSVIRRVFQQVAARPDSFCNYLEGAIPEWGDNIKLIYRHYATLFFVFAVDSQESDLGILDLIQVFVESLDRCFESVCELDLIFHSDRVHYVLDEIVMGGMVLETNIHSVLQAVKDQDRLHKDS 152
[Close]
BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: K0SBT8_THAOC (Clat_adaptor_s domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBT8_THAOC)

HSP 1 Score: 261 bits (668), Expect = 2.270e-84
Identity = 127/158 (80.38%), Postives = 140/158 (88.61%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGLP 158
            MI+G+IIVNN GKPRLVKFYQ V GEE Q+SVI+R+FQQV+ RPDSFCNYLEG +PEWGE  KLIYRHYATLYFVFAVDAQESDLGILDL+QVFVEALDK FENVCELDLIFHSDKVH++LDEI+MGGMVLETNIN IL AI+DQ R+H  S K   P
Sbjct:  174 MIKGIIIVNNSGKPRLVKFYQNVFGEEKQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGEKCKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDKVHHILDEIVMGGMVLETNINAILQAISDQERMHKDSMKTKGP 331
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQE5_ECTSI5.040e-12797.33AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835ZDS3_9STRA1.110e-9484.71AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
W7T2Y9_9STRA2.520e-9387.01AP complex subunit sigma n=2 Tax=Monodopsidaceae T... [more]
A0A6S8ZKR8_9STRA1.340e-9082.89AP complex subunit sigma n=1 Tax=Ditylum brightwel... [more]
A0A7R9U773_9STRA2.210e-8877.65Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2P852_9STRA2.580e-8877.44AP complex subunit sigma n=1 Tax=Leptocylindrus da... [more]
B5YNE9_THAPS2.810e-8781.17AP complex subunit sigma n=1 Tax=Thalassiosira pse... [more]
A0A8J9T0F8_PHATR5.690e-8680.54Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A1Z5JTJ4_FISSO1.570e-8578.95AP complex subunit sigma n=2 Tax=Fistulifera solar... [more]
K0SBT8_THAOC2.270e-8480.38Clat_adaptor_s domain-containing protein n=2 Tax=T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016635Adaptor protein complex, sigma subunitPIRSFPIRSF015588AP_complex_sigmacoord: 1..156
e-value: 2.2E-52
score: 174.9
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 1..163
NoneNo IPR availableGENE3D3.30.450.60coord: 1..157
e-value: 6.5E-59
score: 200.1
NoneNo IPR availablePANTHERPTHR11753:SF10AP-3 COMPLEX SUBUNIT SIGMA-2coord: 1..163
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..147
e-value: 6.8E-47
score: 159.0
IPR000804Clathrin adaptor complex, small chainPROSITEPS00989CLAT_ADAPTOR_Scoord: 64..74
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 1..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6640contigL-elsbetiae_contig6640:757..3449 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6640.15370.1mRNA_L-elsbetiae_contig6640.15370.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6640 757..3449 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6640.15370.1 ID=prot_L-elsbetiae_contig6640.15370.1|Name=mRNA_L-elsbetiae_contig6640.15370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNY
LEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDK
CFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHA
ASNKVGLPPSGGISVHGRPSGGVGGGVPSGIPGMRTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
IPR000804Clathrin_sm-chain_CS
IPR011012Longin-like_dom_sf