mRNA_L-elsbetiae_contig6640.15370.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: D7FQE5_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQE5_ECTSI) HSP 1 Score: 363 bits (933), Expect = 5.040e-127 Identity = 182/187 (97.33%), Postives = 183/187 (97.86%), Query Frame = 1 Query: 1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGLPPSGGISVHGRPSGGVGGGVPSGIPGMRTR 561 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVD+QESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQIL AINDQNRLHAASNKVGLPPSGGIS HGRPSGGVGGG SGIPGMRTR Sbjct: 1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILLAINDQNRLHAASNKVGLPPSGGISAHGRPSGGVGGGGSSGIPGMRTR 187
BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: A0A835ZDS3_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS3_9STRA) HSP 1 Score: 281 bits (720), Expect = 1.110e-94 Identity = 133/157 (84.71%), Postives = 150/157 (95.54%), Query Frame = 1 Query: 1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGL 471 MI+ V+IVNNHGKPRLVKFY+TV E+AQ+SVI+RIFQQVAQRPD+FCNYLEG IPEWGEGTKLIYRHYATLYF+FAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDE+IMGGMVLETNIN +L+A+NDQ++LHAAS KV L Sbjct: 1 MIKAVVIVNNHGKPRLVKFYKTVTDEDAQQSVIRRIFQQVAQRPDNFCNYLEGSIPEWGEGTKLIYRHYATLYFIFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEMIMGGMVLETNINAVLSAVNDQSKLHAASMKVQL 157
BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: W7T2Y9_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Y9_9STRA) HSP 1 Score: 278 bits (711), Expect = 2.520e-93 Identity = 134/154 (87.01%), Postives = 143/154 (92.86%), Query Frame = 1 Query: 1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNK 462 MIRGVIIVNNHG+PRLVK YQ+V+GEEAQ+SVI+++FQQVAQRPDSFCNYL+G IPEWGEG KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIM GMVLETNI IL INDQNRLHA S K Sbjct: 1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQK 154
BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: A0A6S8ZKR8_9STRA (AP complex subunit sigma n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZKR8_9STRA) HSP 1 Score: 271 bits (693), Expect = 1.340e-90 Identity = 126/152 (82.89%), Postives = 141/152 (92.76%), Query Frame = 1 Query: 1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAAS 456 MI+G++IVNNHGKPRLVKFYQ+V EE Q+SVI+R+FQQVAQRPDSFCNYLEGIIPEWG KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDEI+MGGMVLETNIN +L AI DQ ++H +S Sbjct: 1 MIKGILIVNNHGKPRLVKFYQSVTSEETQQSVIRRVFQQVAQRPDSFCNYLEGIIPEWGSNIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIVMGGMVLETNINSVLQAIGDQTKMHKSS 152
BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: A0A7R9U773_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U773_9STRA) HSP 1 Score: 266 bits (680), Expect = 2.210e-88 Identity = 132/170 (77.65%), Postives = 145/170 (85.29%), Query Frame = 1 Query: 1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGLPPSGGISVHGRPS 510 MI+ VI+VNNHGK RLVKFYQ V AQ+SVI+R+FQQV QRPDSFCNYLEG +PEWG+ KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDEIIM GMVLETNI IL AINDQ+R+H ASNK P +G GRPS Sbjct: 14 MIKAVIVVNNHGKARLVKFYQNVDSVSAQQSVIRRVFQQVGQRPDSFCNYLEGSVPEWGDDVKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIIMAGMVLETNIVNILQAINDQHRMHMASNKA-QPGTGNAVGRGRPS 182
BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: A0A7S2P852_9STRA (AP complex subunit sigma n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P852_9STRA) HSP 1 Score: 265 bits (678), Expect = 2.580e-88 Identity = 127/164 (77.44%), Postives = 143/164 (87.20%), Query Frame = 1 Query: 1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGLPPSGGIS 492 MI+GVIIVNN GKPRL KFYQ+V EE Q+ VI+R+F+Q++ RPD+FCNYLEGI+PEWG KLIYRHYATLYFVFAVDAQESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEI+MGGMVLETNI IL AI DQ +LHAAS K + + G+S Sbjct: 1 MIKGVIIVNNQGKPRLAKFYQSVTSEEIQQRVIRRVFEQISSRPDNFCNYLEGIVPEWGSNIKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNIASILQAIQDQGKLHAASLKAKVDKTDGLS 164
BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: B5YNE9_THAPS (AP complex subunit sigma n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNE9_THAPS) HSP 1 Score: 263 bits (671), Expect = 2.810e-87 Identity = 125/154 (81.17%), Postives = 139/154 (90.26%), Query Frame = 1 Query: 1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNK 462 MI+G+IIVNN GKPRLVKFYQ V GE+ Q+SVI+R+FQQV+ RPDSFCNYLEG +PEWGE KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDK FENVCELDLIFHSD+VHY+LDEI+MGGMVLETNIN IL AINDQ R+H S K Sbjct: 1 MIKGIIIVNNSGKPRLVKFYQNVFGEQRQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGENIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDRVHYILDEIVMGGMVLETNINSILQAINDQERMHNESMK 154
BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: A0A8J9T0F8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T0F8_PHATR) HSP 1 Score: 258 bits (660), Expect = 5.690e-86 Identity = 120/149 (80.54%), Postives = 135/149 (90.60%), Query Frame = 1 Query: 1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLH 447 MI+G+IIVNNHGKPRLVKFYQ V E Q+SVI+R+FQQVA RPDSFCNYLEGI+PEWG+ KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHY+LDEI+MGGMVLETNI +L +I DQ ++H Sbjct: 1 MIKGIIIVNNHGKPRLVKFYQNVESEALQQSVIRRVFQQVAARPDSFCNYLEGIVPEWGDHIKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYILDEIVMGGMVLETNIQGVLQSIKDQGKIH 149
BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: A0A1Z5JTJ4_FISSO (AP complex subunit sigma n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTJ4_FISSO) HSP 1 Score: 258 bits (660), Expect = 1.570e-85 Identity = 120/152 (78.95%), Postives = 139/152 (91.45%), Query Frame = 1 Query: 1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAAS 456 MI+G+IIVNNHGKPRLVKFYQ+V E Q+SVI+R+FQQVA RPDSFCNYLEG IPEWG+ KLIYRHYATL+FVFAVD+QESDLGILDL+QVFVE+LD+CFE+VCELDLIFHSD+VHYVLDEI+MGGMVLETNI+ +L A+ DQ+RLH S Sbjct: 1 MIKGIIIVNNHGKPRLVKFYQSVESESLQQSVIRRVFQQVAARPDSFCNYLEGAIPEWGDNIKLIYRHYATLFFVFAVDSQESDLGILDLIQVFVESLDRCFESVCELDLIFHSDRVHYVLDEIVMGGMVLETNIHSVLQAVKDQDRLHKDS 152
BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Match: K0SBT8_THAOC (Clat_adaptor_s domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBT8_THAOC) HSP 1 Score: 261 bits (668), Expect = 2.270e-84 Identity = 127/158 (80.38%), Postives = 140/158 (88.61%), Query Frame = 1 Query: 1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHAASNKVGLP 474 MI+G+IIVNN GKPRLVKFYQ V GEE Q+SVI+R+FQQV+ RPDSFCNYLEG +PEWGE KLIYRHYATLYFVFAVDAQESDLGILDL+QVFVEALDK FENVCELDLIFHSDKVH++LDEI+MGGMVLETNIN IL AI+DQ R+H S K P Sbjct: 174 MIKGIIIVNNSGKPRLVKFYQNVFGEEKQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGEKCKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDKVHHILDEIVMGGMVLETNINAILQAISDQERMHKDSMKTKGP 331 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6640.15370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6640.15370.1 >prot_L-elsbetiae_contig6640.15370.1 ID=prot_L-elsbetiae_contig6640.15370.1|Name=mRNA_L-elsbetiae_contig6640.15370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYback to top mRNA from alignment at L-elsbetiae_contig6640:757..3449+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6640.15370.1 ID=mRNA_L-elsbetiae_contig6640.15370.1|Name=mRNA_L-elsbetiae_contig6640.15370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2693bp|location=Sequence derived from alignment at L-elsbetiae_contig6640:757..3449+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6640:757..3449+ >mRNA_L-elsbetiae_contig6640.15370.1 ID=mRNA_L-elsbetiae_contig6640.15370.1|Name=mRNA_L-elsbetiae_contig6640.15370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig6640:757..3449+ (Laminarionema elsbetiae ELsaHSoW15)back to top |