prot_L-elsbetiae_contig6196.14773.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6196.14773.1
Unique Nameprot_L-elsbetiae_contig6196.14773.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length195
Homology
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BLAST of mRNA_L-elsbetiae_contig6196.14773.1 vs. uniprot
Match: A0A6H5JR72_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR72_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.660e-42
Identity = 94/145 (64.83%), Postives = 107/145 (73.79%), Query Frame = 0 
Query:   57 DDESPAQQG--PAAR--RVEPWGSLLL-SDQDQEEVDVQLAE---VDAVLVEGREEQERAILQDVTRTRSGTPALLDEKVRQWLQRSVSLFCRERGLQYAQGLTELAAPWALITDPPCLGSFSYRCFCSFVDRFAPNIFATAPEE 193
            DD SP  +   P +R   VEPW SLLL SD  +E  D ++ +   +   LV  REEQE AILQDV RTR+ +P   DEK RQWLQRSVSL+CRERGL+Y+QGLT LAAPWALITDPPCL  FSYRCF SFVDRFAPNIF+TA EE
Sbjct:   46 DDGSPVAEAECPPSRWVMVEPWSSLLLLSDHVREGRDDEILQDRKLAEALVGSREEQE-AILQDVPRTRTDSPVFGDEKARQWLQRSVSLYCRERGLKYSQGLTHLAAPWALITDPPCLNGFSYRCFRSFVDRFAPNIFSTAQEE 189
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BLAST of mRNA_L-elsbetiae_contig6196.14773.1 vs. uniprot
Match: D7FJC0_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC0_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.460e-40
Identity = 76/96 (79.17%), Postives = 83/96 (86.46%), Query Frame = 0 
Query:   98 LVEGREEQERAILQDVTRTRSGTPALLDEKVRQWLQRSVSLFCRERGLQYAQGLTELAAPWALITDPPCLGSFSYRCFCSFVDRFAPNIFATAPEE 193
            LV  REEQ+ AILQDVTRTR+ +P   DEK RQWLQRSVSL+CRERGL+Y+QGLT LAAPWALITDPPCL  FSYRCF SFVDRFAPNIF+TA EE
Sbjct:   42 LVGSREEQQ-AILQDVTRTRTDSPVFGDEKARQWLQRSVSLYCRERGLRYSQGLTHLAAPWALITDPPCLDGFSYRCFRSFVDRFAPNIFSTAQEE 136
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6196.14773.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JR72_9PHAE1.660e-4264.83Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
D7FJC0_ECTSI2.460e-4079.17Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000195Rab-GTPase-TBC domainPROSITEPS50086TBC_RABGAPcoord: 64..195
score: 8.557
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 97..187

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6196contigL-elsbetiae_contig6196:2231..8289 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6196.14773.1mRNA_L-elsbetiae_contig6196.14773.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6196 2210..8289 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6196.14773.1 ID=prot_L-elsbetiae_contig6196.14773.1|Name=mRNA_L-elsbetiae_contig6196.14773.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
MLSERPAPYSSTNGRDEALGAPLDAHGVMLLPPPGDGGLHGKASAAVGGR
VPMELRDDESPAQQGPAARRVEPWGSLLLSDQDQEEVDVQLAEVDAVLVE
GREEQERAILQDVTRTRSGTPALLDEKVRQWLQRSVSLFCRERGLQYAQG
LTELAAPWALITDPPCLGSFSYRCFCSFVDRFAPNIFATAPEEGA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
IPR035969Rab-GTPase_TBC_sf