prot_L-elsbetiae_contig5530.13822.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5530.13822.1
Unique Nameprot_L-elsbetiae_contig5530.13822.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length42
Homology
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BLAST of mRNA_L-elsbetiae_contig5530.13822.1 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 7.550e-6
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 0 
Query:    1 MRFGVNTAAPFVGMKREEGSDYPFAKQ 27
            M+ GVN AAPFVGMK+EEG +YPFAKQ
Sbjct:    1 MKHGVNLAAPFVGMKKEEGIEYPFAKQ 27
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5530.13822.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Q6_ECTSI7.550e-677.78Mediator of RNA polymerase II transcription subuni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5530contigL-elsbetiae_contig5530:6586..6711 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5530.13822.1mRNA_L-elsbetiae_contig5530.13822.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5530 6583..6851 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5530.13822.1 ID=prot_L-elsbetiae_contig5530.13822.1|Name=mRNA_L-elsbetiae_contig5530.13822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=42bp
MRFGVNTAAPFVGMKREEGSDYPFAKQVNSRHVLTFVRNAV*
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