mRNA_L-elsbetiae_contig5530.13822.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5530.13822.1
Unique NamemRNA_L-elsbetiae_contig5530.13822.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5530.13822.1 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 4.650e-5
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:    4 MRFGVNTAAPFVGMKREEGSDYPFAKQ 84
            M+ GVN AAPFVGMK+EEG +YPFAKQ
Sbjct:    1 MKHGVNLAAPFVGMKKEEGIEYPFAKQ 27
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5530.13822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Q6_ECTSI4.650e-577.78Mediator of RNA polymerase II transcription subuni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5530contigL-elsbetiae_contig5530:6583..6851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size269
Cds size126
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5530.13822.1prot_L-elsbetiae_contig5530.13822.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5530 6586..6711 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816582.817244-UTR-L-elsbetiae_contig5530:6582..65851622816582.817244-UTR-L-elsbetiae_contig5530:6582..6585Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5530 6583..6585 +
1691683663.360695-UTR-L-elsbetiae_contig5530:6582..65851691683663.360695-UTR-L-elsbetiae_contig5530:6582..6585Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5530 6583..6585 +
1622816582.838756-UTR-L-elsbetiae_contig5530:6711..68511622816582.838756-UTR-L-elsbetiae_contig5530:6711..6851Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5530 6712..6851 +
1691683663.3826063-UTR-L-elsbetiae_contig5530:6711..68511691683663.3826063-UTR-L-elsbetiae_contig5530:6711..6851Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5530 6712..6851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816582.8276792-CDS-L-elsbetiae_contig5530:6585..67111622816582.8276792-CDS-L-elsbetiae_contig5530:6585..6711Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5530 6586..6711 +
1691683663.372103-CDS-L-elsbetiae_contig5530:6585..67111691683663.372103-CDS-L-elsbetiae_contig5530:6585..6711Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5530 6586..6711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5530.13822.1

>prot_L-elsbetiae_contig5530.13822.1 ID=prot_L-elsbetiae_contig5530.13822.1|Name=mRNA_L-elsbetiae_contig5530.13822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=42bp
MRFGVNTAAPFVGMKREEGSDYPFAKQVNSRHVLTFVRNAV*
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mRNA from alignment at L-elsbetiae_contig5530:6583..6851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5530.13822.1 ID=mRNA_L-elsbetiae_contig5530.13822.1|Name=mRNA_L-elsbetiae_contig5530.13822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=269bp|location=Sequence derived from alignment at L-elsbetiae_contig5530:6583..6851+ (Laminarionema elsbetiae ELsaHSoW15)
GAGATGAGATTTGGCGTCAACACAGCGGCGCCGTTTGTGGGTATGAAACG
GGAGGAGGGGAGCGATTACCCGTTCGCTAAGCAGGTGAACTCAAGACATG
TTTTAACTTTTGTCCGAAATGCGGTATGAGCTACCACAACAGCAGCCGCT
GCTGTATCTGCATATGTAGGACCTCGGTCCTTCACAGTGCTTTATCTACC
TTGGGGGCATAGACTATGTAGATCTCATGTGACATCGCAGGCCATGCTTT
TTCTGCGAGCGCATCTCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5530:6583..6851+

>mRNA_L-elsbetiae_contig5530.13822.1 ID=mRNA_L-elsbetiae_contig5530.13822.1|Name=mRNA_L-elsbetiae_contig5530.13822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=252bp|location=Sequence derived from alignment at L-elsbetiae_contig5530:6583..6851+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGATTTGGCGTCAACACAGCGGCGCCGTTTGTGGGTATGAAACGGGA
GGAGGGGAGCGATTACCCGTTCGCTAAGCAGGTGAACTCAAGACATGTTT
TAACTTTTGTCCGAAATGCGGTATGAATGAGATTTGGCGTCAACACAGCG
GCGCCGTTTGTGGGTATGAAACGGGAGGAGGGGAGCGATTACCCGTTCGC
TAAGCAGGTGAACTCAAGACATGTTTTAACTTTTGTCCGAAATGCGGTAT
GA
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