prot_L-elsbetiae_contig5299.13447.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5299.13447.1
Unique Nameprot_L-elsbetiae_contig5299.13447.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length184
Homology
BLAST of mRNA_L-elsbetiae_contig5299.13447.1 vs. uniprot
Match: D8LSG8_ECTSI (Nucleolar protein 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG8_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 6.210e-63
Identity = 118/176 (67.05%), Postives = 131/176 (74.43%), Query Frame = 0
Query:    1 MAKMGLRQSANRDIRPVASRAAARAAPGGRLVEACEVSRLFDVADTADLKVIDRNFGRRPMSDEDQRYTAKLMAKHGLNQQAMGRDIKVNYNQLTLGQLRRMCDKLLSLGDDQRVVAVPERALKE-------TAGSGAA----------GRREAPPAVAMEEGEGSDNKGVVAAQE 159
            MAKMGLRQSANRDIR  A RAAA AAPGG++VE+CEVSRLFDVADTADLKVIDRN+GRRPMSDEDQRY AKL+ KHGL+ +AM RDIKVNYNQLTLGQLRRMCD LLSLG++QRVV +PER   E       TA  G A          GR  A   VAME GE S + G   A++
Sbjct:    1 MAKMGLRQSANRDIRAPARRAAASAAPGGKIVESCEVSRLFDVADTADLKVIDRNYGRRPMSDEDQRYMAKLLTKHGLDHEAMTRDIKVNYNQLTLGQLRRMCDTLLSLGEEQRVVTLPERVANEATKAASTTAAGGTAAGTGTGPCHSGRVSASTPVAMEVGEESGDDGKEKAKD 176          
BLAST of mRNA_L-elsbetiae_contig5299.13447.1 vs. uniprot
Match: A0A6H5KSG2_9PHAE (Nucleolar protein 16 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG2_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 3.010e-62
Identity = 118/176 (67.05%), Postives = 130/176 (73.86%), Query Frame = 0
Query:    1 MAKMGLRQSANRDIRPVASRAAARAAPGGRLVEACEVSRLFDVADTADLKVIDRNFGRRPMSDEDQRYTAKLMAKHGLNQQAMGRDIKVNYNQLTLGQLRRMCDKLLSLGDDQRVVAVPERALKE-------TAGSGAAGRREAPPA----------VAMEEGEGSDNKGVVAAQE 159
            MAKMGLRQSANRDIR  A RAAA AAPGG++VE+CEVSRLFDVADTADLKVIDRN+GRRPMSDEDQRY AKL++KHGL+ +AM RDIKVNYNQLTLGQLRRMCD LLSL ++QRVV +PER   E       TA  GAA      P           VAME GE S + G   AQE
Sbjct:   50 MAKMGLRQSANRDIRAPARRAAASAAPGGKIVESCEVSRLFDVADTADLKVIDRNYGRRPMSDEDQRYMAKLLSKHGLDHEAMARDIKVNYNQLTLGQLRRMCDTLLSLDEEQRVVTLPERVANEAAKAASRTAAGGAAAATGTSPCQSRRVSVSTPVAMEVGEASVDDGKEKAQE 225          
BLAST of mRNA_L-elsbetiae_contig5299.13447.1 vs. uniprot
Match: A0A7R9UCV7_9STRA (Nucleolar protein 16 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCV7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.470e-11
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 0
Query:   52 IDRNFGRRPMSDEDQRYTAKLMAKHGLNQQAMGRDIKVNYNQLTLGQLRRMCDKLLSLGDDQRVVAVPERALKET 126
            +DRN  RRPMS+EDQRY AK M KHG + +AM  DI  N  Q T  +LR+M  + L L   QR++ VP    +E+
Sbjct:   96 VDRNPRRRPMSEEDQRYIAKQMKKHGKDYKAMFMDIDTNVMQYTEAKLRKMASRFLLLEGAQRLIPVPSEVAEES 170          
BLAST of mRNA_L-elsbetiae_contig5299.13447.1 vs. uniprot
Match: A0A7S1XQN3_9STRA (Nucleolar protein 16 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQN3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 6.500e-8
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 0
Query:   21 AAARAAPGGRLVEACEVSRLF--DVADTADLKVIDRNFGRRPMSDEDQRYTAKLMAKHGLNQQAMGRDIKVNYNQLTLGQLRRMCDKLLSLGDDQRVVAVP 119
            AA R+A  G+ + A  ++ +   DV  + DL    RN  R+ MS+ DQRY AK +AKHG   + M  D++ N  Q T  QLR+M  + L LG+ +R V VP
Sbjct:  110 AARRSAREGKPIAAATLAEVTFADVPASDDLDGF-RNPRRKAMSEADQRYIAKQLAKHGTEYKKMFMDVETNVMQYTETQLRKMASRFLLLGEHERDVPVP 209          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5299.13447.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSG8_ECTSI6.210e-6367.05Nucleolar protein 16 n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KSG2_9PHAE3.010e-6267.05Nucleolar protein 16 n=1 Tax=Ectocarpus sp. CCAP 1... [more]
A0A7R9UCV7_9STRA4.470e-1148.00Nucleolar protein 16 n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XQN3_9STRA6.500e-840.59Nucleolar protein 16 n=1 Tax=Phaeomonas parva TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019002Ribosome biogenesis protein Nop16PFAMPF09420Nop16coord: 58..106
e-value: 4.3E-10
score: 40.0
IPR019002Ribosome biogenesis protein Nop16PANTHERPTHR13243HSPC111 PROTEIN-RELATEDcoord: 57..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5299contigL-elsbetiae_contig5299:1154..3012 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5299.13447.1mRNA_L-elsbetiae_contig5299.13447.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5299 169..3418 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5299.13447.1 ID=prot_L-elsbetiae_contig5299.13447.1|Name=mRNA_L-elsbetiae_contig5299.13447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
MAKMGLRQSANRDIRPVASRAAARAAPGGRLVEACEVSRLFDVADTADLK
VIDRNFGRRPMSDEDQRYTAKLMAKHGLNQQAMGRDIKVNYNQLTLGQLR
RMCDKLLSLGDDQRVVAVPERALKETAGSGAAGRREAPPAVAMEEGEGSD
NKGVVAAQEEEAGEKKEKGKSKGKSKKKRKSSE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019002Ribosome_biogenesis_Nop16