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Homology
BLAST of mRNA_L-elsbetiae_contig5299.13447.1 vs. uniprot
Match: A0A6H5KSG2_9PHAE (Nucleolar protein 16 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG2_9PHAE) HSP 1 Score: 249 bits (636), Expect = 1.640e-78 Identity = 142/204 (69.61%), Postives = 155/204 (75.98%), Query Frame = 1
Query: 1 NRHRYKKPDISSAVVRELWDNNLTAETNMAKMGLRQSANRDIRPVASRAAARAAPGGRLVEACEVSRLFDVADTADLKVIDRNFGRRPMSDEDQRYTAKLMAKHGLNQQAMGRDIKVNYNQLTLGQLRRMCDKLLSLGDDQRVVAVPERALKE-------TAGSGAAGRREAPPA----------VAMEEGEGSDNKGVVAAQE 561
N RYKKPDISSAVVRE WD+NLTAETNMAKMGLRQSANRDIR A RAAA AAPGG++VE+CEVSRLFDVADTADLKVIDRN+GRRPMSDEDQRY AKL++KHGL+ +AM RDIKVNYNQLTLGQLRRMCD LLSL ++QRVV +PER E TA GAA P VAME GE S + G AQE
Sbjct: 22 NTFRYKKPDISSAVVRERWDSNLTAETNMAKMGLRQSANRDIRAPARRAAASAAPGGKIVESCEVSRLFDVADTADLKVIDRNYGRRPMSDEDQRYMAKLLSKHGLDHEAMARDIKVNYNQLTLGQLRRMCDTLLSLDEEQRVVTLPERVANEAAKAASRTAAGGAAAATGTSPCQSRRVSVSTPVAMEVGEASVDDGKEKAQE 225
BLAST of mRNA_L-elsbetiae_contig5299.13447.1 vs. uniprot
Match: D8LSG8_ECTSI (Nucleolar protein 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG8_ECTSI) HSP 1 Score: 202 bits (513), Expect = 1.110e-60 Identity = 118/176 (67.05%), Postives = 131/176 (74.43%), Query Frame = 1
Query: 85 MAKMGLRQSANRDIRPVASRAAARAAPGGRLVEACEVSRLFDVADTADLKVIDRNFGRRPMSDEDQRYTAKLMAKHGLNQQAMGRDIKVNYNQLTLGQLRRMCDKLLSLGDDQRVVAVPERALKE-------TAGSGAA----------GRREAPPAVAMEEGEGSDNKGVVAAQE 561
MAKMGLRQSANRDIR A RAAA AAPGG++VE+CEVSRLFDVADTADLKVIDRN+GRRPMSDEDQRY AKL+ KHGL+ +AM RDIKVNYNQLTLGQLRRMCD LLSLG++QRVV +PER E TA G A GR A VAME GE S + G A++
Sbjct: 1 MAKMGLRQSANRDIRAPARRAAASAAPGGKIVESCEVSRLFDVADTADLKVIDRNYGRRPMSDEDQRYMAKLLTKHGLDHEAMTRDIKVNYNQLTLGQLRRMCDTLLSLGEEQRVVTLPERVANEATKAASTTAAGGTAAGTGTGPCHSGRVSASTPVAMEVGEESGDDGKEKAKD 176
BLAST of mRNA_L-elsbetiae_contig5299.13447.1 vs. uniprot
Match: A0A7R9UCV7_9STRA (Nucleolar protein 16 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCV7_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 4.660e-14 Identity = 49/153 (32.03%), Postives = 80/153 (52.29%), Query Frame = 1
Query: 4 RHRYKKPDISSAVVRELWDNNLTAETNMAKMGLRQSANRDIRPVASRAAARAAPGGRLVEACEVSRLFDVADTADLKVIDRNFGRRPMSDEDQRYTAKLMAKHGLNQQAMGRDIKVNYNQLTLGQLRRMCDKLLSLGDDQRVVAVPERALKET 462
+++ +P ++ ++++WD L N+ ++GL + N + +++ G +LV F +D +DRN RRPMS+EDQRY AK M KHG + +AM DI N Q T +LR+M + L L QR++ VP +E+
Sbjct: 24 KNKIVRPVVTDRSLKKVWDEKLPPAENLKRVGLNFNVNGEFGRKSTK------KGPKLVAETLQEVTFAEIPASDSLDVDRNPRRRPMSEEDQRYIAKQMKKHGKDYKAMFMDIDTNVMQYTEAKLRKMASRFLLLEGAQRLIPVPSEVAEES 170
BLAST of mRNA_L-elsbetiae_contig5299.13447.1 vs. uniprot
Match: A0A7S1XQN3_9STRA (Nucleolar protein 16 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQN3_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 3.720e-12 Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 1
Query: 7 HRYKKPDISSAVVRELWDNNLTAETNMAKMGLRQSANRDIRPVASRAAARAAPGGRLVEACEVSRLF--DVADTADLKVIDRNFGRRPMSDEDQRYTAKLMAKHGLNQQAMGRDIKVNYNQLTLGQLRRMCDKLLSLGDDQRVVAVP 441
++ K ++ +R++WD L A N+ ++GL N RP AA R+A G+ + A ++ + DV + DL RN R+ MS+ DQRY AK +AKHG + M D++ N Q T QLR+M + L LG+ +R V VP
Sbjct: 69 NKVPKAKVTDHNLRKVWDEKLPAAVNLKRVGLTHDVN-GKRP----AARRSAREGKPIAAATLAEVTFADVPASDDLDGF-RNPRRKAMSEADQRYIAKQLAKHGTEYKKMFMDVETNVMQYTETQLRKMASRFLLLGEHERDVPVP 209
BLAST of mRNA_L-elsbetiae_contig5299.13447.1 vs. uniprot
Match: A0A7S2VEB0_9STRA (Nucleolar protein 16 n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VEB0_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 2.340e-6 Identity = 46/143 (32.17%), Postives = 67/143 (46.85%), Query Frame = 1
Query: 22 PDISSAVVRELWDNNLTAETNMAKMGLRQSANRDIRPVASRAAARAAPGGRLVEACEVSRLFDV--ADTADLKVIDRNFGRRPMSDEDQRYTAKLMAKHGLNQQAMGRDIKVNYNQLTLGQLRRMCDKLLSLGDDQRVVAVPE 444
P + +++ WD N++ N+ KMGL N D+ +R + V LFD+ +D L+ R P+ +E+++Y AK M KHG N M RD K N Q T LR++ + L L QR V VPE
Sbjct: 33 PKFTDKRIKKNWDTNISPSANLVKMGLVALPN-DLNN------SRGSSTKVTVTQSTPIELFDIPESDRPSLR------SRYPLDEEEEKYIAKCMKKHGDNYLKMFRDTKTNDMQHTEQVLRKLGSRYLLLSPQQRRVEVPE 162
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 203.8 |
Seed ortholog evalue | 7.1e-50 |
Seed eggNOG ortholog | 2880.D8LSG8 |
KEGG ko | ko:K14839 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | Ribosome biogenesis protein Nop16 |
EggNOG OGs | 2D0KR@1,2SEKH@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko03009 |
Ec32 ortholog description | Ribosome biogenesis protein Nop16 |
Ec32 ortholog | Ec-21_003630.1 |
Exons | 4 |
Model size | 1042 |
Cds size | 552 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816547.5675294-UTR-L-elsbetiae_contig5299:168..216 | 1622816547.5675294-UTR-L-elsbetiae_contig5299:168..216 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5299 169..216 + |
1691683638.5590105-UTR-L-elsbetiae_contig5299:168..216 | 1691683638.5590105-UTR-L-elsbetiae_contig5299:168..216 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5299 169..216 + |
1622816547.5790825-UTR-L-elsbetiae_contig5299:1117..1153 | 1622816547.5790825-UTR-L-elsbetiae_contig5299:1117..1153 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5299 1118..1153 + |
1691683638.573248-UTR-L-elsbetiae_contig5299:1117..1153 | 1691683638.573248-UTR-L-elsbetiae_contig5299:1117..1153 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5299 1118..1153 + |
1622816547.6267061-UTR-L-elsbetiae_contig5299:3012..3418 | 1622816547.6267061-UTR-L-elsbetiae_contig5299:3012..3418 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5299 3013..3418 + |
1691683638.6190507-UTR-L-elsbetiae_contig5299:3012..3418 | 1691683638.6190507-UTR-L-elsbetiae_contig5299:3012..3418 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5299 3013..3418 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816547.5914025-CDS-L-elsbetiae_contig5299:1153..1277 | 1622816547.5914025-CDS-L-elsbetiae_contig5299:1153..1277 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5299 1154..1277 + |
1691683638.5854666-CDS-L-elsbetiae_contig5299:1153..1277 | 1691683638.5854666-CDS-L-elsbetiae_contig5299:1153..1277 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5299 1154..1277 + |
1622816547.6022081-CDS-L-elsbetiae_contig5299:2045..2164 | 1622816547.6022081-CDS-L-elsbetiae_contig5299:2045..2164 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5299 2046..2164 + |
1691683638.6009061-CDS-L-elsbetiae_contig5299:2045..2164 | 1691683638.6009061-CDS-L-elsbetiae_contig5299:2045..2164 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5299 2046..2164 + |
1622816547.616145-CDS-L-elsbetiae_contig5299:2703..3012 | 1622816547.616145-CDS-L-elsbetiae_contig5299:2703..3012 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5299 2704..3012 + |
1691683638.6101973-CDS-L-elsbetiae_contig5299:2703..3012 | 1691683638.6101973-CDS-L-elsbetiae_contig5299:2703..3012 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5299 2704..3012 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5299.13447.1 >prot_L-elsbetiae_contig5299.13447.1 ID=prot_L-elsbetiae_contig5299.13447.1|Name=mRNA_L-elsbetiae_contig5299.13447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
MAKMGLRQSANRDIRPVASRAAARAAPGGRLVEACEVSRLFDVADTADLK VIDRNFGRRPMSDEDQRYTAKLMAKHGLNQQAMGRDIKVNYNQLTLGQLR RMCDKLLSLGDDQRVVAVPERALKETAGSGAAGRREAPPAVAMEEGEGSD NKGVVAAQEEEAGEKKEKGKSKGKSKKKRKSSE* back to topmRNA from alignment at L-elsbetiae_contig5299:169..3418+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5299.13447.1 ID=mRNA_L-elsbetiae_contig5299.13447.1|Name=mRNA_L-elsbetiae_contig5299.13447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3250bp|location=Sequence derived from alignment at L-elsbetiae_contig5299:169..3418+ (Laminarionema elsbetiae ELsaHSoW15) AACAGACACAGATACAAAAAACCAGACATCAGCTCGGCGGTCGTGAGGGT
AAGTGGTCCTCTGACCCATTTGCTTCTGAAAAGTGTTAAGGTGTCGACTT
TGGGGGGCCCTCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGAG
CCACCGCCCCCCCCGCGGGGTTGGTGCCTCGTCCCTGGGTCGGGGTGAAA
ACNNNNNNNNNNGACTCCACGGTCCTCCGATCCGTTAACTTCACATTAAC
TAAACCCTGCACTCCTTAGACCCGCTTGTCCCCCCCCCCCCCCCCCCCGC
CCCGAAAAAGAGATGGGCTGTTTTCGACAGGTGTTGTCGTTCATCGCCCA
GAGCAAGGAAGAAAACCGCGCTCGGCGACCCTGCCCTGTTTCCTACACGA
TGACGATAACGGAGTAGATTAAATCAACACACCCCGCATAACAGCATCAA
GCACGAAACGTATGTATTGTAGGTAGGTACATATGTACCCTCAAACCTGA
CTTCCTCCAAGTTTTCTCCCTGGTCGTGGCGGGGGGTCCTCGTTCCACGG
AGCACCCTCGCTACATATAATATGTATTCCCTGCGGCAAAAGCATGCAAC
TGTATGTAGTATGTAGTTGATGGCTCAATCAAACGTGCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCGCGCCCCCCCCCCCCCCCCCCGC
GGCGGGTTTTTCTTGCCCGCGCGCGCGCCCCCCCCCCCNNNNNNNNNNTC
TTCCCTGGGGCAAAAGCATTCAACTGTATTTATTAGTTGGTTTATGGCTC
AAACAAACGGGCCCCCCCCCCCCCCGCGCGCGCGCGCGCGCCGGCGGCGC
CGGCGCTACTGCTCGAATGCGCTGGTTTGCTTTCGCGAGCGGTGCAACCA
AACCCCACGAGCCGTGTGTCCTTTGTGCGCCGCTGTTTTTGTCCACCAGG
AATTGTGGGACAACAACTTGACGGCGGAGACGAACATGGCCAAGATGGGG
CTGCGGCAGAGCGCGAACAGGGACATCAGACCCGTGGCGAGCAGGGCGGC
CGCGCGGGCCGCGCCGGGGGGGCGGCTTGTTGAGGCCTGCGAGGTGTCGA
GATTATTCGGTGAGGACGACGTCCTCTTCTTCTTCTTGTTCTGTGTTTTT
TTTTTCGAAGTCCCCCTGCTGCGCATCATCATGCACGACGCATACATACG
CGCGGCGACAAGATGAGCGTTTGACCCCGTTGCCGCTCACCTCCAAAGCG
CAACTCCGCCGTGTGCGCAGAAAATTTCGCACATATGTACATCAAAGCGT
GCCCGTGCCGCTTTCAGATTGCGTATGTACACACAACCCAGACCTCTCTC
TGCCTTCTTGCTGGTGGGCAAGCACGTCCCGATTTTCCGAGCTCAGTGCC
GAGAGAGAGAGCACACAACTCTGCAGCGTACCTAGGAAGAGAGCGGGTAG
GCCACAAGGGCTCTCGGGGCCCAGAGGGTGCCTGCGTCTCGGCCGGGAGT
CCTCTCGGGCCGAGGCTTCTCCGCCGGGATCTGCCTGAAGCGAAGACCAC
TGACTGCTGTTGCGTTTGGTTTGGAGAGAGGCCCGGCCTTCCCTCGCGGA
CCCGTGTGCTCTGCAGCACCAGACGAGTGACACTTGACACTTGTTAACCG
CTAGACCCACCCCATCTACTCACCCATCCCACCTGCCACCACCCCCCGCC
GCCCCCCCAAACGCGTTGCCTCTTGCTCTGCAGCACTAGACGAGTGAACT
TGACACTTCGTAACGGCTAGACCCACCCCACCTACCTACCTACCTACCCA
CCCATCCGCCGCCCCCCCAAAACGCCTTACCTTTTTACCTCCCCGTCTTG
CGGTCGCCCCCCCGCTGCCAATGGCAGACGTCGCAGACACGGCCGACCTG
AAGGTGATCGATCGCAACTTCGGTCGGCGGCCGATGTCGGACGAGGACCA
GCGGTACACGGCCAAGCTCATGGCCAAGCACGGGCTCAACCAACAGGTGT
GTATTTATGTATGCATGTATCTAGAAATAGTATACCATATAGAGTTTTGT
ATTTCGGCTTCTTGAGCCGAAATCTTGGGTTTTGGACCAGGTATGATATC
GCGGGCTGTTTGTCTTTTGGGGGGGTTAAATCGGCTCGCGTTCGCTCTCG
CGGGTTTTTGGGGATCGGTTGCGGCCTGTGGTTGTTCGTGTGCAGCCTAA
GTCACGATAACTCGGTCGGTCGCTTTTATCGGGGGTGTATAGATGGTGGC
GACAAGAAGCTCAGGAGGAGGAGGAGGAGGAGGTTGTTGCGCGAATAAAT
CACAGGCGGGAGTCGAAGCGGAGGTTTACATGGGGAACTCGCAAGTGTTG
GGGGGTGCCGCTAGTCTAGCAGGGATAGGAACGACACTCCGTGTCGAAAT
GGGTTGCCTGTTTAGTGGCCAAACGTCTTAAGGCAAGCATTAATTGCGCC
CCCACCCCCCCTTCTCTCCCTCTCGCCTTCCTCTGTGCCCCCATTTCTGC
TCCCGCCCCTTCCACCAACCACCTGCTCCCACAAGGCGATGGGGCGAGAC
ATCAAGGTGAACTACAACCAGCTCACGCTGGGGCAGCTTCGGCGAATGTG
CGACAAGCTCCTTTCCCTCGGGGACGACCAACGAGTCGTCGCCGTACCGG
AACGCGCGCTGAAGGAGACTGCCGGCAGCGGCGCCGCGGGCCGTCGAGAA
GCGCCGCCGGCTGTGGCGATGGAAGAAGGGGAGGGCTCGGACAACAAAGG
GGTTGTTGCTGCACAAGAGGAGGAGGCAGGAGAGAAAAAGGAGAAGGGCA
AAAGCAAGGGCAAGAGCAAGAAAAAAAGGAAATCGAGCGAGTGACTTAGT
CCCGTAGAGTTGGTGCCAGGGTTTGAGGAGACCGGGCGGTGCGCCGGAGA
GAAGCGAAAGGCGGGCTGGGGGTTAGCGGCCCCGGCGCTTGTGTTCGGGC
ACATCAATATGTAGTAGTCTGTAATTGCGGGAGACGGAATAAATATAACT
CTTGCGATTTGCCCTTGGCTTGTTTTGTGTGTGCTTGCTGTTGTGTTCCA
TTGACACGATATCTCCTGATCGTTTGGTAGTCTTTGCGGCTGCTGTTCAG
CTGCTGAGGAGCAAGACTCTGTCCGGCAGTCGGGGTAGCCGCCCCGCTCC
GGCCAGCGGGGTGTTTCTTTGAAATGGCGGCGGCACGCCGGCACGCATAC
ATAAATCACCATGACCCCCCAAAATAGAAGTAGTAGTGCATTTCATCCCA
back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5299:169..3418+ >mRNA_L-elsbetiae_contig5299.13447.1 ID=mRNA_L-elsbetiae_contig5299.13447.1|Name=mRNA_L-elsbetiae_contig5299.13447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig5299:169..3418+ (Laminarionema elsbetiae ELsaHSoW15) ATGGCCAAGATGGGGCTGCGGCAGAGCGCGAACAGGGACATCAGACCCGT GGCGAGCAGGGCGGCCGCGCGGGCCGCGCCGGGGGGGCGGCTTGTTGAGG CCTGCGAGGTGTCGAGATTATTCGATGGCCAAGATGGGGCTGCGGCAGAG CGCGAACAGGGACATCAGACCCGTGGCGAGCAGGGCGGCCGCGCGGGCCG CGCCGGGGGGGCGGCTTGTTGAGGCCTGCGAGGTGTCGAGATTATTCGAC GTCGCAGACACGGCCGACCTGAAGGTGATCGATCGCAACTTCGGTCGGCG GCCGATGTCGGACGAGGACCAGCGGTACACGGCCAAGCTCATGGCCAAGC ACGGGCTCAACCAACAGACGTCGCAGACACGGCCGACCTGAAGGTGATCG ATCGCAACTTCGGTCGGCGGCCGATGTCGGACGAGGACCAGCGGTACACG GCCAAGCTCATGGCCAAGCACGGGCTCAACCAACAGGCGATGGGGCGAGA CATCAAGGTGAACTACAACCAGCTCACGCTGGGGCAGCTTCGGCGAATGT GCGACAAGCTCCTTTCCCTCGGGGACGACCAACGAGTCGTCGCCGTACCG GAACGCGCGCTGAAGGAGACTGCCGGCAGCGGCGCCGCGGGCCGTCGAGA AGCGCCGCCGGCTGTGGCGATGGAAGAAGGGGAGGGCTCGGACAACAAAG GGGTTGTTGCTGCACAAGAGGAGGAGGCAGGAGAGAAAAAGGAGAAGGGC AAAAGCAAGGGCAAGAGCAAGAAAAAAAGGAAATCGAGCGAGTGAGCGAT GGGGCGAGACATCAAGGTGAACTACAACCAGCTCACGCTGGGGCAGCTTC GGCGAATGTGCGACAAGCTCCTTTCCCTCGGGGACGACCAACGAGTCGTC GCCGTACCGGAACGCGCGCTGAAGGAGACTGCCGGCAGCGGCGCCGCGGG CCGTCGAGAAGCGCCGCCGGCTGTGGCGATGGAAGAAGGGGAGGGCTCGG ACAACAAAGGGGTTGTTGCTGCACAAGAGGAGGAGGCAGGAGAGAAAAAG GAGAAGGGCAAAAGCAAGGGCAAGAGCAAGAAAAAAAGGAAATCGAGCGA GTGA back to top
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