prot_L-elsbetiae_contig5295.13439.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5295.13439.1
Unique Nameprot_L-elsbetiae_contig5295.13439.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length107
Homology
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BLAST of mRNA_L-elsbetiae_contig5295.13439.1 vs. uniprot
Match: D7FWU3_ECTSI (Copper transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWU3_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 2.160e-40
Identity = 78/107 (72.90%), Postives = 91/107 (85.05%), Query Frame = 0 
Query:    1 MGFTNEMIRYGRDRMAKTLDVSVASDLQRTAGFAVQIFVANMLMLLVMLYEYVILIFLILGLALGHLVTLRLTAAQRQGGT-NAGSKTPPEAVGSSGSPCCNTDTCA 106
            MGF NEMIRYGRDRMAKT DVS+ASDL+ TA FAVQI++A MLMLLVMLYEYVILI +I GLA GHL+TLR +A +R+    +AG+KTPPE +GSSG+PCCNTDT A
Sbjct:   74 MGFANEMIRYGRDRMAKTSDVSLASDLKMTAAFAVQIYLAYMLMLLVMLYEYVILIMIISGLATGHLLTLRWSAGRRRAALRDAGAKTPPEVMGSSGTPCCNTDTVA 180
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BLAST of mRNA_L-elsbetiae_contig5295.13439.1 vs. uniprot
Match: D7FH71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH71_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.860e-31
Identity = 67/104 (64.42%), Postives = 78/104 (75.00%), Query Frame = 0 
Query:    1 MGFTNEMIRYGRDRMAKTLDVSVASDLQRTAGFAVQIFVANMLMLLVMLYEYVILIFLILGLALGHLVTLRLTAAQRQGGTNAGSKTPPEAVGSSGSPCCNTDT 104
            MGF NEMIRYGRDRMAK   V V SD++ T  FAVQ+F+A MLMLLVMLYEYVILI +I GLA GHLVTLRL+A +R+     G+K      GSSG+PCCN+ T
Sbjct:  101 MGFANEMIRYGRDRMAKASGVCVGSDVKATFAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLVTLRLSAGRRRAALKDGAKEASGVAGSSGTPCCNSAT 204
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5295.13439.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWU3_ECTSI2.160e-4072.90Copper transport protein n=2 Tax=Ectocarpus TaxID=... [more]
D7FH71_ECTSI1.860e-3164.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007274Ctr copper transporterPFAMPF04145Ctrcoord: 20..68
e-value: 3.6E-8
score: 34.2
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 69..106
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 49..68
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..48
NoneNo IPR availableTMHMMTMhelixcoord: 46..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5295contigL-elsbetiae_contig5295:8666..11426 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5295.13439.1mRNA_L-elsbetiae_contig5295.13439.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5295 7898..11528 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5295.13439.1 ID=prot_L-elsbetiae_contig5295.13439.1|Name=mRNA_L-elsbetiae_contig5295.13439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MGFTNEMIRYGRDRMAKTLDVSVASDLQRTAGFAVQIFVANMLMLLVMLY
EYVILIFLILGLALGHLVTLRLTAAQRQGGTNAGSKTPPEAVGSSGSPCC
NTDTCA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007274Cop_transporter