mRNA_L-elsbetiae_contig5295.13439.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5295.13439.1 vs. uniprot
Match: D7FWU3_ECTSI (Copper transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWU3_ECTSI) HSP 1 Score: 185 bits (469), Expect = 1.270e-53 Identity = 100/140 (71.43%), Postives = 117/140 (83.57%), Query Frame = 1 Query: 4 AAQASTQCVLFLFEGAAVDSETKYAFAVIGAFLMGFTNEMIRYGRDRMAKTLDVSVASDLQRTAGFAVQIFVANMLMLLVMLYEYVILIFLILGLALGHLVTLRLTAAQRQGGT-NAGSKTPPEAVGSSGSPCCNTDTCA 420 A AS C+LFLFEGA VD++TKYAFA +GAF MGF NEMIRYGRDRMAKT DVS+ASDL+ TA FAVQI++A MLMLLVMLYEYVILI +I GLA GHL+TLR +A +R+ +AG+KTPPE +GSSG+PCCNTDT A Sbjct: 41 ATSASVNCILFLFEGAGVDTKTKYAFAALGAFFMGFANEMIRYGRDRMAKTSDVSLASDLKMTAAFAVQIYLAYMLMLLVMLYEYVILIMIISGLATGHLLTLRWSAGRRRAALRDAGAKTPPEVMGSSGTPCCNTDTVA 180
BLAST of mRNA_L-elsbetiae_contig5295.13439.1 vs. uniprot
Match: D7FH71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH71_ECTSI) HSP 1 Score: 163 bits (412), Expect = 8.390e-45 Identity = 90/139 (64.75%), Postives = 106/139 (76.26%), Query Frame = 1 Query: 4 AAQASTQCVLFLFEGAAVDSETKYAFAVIGAFLMGFTNEMIRYGRDRMAKTLDVSVASDLQRTAGFAVQIFVANMLMLLVMLYEYVILIFLILGLALGHLVTLRLTAAQRQGGTNAGSKTPPEAVGSSGSPCCNTDTCA 420 A AS +C+LFLFEGA VD++TKYAFA +GAF MGF NEMIRYGRDRMAK V V SD++ T FAVQ+F+A MLMLLVMLYEYVILI +I GLA GHLVTLRL+A +R+ G+K GSSG+PCCN+ T A Sbjct: 68 ATSASVRCILFLFEGAGVDTKTKYAFAALGAFCMGFANEMIRYGRDRMAKASGVCVGSDVKATFAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLVTLRLSAGRRRAALKDGAKEASGVAGSSGTPCCNSATQA 206
BLAST of mRNA_L-elsbetiae_contig5295.13439.1 vs. uniprot
Match: W7TTP6_9STRA (Copper transport protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTP6_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.130e-7 Identity = 52/145 (35.86%), Postives = 71/145 (48.97%), Query Frame = 1 Query: 25 CVLFLFEGAAVDSETKYAFAVIGAFLMGFTNEMIRYGRDRM--------------------AKTLDVSVASDLQRTAGFAVQIFVANMLMLLVMLYEYVILIFLILGLALGHLVTLRLTAAQRQGGTNAGSKTPPEAVGSSGSPC 399 C+L+LF+GA V++ KYA A+IG F + F+ E +R+ R M L V F V +FVA ++MLLVMLYE+ I I L+LGLA G+ T + A R A K P A+G+ G C Sbjct: 33 CILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYF-TFEMWEAYRV----ANKKQLPSAIGAIGGGC 172
BLAST of mRNA_L-elsbetiae_contig5295.13439.1 vs. uniprot
Match: A0A835YQY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY3_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 3.610e-7 Identity = 41/92 (44.57%), Postives = 53/92 (57.61%), Query Frame = 1 Query: 25 CVLFLFEGAAVDSETKYAFAVIGAFLMGFTNEMIRYGRDRMAKTLDVSVASDLQRTAGFAVQIFVANMLMLLVMLYEYVILIFLILGLALGH 300 CV++LF GA +D+E KYA AVIG FL+ F NE +R+ R RMA A Q+ A LMLL MLYE V+ ++LGL G+ Sbjct: 50 CVIWLFPGAILDTEGKYAAAVIGTFLLAFGNEGLRWLRTRMAAEQAPPXXXXXPSLALSVAQMVNAYWLMLLTMLYESVMFSMIVLGLMAGY 141
BLAST of mRNA_L-elsbetiae_contig5295.13439.1 vs. uniprot
Match: W7U9L9_9STRA (Copper transport protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9L9_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 4.370e-7 Identity = 52/145 (35.86%), Postives = 71/145 (48.97%), Query Frame = 1 Query: 25 CVLFLFEGAAVDSETKYAFAVIGAFLMGFTNEMIRYGRDRM--------------------AKTLDVSVASDLQRTAGFAVQIFVANMLMLLVMLYEYVILIFLILGLALGHLVTLRLTAAQRQGGTNAGSKTPPEAVGSSGSPC 399 C+L+LF+GA V++ KYA A+IG F + F+ E +R+ R M L V F V +FVA ++MLLVMLYE+ I I L+LGLA G+ T + A R A K P A+G+ G C Sbjct: 91 CILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYF-TFEMWEAYRV----ANKKQLPSAIGAIGGGC 230
BLAST of mRNA_L-elsbetiae_contig5295.13439.1 vs. uniprot
Match: A0A835YUT5_9STRA (Copper transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT5_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 2.090e-6 Identity = 52/173 (30.06%), Postives = 76/173 (43.93%), Query Frame = 1 Query: 25 CVLFLFEGAAVDSETKYAFAVIGAFLMGFTNEMIRYGRDRMAK---------TLDV-SVASDLQRTAGFAVQIFVANMLMLLVMLYEYVILIFLILGLALGHLVTLRLTAAQRQGGTNA----------GSKTPPEAVG------------------------SSGSPCCNTD 411 C+++LFEGA +D+ KY AVIG FL+ F NE IR+ R R D+ + A D+ + Q+ +A LML+VM YE + ++LGL G+L + ++ T+ GS TPP+ SS +PCCN D Sbjct: 44 CIIWLFEGAVLDTAGKYTGAVIGTFLLAFANEGIRWLRSRAMSGKAPFTRCHLSDMPAFARDVVLALMYGFQMLIAYWLMLIVMTYEVFLFTAILLGLTAGYLTFNYVDRRAKEAATDCNCAVSAAKTVGSNTPPQLASEGSQNNLTEALAPMPETATAAWKVSSSTPCCNGD 216 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5295.13439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5295.13439.1 >prot_L-elsbetiae_contig5295.13439.1 ID=prot_L-elsbetiae_contig5295.13439.1|Name=mRNA_L-elsbetiae_contig5295.13439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp MGFTNEMIRYGRDRMAKTLDVSVASDLQRTAGFAVQIFVANMLMLLVMLYback to top mRNA from alignment at L-elsbetiae_contig5295:7898..11528- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5295.13439.1 ID=mRNA_L-elsbetiae_contig5295.13439.1|Name=mRNA_L-elsbetiae_contig5295.13439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3631bp|location=Sequence derived from alignment at L-elsbetiae_contig5295:7898..11528- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5295:7898..11528- >mRNA_L-elsbetiae_contig5295.13439.1 ID=mRNA_L-elsbetiae_contig5295.13439.1|Name=mRNA_L-elsbetiae_contig5295.13439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig5295:7898..11528- (Laminarionema elsbetiae ELsaHSoW15)back to top |