prot_L-elsbetiae_contig5230.13342.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5230.13342.1
Unique Nameprot_L-elsbetiae_contig5230.13342.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length212
Homology
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BLAST of mRNA_L-elsbetiae_contig5230.13342.1 vs. uniprot
Match: A0A6H5JCD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD4_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 9.080e-41
Identity = 100/184 (54.35%), Postives = 119/184 (64.67%), Query Frame = 0 
Query:   26 TKSRYFVGVSPAVLFVATLSALAFLTVALGAVVVAGSQALFFFALPLATAAGGAFLVAAPERTPFGTDPTVLLVLRLAGSVAVAYAGSAMLVGRSGCAGVRAAHLSLVAAALGALAAALAMDESSVLAEAXXXXXXXXXXXXXXXXXXXXXXXXXXSAMISAAGPAFSRKIQGGKPAGPAALAC 209
            TKSRYFVG+SPAV+FVA+LS LAFL V+                   A+AAGGAFLVAAPE TPFG DP  +L+LR  G++A+AYAGSAMLVG+   A VR+AHL+LVAAALG +AAAL  DE S LA                      XXX    A++SAAGPAF+R+IQ GKPA PA L+C
Sbjct:   23 TKSRYFVGISPAVVFVASLSVLAFLAVSXXXXXXXXXXXXXXXXXXXASAAGGAFLVAAPEMTPFGADPAAVLLLRAGGALAIAYAGSAMLVGKCCPAKVRSAHLALVAAALGTMAAALVADEPSALA--------GDVGDKAAVALGRAXXXAATGALMSAAGPAFTRRIQSGKPAEPAVLSC 198
[Close]
BLAST of mRNA_L-elsbetiae_contig5230.13342.1 vs. uniprot
Match: D7FQ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ26_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.340e-31
Identity = 120/209 (57.42%), Postives = 137/209 (65.55%), Query Frame = 0 
Query:    1 MTCRPGCERPGSVLEKSGNDGAAPPTKSRYFVGVSPAVLFVATLSALAFLTVALGAVVVAGSQALFFFALPLATAAGGAFLVAAPERTPFGTDPTVLLVLRLAGSVAVAYAGSAMLVGRSGCAGVRAAHLSLVAAALGALAAALAMDESSVLAEAXXXXXXXXXXXXXXXXXXXXXXXXXXSAMISAAGPAFSRKIQGGKPAGPAALAC 209
            M C  G     S+L+    D     TKSRYFVG+SPAV+FVA+LS LAFL V+                   A+AAGGAFLVAAPE TPFG DP  LL+LR  G++A+AYAGSAMLVG+   A VR+AHL+LVAAALG +A              XXXXXXXXXXXXXXXXXXXXXXXXXX      AGPAFSR+IQ GKPA PA L+C
Sbjct:   70 MACPTGKACAESLLDM---DKCTSSTKSRYFVGISPAVVFVASLSVLAFLAVSXXXXXXXXXXXXXXXXXXXASAAGGAFLVAAPEMTPFGADPAALLLLRAGGALAIAYAGSAMLVGKCCPAKVRSAHLALVAAALGTMA--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPAFSRRIQSGKPAEPAVLSC 267
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5230.13342.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCD4_9PHAE9.080e-4154.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ26_ECTSI1.340e-3157.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 193..211
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 59..64
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..58
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 65..84
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..36
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 85..95
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 118..128
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 171..192
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 129..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..117
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 147..170
NoneNo IPR availableTMHMMTMhelixcoord: 37..59
NoneNo IPR availableTMHMMTMhelixcoord: 170..192
NoneNo IPR availableTMHMMTMhelixcoord: 66..85
NoneNo IPR availableTMHMMTMhelixcoord: 95..117
NoneNo IPR availableTMHMMTMhelixcoord: 124..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5230contigL-elsbetiae_contig5230:5564..6199 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5230.13342.1mRNA_L-elsbetiae_contig5230.13342.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5230 3019..6283 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5230.13342.1 ID=prot_L-elsbetiae_contig5230.13342.1|Name=mRNA_L-elsbetiae_contig5230.13342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
MTCRPGCERPGSVLEKSGNDGAAPPTKSRYFVGVSPAVLFVATLSALAFL
TVALGAVVVAGSQALFFFALPLATAAGGAFLVAAPERTPFGTDPTVLLVL
RLAGSVAVAYAGSAMLVGRSGCAGVRAAHLSLVAAALGALAAALAMDESS
VLAEAGGGGGGGGGGERAAALLGRAAVLAAASAMISAAGPAFSRKIQGGK
PAGPAALACPG*
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