mRNA_L-elsbetiae_contig5230.13342.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5230.13342.1
Unique NamemRNA_L-elsbetiae_contig5230.13342.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5230.13342.1 vs. uniprot
Match: A0A6H5JCD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD4_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.380e-40
Identity = 100/184 (54.35%), Postives = 119/184 (64.67%), Query Frame = 1 
Query:  184 TKSRYFVGVSPAVLFVATLSALAFLTVALGAVVVAGSQALFFFALPLATAAGGAFLVAAPERTPFGTDPTVLLVLRLAGSVAVAYAGSAMLVGRSGCAGVRAAHLSLVAAALGALAAALAMDESSVLAEAXXXXXXXXXXXXXXXXXXXXXXXXXXSAMISAAGPAFSRKIQGGKPAGPAALAC 735
            TKSRYFVG+SPAV+FVA+LS LAFL V+                   A+AAGGAFLVAAPE TPFG DP  +L+LR  G++A+AYAGSAMLVG+   A VR+AHL+LVAAALG +AAAL  DE S LA                      XXX    A++SAAGPAF+R+IQ GKPA PA L+C
Sbjct:   23 TKSRYFVGISPAVVFVASLSVLAFLAVSXXXXXXXXXXXXXXXXXXXASAAGGAFLVAAPEMTPFGADPAAVLLLRAGGALAIAYAGSAMLVGKCCPAKVRSAHLALVAAALGTMAAALVADEPSALA--------GDVGDKAAVALGRAXXXAATGALMSAAGPAFTRRIQSGKPAEPAVLSC 198
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BLAST of mRNA_L-elsbetiae_contig5230.13342.1 vs. uniprot
Match: D7FQ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ26_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.190e-31
Identity = 120/209 (57.42%), Postives = 137/209 (65.55%), Query Frame = 1 
Query:  109 MTCRPGCERPGSVLEKSGNDGAAPPTKSRYFVGVSPAVLFVATLSALAFLTVALGAVVVAGSQALFFFALPLATAAGGAFLVAAPERTPFGTDPTVLLVLRLAGSVAVAYAGSAMLVGRSGCAGVRAAHLSLVAAALGALAAALAMDESSVLAEAXXXXXXXXXXXXXXXXXXXXXXXXXXSAMISAAGPAFSRKIQGGKPAGPAALAC 735
            M C  G     S+L+    D     TKSRYFVG+SPAV+FVA+LS LAFL V+                   A+AAGGAFLVAAPE TPFG DP  LL+LR  G++A+AYAGSAMLVG+   A VR+AHL+LVAAALG +A              XXXXXXXXXXXXXXXXXXXXXXXXXX      AGPAFSR+IQ GKPA PA L+C
Sbjct:   70 MACPTGKACAESLLDM---DKCTSSTKSRYFVGISPAVVFVASLSVLAFLAVSXXXXXXXXXXXXXXXXXXXASAAGGAFLVAAPEMTPFGADPAALLLLRAGGALAIAYAGSAMLVGKCCPAKVRSAHLALVAAALGTMA--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPAFSRRIQSGKPAEPAVLSC 267
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5230.13342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCD4_9PHAE2.380e-4054.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ26_ECTSI2.190e-3157.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5230contigL-elsbetiae_contig5230:3019..6283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007720.1
Exons2
Model size828
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5230.13342.1prot_L-elsbetiae_contig5230.13342.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5230 5564..6199 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816537.735471-UTR-L-elsbetiae_contig5230:3018..31051622816537.735471-UTR-L-elsbetiae_contig5230:3018..3105Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5230 3019..3105 +
1691683631.4996417-UTR-L-elsbetiae_contig5230:3018..31051691683631.4996417-UTR-L-elsbetiae_contig5230:3018..3105Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5230 3019..3105 +
1622816537.747178-UTR-L-elsbetiae_contig5230:5542..55631622816537.747178-UTR-L-elsbetiae_contig5230:5542..5563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5230 5543..5563 +
1691683631.5090952-UTR-L-elsbetiae_contig5230:5542..55631691683631.5090952-UTR-L-elsbetiae_contig5230:5542..5563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5230 5543..5563 +
1622816537.771347-UTR-L-elsbetiae_contig5230:6199..62831622816537.771347-UTR-L-elsbetiae_contig5230:6199..6283Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5230 6200..6283 +
1691683631.5271478-UTR-L-elsbetiae_contig5230:6199..62831691683631.5271478-UTR-L-elsbetiae_contig5230:6199..6283Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5230 6200..6283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816537.758381-CDS-L-elsbetiae_contig5230:5563..61991622816537.758381-CDS-L-elsbetiae_contig5230:5563..6199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5230 5564..6199 +
1691683631.517653-CDS-L-elsbetiae_contig5230:5563..61991691683631.517653-CDS-L-elsbetiae_contig5230:5563..6199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5230 5564..6199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5230.13342.1

>prot_L-elsbetiae_contig5230.13342.1 ID=prot_L-elsbetiae_contig5230.13342.1|Name=mRNA_L-elsbetiae_contig5230.13342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
MTCRPGCERPGSVLEKSGNDGAAPPTKSRYFVGVSPAVLFVATLSALAFL
TVALGAVVVAGSQALFFFALPLATAAGGAFLVAAPERTPFGTDPTVLLVL
RLAGSVAVAYAGSAMLVGRSGCAGVRAAHLSLVAAALGALAAALAMDESS
VLAEAGGGGGGGGGGERAAALLGRAAVLAAASAMISAAGPAFSRKIQGGK
PAGPAALACPG*
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mRNA from alignment at L-elsbetiae_contig5230:3019..6283+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5230.13342.1 ID=mRNA_L-elsbetiae_contig5230.13342.1|Name=mRNA_L-elsbetiae_contig5230.13342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3265bp|location=Sequence derived from alignment at L-elsbetiae_contig5230:3019..6283+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGGAAGAGAGACTGGACTTCGAGATCAGAGCAGGAAGAGTTTTTGTTG
GCGGAGGAAGGACACGACCATAGCGCGTCGGTTCGAGGTGAGCACACAGC
TGTGTACACATACATCCAGGTTCGCCAAATGCGACTTCTCTCCGCGTCTC
GCCTTTCAAATTAGATATCTCTCTTTCTCGCTCTCGGTTGCCTCACGCCG
GAGGAAGCGTCTAGCAGGAAAGGCATACAGACCATGTCGCTGCTGACGGC
CGTGGAATATATCGCCCCGAAGCCGACGACGTGCGCTCGCCAGGCGCCGG
AGCAGCACGATCCAACCTGGGCGTCCGACATGTGATACGCGCAGCAGACG
CGTGCTTTCCCTTCATCTTGTCTCTAGCCTACCCCCCAAGCGTCGCCCCG
CCCTTCCACATCATACCATAGTGCCTAGTTTGCTGCGCTCTACGTCAATA
TCACAATTGCTCTTAGACGGCCGGTCTTGGTTTTGTTTTGTGGTTGTGAT
CGCTCTTCGCCCTTGAATGCGAGCTAAACCGAGCTGTGGTACATACCGTG
ATCGTGGGCGGACACGAGCACGGAACGGAGAGAGAGAGATATGTAAGAGC
ATTCTGGGTGCACAACATACAATGAGGGGCTATGATATGTGGCTTGTGCT
TTTATTCCCCGTTGTTTTGTTGGGCGCACAAGCAGCATGTGGTGCAGATA
TGCAGCTCGTCATCTACTGCAGTCGAAATCACCAAGCAGTTCTCGCCTGG
TTTCGACATTATTCGCCGATCATGTTTCCAAGCTGGCGGTCTGCACCTTT
CTGTAAAACTCAGTGGGCACTGCAGCAGTACGTATGTAGTAGTTTGGCTT
GGTTGCCTCCATCCTTTGTCACCGTAGAGAGGTGCAGACAAGCTGGCATC
GAAAAGCGGGAGATGAGACTACGCAACAGAACACGGAGTATGTATCGATG
GATAGAATAGAGTCAGTGTGGAAATGGTGGTCACTCTGACAACATATAGA
TATACGGAGGCAGGGCATCACCGGTTGGATCGCCGACCACAGCACTGGTT
TTTCCGAGTCTCACGTATGTAGGTTACATGGGATCCCCATCCCCAGGTAG
CGGCAGCTGTAGATGCGTAGGCATGACGCTCTCTCCTACTGTCTGCCGCT
CTCCCCCACCCCCCAATGAGCGGTCTCCACTCCATGCGCTTGTTGTCCTC
GGTAGGGTCGGTCTCTTGTGAGTATCCGCACGAAAACGTGCAAGCGCTAC
AATACTACTGTCGAGCGCGTTTATGTGTCGTTTACAGAATCGCGAGACTC
TTTCTGTTAACGCAACCGCAAGGACCCTGACACCCGTGCAATACGTATGT
AAGCTTCGAACAACACAGCAGTAGTGTCGATTTTCTGCAAGGGTGACGAC
CGTTTGGCGCGGTGTAATTGTCGATTGTTTATCGCCAGGCACCATGTGTT
CATAAAGTGGCTGTCTCGTTTTCCCGTTACCGGCAGAATGCAAAGTACAG
CCGTTAATACCAAGCACAACAACCGTCTTGGGCGTTTTTTTTTCGAGCAC
CTCACTAATCCTGCTGTCTCGTGTATGCCAAAGGGCAGCTCTGTTAGATA
CCTACCTGATGTTCGACGACAGACGCAGCGGACCATTACCTACCGTTGTG
TATTGTTATTTGATGATTGCTTAAAGAGTACTACAAGAGAGGGGATATAT
CATTCTGGTGAGTCGACCCGTTCCGCAATTCGCACCCCCTTCAGTGGCAT
TTGAAAGTACGGTGTACCGTATTTTGTATGAGAATGAAACCAAGTGCTCT
CCTTTCTAAGTGCTCTCCTTCGTAAGTTCGTACATAAATGTTGGGTGTCC
TGATTTAAGACCCTCCCAAAAAGGAGCATTGCGGAGGCGGGCGTAAACCA
AGTCTTATTGCTCGTCACTCATGTGTGAAGCTCCTTCTCAGTTATCACGT
CTTCCCTGAAAAACATCGCCGTGTCTCGAACCTAAGCACCGTGTCTGAAA
GCACAACCGGAGCGGAGCGACCCTGACTCGGGACCCGCTACAAAGGGCCT
CATGCGGCAATAAATACTCGTGAATAATGTTGCTCGCCCATCACACCGTG
CGCCCTTTTTAAACTCAGACGAGGAAAGGCGACTGCGGCGGAGTCGCAAA
ACCATCACATAGATAACCATCTCACCACGAAAAAGCCAGCATTGCACAGA
CGATAAGTAGCCCACGAAAGTAACCATACAAGTTGGCGCGTGCACGGGGA
GTTACTCAACGATTTCATTTGCCACGAGGCGAGAATATTTCGACCAACAT
GCCGTAGATGACGAAAAGGCAGTTGAACGGCACACGCAAGCAGCAGGCCC
TTCTCAGTGAAACTGGGACCCCCCCCCCACACACACACTCTCCAGCAAAA
CTCAAAATGGCACCACTTTCGGCTGCCCTTTTTGCCATGCTTTCAACGAT
GCACGCCTTGCCTGACCGCGGCCCTATACCCGCCCACCCCTCCTCTCCCC
TCCAATCCCTCGTCCCATCTACAGAACAAGACCGCATAAAAAACAATGAC
TTGCCGGCCAGGCTGCGAGCGCCCGGGCTCCGTCCTCGAGAAGAGCGGCA
ATGACGGCGCGGCCCCCCCGACGAAGAGCCGCTACTTCGTGGGCGTCTCC
CCCGCCGTCCTCTTCGTCGCCACCCTCTCCGCGCTGGCCTTCCTCACGGT
CGCGCTGGGCGCGGTCGTGGTGGCCGGGAGCCAGGCCCTCTTCTTCTTCG
CCCTGCCGCTCGCCACGGCGGCGGGCGGCGCGTTCCTCGTCGCCGCTCCC
GAGAGGACGCCGTTCGGAACCGACCCGACCGTCCTGCTCGTCCTTAGGCT
GGCGGGGAGCGTGGCCGTCGCGTACGCCGGCAGCGCGATGCTCGTCGGGA
GGTCCGGGTGCGCCGGGGTGAGGGCCGCGCACCTGTCGCTGGTGGCGGCG
GCGCTCGGCGCCCTGGCCGCCGCCCTCGCCATGGACGAGTCCAGCGTGCT
CGCCGAGGCCGGCGGCGGCGGTGGCGGCGGTGGCGGCGGGGAGAGGGCGG
CGGCGTTGCTTGGGAGGGCGGCGGTGTTGGCGGCGGCGAGCGCCATGATC
TCTGCCGCTGGCCCCGCCTTCTCGAGGAAGATCCAGGGCGGGAAGCCCGC
CGGACCCGCGGCACTGGCTTGCCCCGGGTGAAGGAAGGGTGGTGACCACC
TCCTGGCTTCGGATGTTGACCTCTTTTGCTGTGCTAAATATTGTACGGAC
GAGCGTGGGCGGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5230:3019..6283+

>mRNA_L-elsbetiae_contig5230.13342.1 ID=mRNA_L-elsbetiae_contig5230.13342.1|Name=mRNA_L-elsbetiae_contig5230.13342.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1272bp|location=Sequence derived from alignment at L-elsbetiae_contig5230:3019..6283+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTTGCCGGCCAGGCTGCGAGCGCCCGGGCTCCGTCCTCGAGAAGAG
CGGCAATGACGGCGCGGCCCCCCCGACGAAGAGCCGCTACTTCGTGGGCG
TCTCCCCCGCCGTCCTCTTCGTCGCCACCCTCTCCGCGCTGGCCTTCCTC
ACGGTCGCGCTGGGCGCGGTCGTGGTGGCCGGGAGCCAGGCCCTCTTCTT
CTTCGCCCTGCCGCTCGCCACGGCGGCGGGCGGCGCGTTCCTCGTCGCCG
CTCCCGAGAGGACGCCGTTCGGAACCGACCCGACCGTCCTGCTCGTCCTT
AGGCTGGCGGGGAGCGTGGCCGTCGCGTACGCCGGCAGCGCGATGCTCGT
CGGGAGGTCCGGGTGCGCCGGGGTGAGGGCCGCGCACCTGTCGCTGGTGG
CGGCGGCGCTCGGCGCCCTGGCCGCCGCCCTCGCCATGGACGAGTCCAGC
GTGCTCGCCGAGGCCGGCGGCGGCGGTGGCGGCGGTGGCGGCGGGGAGAG
GGCGGCGGCGTTGCTTGGGAGGGCGGCGGTGTTGGCGGCGGCGAGCGCCA
TGATCTCTGCCGCTGGCCCCGCCTTCTCGAGGAAGATCCAGGGCGGGAAG
CCCGCCGGACCCGCGGCACTGGCTTGCCCCGGGTGAATGACTTGCCGGCC
AGGCTGCGAGCGCCCGGGCTCCGTCCTCGAGAAGAGCGGCAATGACGGCG
CGGCCCCCCCGACGAAGAGCCGCTACTTCGTGGGCGTCTCCCCCGCCGTC
CTCTTCGTCGCCACCCTCTCCGCGCTGGCCTTCCTCACGGTCGCGCTGGG
CGCGGTCGTGGTGGCCGGGAGCCAGGCCCTCTTCTTCTTCGCCCTGCCGC
TCGCCACGGCGGCGGGCGGCGCGTTCCTCGTCGCCGCTCCCGAGAGGACG
CCGTTCGGAACCGACCCGACCGTCCTGCTCGTCCTTAGGCTGGCGGGGAG
CGTGGCCGTCGCGTACGCCGGCAGCGCGATGCTCGTCGGGAGGTCCGGGT
GCGCCGGGGTGAGGGCCGCGCACCTGTCGCTGGTGGCGGCGGCGCTCGGC
GCCCTGGCCGCCGCCCTCGCCATGGACGAGTCCAGCGTGCTCGCCGAGGC
CGGCGGCGGCGGTGGCGGCGGTGGCGGCGGGGAGAGGGCGGCGGCGTTGC
TTGGGAGGGCGGCGGTGTTGGCGGCGGCGAGCGCCATGATCTCTGCCGCT
GGCCCCGCCTTCTCGAGGAAGATCCAGGGCGGGAAGCCCGCCGGACCCGC
GGCACTGGCTTGCCCCGGGTGA
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