prot_L-elsbetiae_contig5227.13334.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5227.13334.1
Unique Nameprot_L-elsbetiae_contig5227.13334.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length256
Homology
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BLAST of mRNA_L-elsbetiae_contig5227.13334.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 4.620e-52
Identity = 115/175 (65.71%), Postives = 121/175 (69.14%), Query Frame = 0 
Query:   18 GTMPPVSSDPMEVD--GTSPDAAAAXXXXXXXXXXXXXXXXXXXXXXKGGKEED------GVVCPAVTDVIVHPVGAVDGPPELRRLVLAMHLDNGSLLVYEARMSISSSSSMR-REQVVCFSKLCHDLITRPVKGVPPEAAAANPARGRALRAVRSAAGQEGVCFARPGCRSAL 183
            GT  P SSDPMEVD   T+PD+AA                        G            VVCPAVTDVIVHPVGAV GPPELRRLVLAMHLDNGSLLVYEARM +S  ++   REQVVCFSKL HDLITRPVKGVPPEAA  +P RGRALR VRSAAGQEGVCFARPGCRSAL
Sbjct: 1434 GTAAP-SSDPMEVDDGATAPDSAAVDASASGEAPSAPDETVEKAGADAGXXXXXXXXXXXSVVCPAVTDVIVHPVGAVGGPPELRRLVLAMHLDNGSLLVYEARMVVSPLAAFGGREQVVCFSKLSHDLITRPVKGVPPEAALFDPGRGRALRGVRSAAGQEGVCFARPGCRSAL 1607
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5227.13334.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8W8_ECTSI4.620e-5265.71Cleavage and polyadenylation specificity factor CG... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5227contigL-elsbetiae_contig5227:3294..9342 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5227.13334.1mRNA_L-elsbetiae_contig5227.13334.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5227 3294..9344 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5227.13334.1 ID=prot_L-elsbetiae_contig5227.13334.1|Name=mRNA_L-elsbetiae_contig5227.13334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=256bp
RANGAAAAVAAAAPGEEGTMPPVSSDPMEVDGTSPDAAAAAAAAEGAEGS
GKAASAAVAAVGKGGKEEDGVVCPAVTDVIVHPVGAVDGPPELRRLVLAM
HLDNGSLLVYEARMSISSSSSMRREQVVCFSKLCHDLITRPVKGVPPEAA
AANPARGRALRAVRSAAGQEGVCFARPGCRSALILAERGAVCVTAVAQDD
LGDGSGNPPLPPGAPPSWAGIGLGSLAPLYNPDAFPGGARGGGFAGITAG
GGRLRF
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