mRNA_L-elsbetiae_contig5227.13334.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5227.13334.1
Unique NamemRNA_L-elsbetiae_contig5227.13334.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5227.13334.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 4.620e-52
Identity = 115/175 (65.71%), Postives = 121/175 (69.14%), Query Frame = 1 
Query:   52 GTMPPVSSDPMEVD--GTSPDAAAAXXXXXXXXXXXXXXXXXXXXXXKGGKEED------GVVCPAVTDVIVHPVGAVDGPPELRRLVLAMHLDNGSLLVYEARMSISSSSSMR-REQVVCFSKLCHDLITRPVKGVPPEAAAANPARGRALRAVRSAAGQEGVCFARPGCRSAL 549
            GT  P SSDPMEVD   T+PD+AA                        G            VVCPAVTDVIVHPVGAV GPPELRRLVLAMHLDNGSLLVYEARM +S  ++   REQVVCFSKL HDLITRPVKGVPPEAA  +P RGRALR VRSAAGQEGVCFARPGCRSAL
Sbjct: 1434 GTAAP-SSDPMEVDDGATAPDSAAVDASASGEAPSAPDETVEKAGADAGXXXXXXXXXXXSVVCPAVTDVIVHPVGAVGGPPELRRLVLAMHLDNGSLLVYEARMVVSPLAAFGGREQVVCFSKLSHDLITRPVKGVPPEAALFDPGRGRALRGVRSAAGQEGVCFARPGCRSAL 1607
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5227.13334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8W8_ECTSI4.620e-5265.71Cleavage and polyadenylation specificity factor CG... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5227contigL-elsbetiae_contig5227:3294..9344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue6e-47
Seed eggNOG ortholog2880.D7G8W8
KEGG koko:K14401
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG5161@1,KOG1896@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Exons3
Model size772
Cds size768
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5227.13334.1prot_L-elsbetiae_contig5227.13334.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5227 3294..9342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816537.1523805-CDS-L-elsbetiae_contig5227:3293..36711622816537.1523805-CDS-L-elsbetiae_contig5227:3293..3671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5227 3294..3671 +
1691683631.1456325-CDS-L-elsbetiae_contig5227:3293..36711691683631.1456325-CDS-L-elsbetiae_contig5227:3293..3671Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5227 3294..3671 +
1622816537.1622384-CDS-L-elsbetiae_contig5227:4465..46361622816537.1622384-CDS-L-elsbetiae_contig5227:4465..4636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5227 4466..4636 +
1691683631.1561766-CDS-L-elsbetiae_contig5227:4465..46361691683631.1561766-CDS-L-elsbetiae_contig5227:4465..4636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5227 4466..4636 +
1622816537.1802995-CDS-L-elsbetiae_contig5227:9123..93421622816537.1802995-CDS-L-elsbetiae_contig5227:9123..9342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5227 9124..9342 +
1691683631.1643417-CDS-L-elsbetiae_contig5227:9123..93421691683631.1643417-CDS-L-elsbetiae_contig5227:9123..9342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5227 9124..9342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5227.13334.1

>prot_L-elsbetiae_contig5227.13334.1 ID=prot_L-elsbetiae_contig5227.13334.1|Name=mRNA_L-elsbetiae_contig5227.13334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=256bp
RANGAAAAVAAAAPGEEGTMPPVSSDPMEVDGTSPDAAAAAAAAEGAEGS
GKAASAAVAAVGKGGKEEDGVVCPAVTDVIVHPVGAVDGPPELRRLVLAM
HLDNGSLLVYEARMSISSSSSMRREQVVCFSKLCHDLITRPVKGVPPEAA
AANPARGRALRAVRSAAGQEGVCFARPGCRSALILAERGAVCVTAVAQDD
LGDGSGNPPLPPGAPPSWAGIGLGSLAPLYNPDAFPGGARGGGFAGITAG
GGRLRF
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mRNA from alignment at L-elsbetiae_contig5227:3294..9344+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5227.13334.1 ID=mRNA_L-elsbetiae_contig5227.13334.1|Name=mRNA_L-elsbetiae_contig5227.13334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6051bp|location=Sequence derived from alignment at L-elsbetiae_contig5227:3294..9344+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGCGAACGGTGCGGCGGCAGCGGTGGCGGCGGCGGCGCCCGGGGAGGA
AGGCACCATGCCGCCGGTGTCGTCCGACCCTATGGAAGTGGATGGGACCT
CGCCGGATGCCGCCGCCGCCGCCGCCGCCGCTGAAGGTGCGGAGGGCAGT
GGCAAGGCTGCCTCGGCGGCGGTAGCAGCCGTCGGCAAGGGGGGCAAGGA
GGAGGACGGCGTTGTGTGCCCCGCGGTGACGGACGTCATCGTGCACCCGG
TCGGGGCCGTCGACGGCCCCCCCGAGCTCCGCCGGCTGGTGCTCGCGATG
CACCTCGACAACGGGAGTCTTCTGGTGTACGAGGCCAGGATGTCCATCTC
GTCTTCGTCGTCGATGCGGCGAGAGCAGGTAAGCTCCATCGTAGATGAGC
TCCATCGTAGATGGGCTCCATCGGAGATGAGCTCAATCGTAGAGAGGCTC
CATCGCAGATGGGCTCCGTCGTAGATGAGCTCCATCGAACTCAGGGTCCA
AGGAGTTCGATGGAGCCCCTCTACGATGGAGCCCATGACCCTGAGTTCGA
TGGAGCCCATCTACGATGGAGCCCATCTGCGATGGAGCCTCTCTACGATT
GAGCTCATCTACGATGAAGCCCATCTGCGATGGAGCATGGGCTCTCCATC
GTAGATAGGCTCCATCGTAGATAGGCTCCATCGTAGATAGGCTCCATCGT
AGATGCCGGGGCAGTGTAAACACCACATACCACATGTACCTCGCCTCGCC
CGTCTTCCTCCTCCTATTCCTATCGACAGAAGCAAGAAAGAGCCTGCGGA
GCAAGAGAGCTTGCGGTCTCGCCGATTTTTTTCCACGATGTTATTGATTG
CGCCTGCATCCCCCCCCCCCCCTACGCCCCCATCCTGCGGTCTCGCAGAT
TGATTTCCACGATGGTATTGATCTTTGATTGCACCTGCGCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCTTCCCCCCCCTCCCGCGCCCCCGGCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCGCGTTTTC
CCTGCCTGTGCGTCCCCCCCCCCCCCCCGCGCCCAACTCTTCCCGTCTTT
TCCCCATCCTTGTCTCGAAAATCCATAACCGTCCCCCCGACCCCCCGACC
CCTAAATACCGAACAAAAAAAGGTCGTCTGCTTCTCGAAGCTGTGCCACG
ACCTCATCACCCGCCCCGTGAAGGGAGTTCCACCGGAGGCGGCGGCGGCC
AACCCGGCGAGGGGCCGTGCCCTGCGGGCGGTCCGGTCGGCGGCGGGGCA
GGAGGGCGTCTGCTTCGCACGGCCGGGATGCCGATCCGCCCTGGTGAGAG
AAAGAGAGGAAAATACCTTGTATTTGTACATACATATACGAAGGATAACG
CTACATATCATTAGTTTAAATATTTTAATTGTTAATTTCAACGATTTATA
CATACACGAAGTATGTTAACGCTACATATCATTAGTTTAAATATTTTAAT
TGTTTATTTCAACCATTTATACATAAATATACGAAGTATAACGCTACATA
TCATTAATTTAATTATTTTAATTGTCTGTTTCAACGATTTTTTGTTGAAA
TGCTCAGTTTGCTTTTTTGTCTGCCTCGCACTGCCGGGGTGCCGGTCCGG
TCCGGTCCGGTCCGGTTCGCCTTGGTGAGAGAAAGAGAGAGAAAAGTACC
TTGTACTTGTACTTCGATTGGAGTATCAAACATTTAATTATTTTAATTAT
TTTATTTGTTTTATGTACATATATGAACCTTGTCAATTTTGTGTTTCTGC
CGTGTTTTCTCTCTCGGTACTTTGCTTTTTTTCGTGTTTTCTTCTCGACG
ACTCTCAGTAGGACCGTCGGTACATTACCCGTGACCTATGGATCTCGCCA
GGCATCGGTGGTTCGCGTGGTTGCCTCCTAAGAGTCTCCCGCACTGGCTC
TATACGAGGGGTACGATTTCCGAACCACAAAAGCCTCCTCCAAATGGAAG
CTGAGAACCAGAACAGTTAATTGGCAGGACGTTGTTATGTGGAAGCACTG
GTTTGTAGCCGCAGCAGCGGACACAGCAGCATCAGCACTGCAGTATGTAG
CGACAAATCAGCCGTCGCACCCTACAAGAAGAGCACTCGCGACACCGCGT
CTTCACGCAACACACGGGGCATGAGAGATATCCCGCCGAGATCTCGGCTG
ATTCGGATAATCTATCGTGCATTAACCCGAACCCGGGCATTTTAAGCTAA
TAAACAACTGCGGTTTGTGAGGTCTATATTATTTGGCTCTACTAAACCGA
CAGCCCTTCTAAAATATTGCAGCCCATCTATCAACAACGGCTTAACAGTA
GTTACAAGTTTCAACAGACAATTGTGTCCCAAGATTTCAAAATTTTACTC
CAAATCCATTGCGGGAGCTACCTTTGGGTGGATGTGTACACAGTTTATAC
TGCCATTTCCCCAAGGCCCGGCGAATATGTACCAGGCATTATAATCTTGC
GTCACCCCCGGGAGAGCATGAACCGACCCCCCGGAACGGGGAACCTTGTA
TTTACGTATGAAGTATGTATGTATTTCAACGATTGTTGTTGTTGAAATGC
TCTGTTTACTCTTTGTCGGCTTCGCGCGGCCGGGGTGCCGGTCCGGTCCG
CCTTGCTGAGAGAAAGAGAGACAAGATACCTTGCATTATACCTACATACA
TGAGAGTTTCGAAGATTGTTGTTGGCTCAGATTATTGGCTCAGGTTTTTG
TTGGCTCAGATTTTTTTATGTACTTTCAGTAGTTGGAATGTTTTTACTGT
CATATTTATTCTAGTTTGCTTCTTCGCACGGCCGGGGTGCCGGCCCCGGT
CCCCGCCTTTGTGAGAGAAAGAGAGAGAGAGAGAGGGAGATAATATATAC
GAAGTACATAGTACCATCTCTTTTTCTTTCCGTGTTTTTATTTTTTTCAT
CTTATGCTCGCTTCAGTTTGGTTTGTCCGCGGCACCAGAGGTACGTTATG
TATTATTATTATGTATTGTTGTGCGGGTGGGTGACTCTTTTCTTCTTGGG
TGAGAAGGCACTTTTGATTCGTATGTTTTAAAATTCATTGTTTAACCTTC
GGCGTGTGTTGTCCGCACCGACTAGACAGTGCGACGAACGCATCAGTGAG
AGCTCTTCTTGTTCGGCTCGATAAAACAAAAAAATACTCCCATGTATAAA
TATGCACGATGTATATATAAAAAAAAAGCGCATGTATGGTGAAAGCGATA
AAAGCTGAAAAGCTCGTGAGTACCAAACTTCGACGTAATCACGTTGACGA
GGGAAAGGGACAGCTGAACCCTTTTCGCGATAAAACCCAAGGCATGCACC
GCAGGAGGAAGGTGGGGCAAAAAGAAGAAAATAAAAAAGAAGAGAAAGCC
CCAGTGTTCACCTCCTCCTGTGTGACCCCGGTTGGTTCTAGTACAGACAA
ATGCGCTGCAAAGTGTACCGTAATCATCGGGGTCACCGCACACATCGGGG
CTATCGCACCCCTGTGCGGAAAAAAAACGGGTTTCAAATTATTTAATTCG
GCTATCGCACAGGTATCGTGTGCGAAAGCCCCGATATGTGCGGTAACGTT
AGGCGAGATACCACGACGGGCGTCCATCATTTACGCGATGAAACATGCGG
TTGTACAGGGAGCTTGTATCATGGGCTCCTTGTTGTTGAACTTCGGCCGG
GACGCTGCTCAAACGCACTGGCCATTTTTAATGCGTTCAATGTTTACCTA
CTACAGAATGTATTTTTTTATTACTGTCATTGAAAATGGCAGACACTTCC
CACTCATCCAACACCGCGTACCTACCTACCTACCTACCCACCTACGTAGC
ATCGCGTACAAAGCACACGAGAGCAACAAACCCGGCGCTACAAAAAACTG
GTAGTTTAGAAACTTTGAGACGAAGAACTACACATACCTACATCTGGCGA
AGGAACGCTAAGGTGTGCCTACCTACCTACACTGCTCAAACACACAACCG
CTCCTCAACAAGCCATACCCCTGTGCAATCGCAGAGTCCTAGCACCCAGC
TGTTCCCAACTAGGTACTGCACACCACACCCCCGCTGTACTGGCAACCCA
AACAAACGACATTTCACGGCTCCACCACTTCCACACCCCCCTCCCCTTCC
ACGACTTCCACATCGCTGTCGTCGTCCACGATCTCGACATCACAGCTTTG
GGTTTTTTCACAATCGCACATATCGGGGTCATCGCACAGGGGTGTGCGGT
TGTGGTGTAGAACCAAATTATTTAATTCGATTTCCGCACAGGTATCGGTC
ATATGTCACATATCGGGGCTATCGTACCCATGTGCGATAAAAAACTGAGA
ACGACAACATTTAAAAAGTCGATCGCACACTGTGCGGTGACCCCGATGAT
TACGGTAGTACCTCTAAGCACACCGCAAGGTGTAGTACACGTCTCCACTT
GGGGGGACTGTCGCCAAAATAAATGGGAAGGACACACACACACACATGTT
GTACATACATCGTTAGTGCAGCTAAGATTTCGGCACGCGAACTGTCGACT
TCCTAGGTACGCACAATGTATTTATTTATTTACTTTTTTATTTATTTATT
TCCGTGCTTACACCGGTTTTTATGGGAGCGAAAAGTTGGGAGAAAATTTC
AACTTTTTTCCCAACTTTATGTCGAGACTTTTGGTCAGTGAAGCTTTTCT
TGCACGCTCTTTATGGGGCGAACAAAAGTTTGTGCACGGGACTGGTGGAA
TGTGGAGGCGTGATCCTTGATTTTTGTTTCAGCAACGGCGAGATACAAAC
ACACCTCTTCAAACACACCGTGAATACGGCCAGAGCGTCTCACGAAAGCA
TGGTAATCGAGTTGGTGGTATCAAATCTGGCGCTTATGCCTTTCAATCAA
ATTTGGAAGTGCTCTTGTTGGCGAAAAACTAGTCGTGCAGTCTCTATAAT
ACATACGTGTAATATATACACAGCTGCAGGCATCGCAGGCAATTCCAACT
CGTCGTTCAAGTGATCTGAGCCGGCTGTTCATGTGTCGCGCGGATCGGGT
GTGTGTACGTGGCGGTAGAGAGAGATTATTTGTGTGGTGGAGTAGGCACT
TGACGTGGATTGGCTGAAGTCCCGCCGCTCAACTTTTCTTCGCCACATTT
TCTCGTCAAAAGTTTGCAAACTTTTGCTCGCGACCGGGCAAAAGTTTGAC
AAACCAAAAGGTTCGCAACTTTTATCACAACTTTTTGCTCCCATAAAGAG
CGTACATGAGAAAGTTTGAGAGAAAATTTCAGAAACTTTTACTTTTCTCT
CAACTTTTCGCTCCCATAAAAACCAGTGATAAAAACCGGTGTTAGATATG
TATGTAGAACTCATGTAACACATGTTGCATAAGTGCAGCGTCTACTTGAG
GCATGCCTGTTGCGACAAGCAACTCCACAAGGACAGCAGAAGCAGCGACC
CTCATTTCATCACATTTCTCGACAATCGATGAAAGCCGTATAGGCTTTTC
CTGCAACAGAGCTGTGGGAGGGTATTTTTCTAGGAAATTAATAGAGTGAA
AAATCTCCACCATCCGCTTTTTTAAAGTTGGGGGCCCTGCTGAAGGAAGC
CGATCGGTGCTAATTTTGCGAGAAACAACCATAAAGCCGCCACAAAGCAA
TATCAGCACAAAATGCATGTTCGTTCATTCCCCTCCAGATCCTCGCGGAA
AGAAAGGGTCGCCGTATATCATTCATTTTCCCCACTCGCACAACAGTGAC
CCTCGCGAAAAAGGGGGCCCCGCATCTGATCCATTCACCCCTACCCACCT
CTCCCTCCCTCCCTACCCCCCCCCCCCCAGATCCTCGCGGAAAGGGGCGC
CGTGTGCGTAACCGCCGTCGCGCAGGACGACCTCGGCGACGGCTCCGGCA
ACCCCCCCCTACCTCCGGGGGCCCCGCCGTCGTGGGCCGGGATAGGCCTG
GGGTCCCTCGCCCCGCTCTACAACCCCGACGCCTTCCCGGGGGGGGCCCG
GGGGGGGGGGTTCGCCGGGATCACCGCCGGGGGGGGCAGGCTCCGATTCA
T
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5227:3294..9344+

>mRNA_L-elsbetiae_contig5227.13334.1 ID=mRNA_L-elsbetiae_contig5227.13334.1|Name=mRNA_L-elsbetiae_contig5227.13334.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1536bp|location=Sequence derived from alignment at L-elsbetiae_contig5227:3294..9344+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGCGAACGGTGCGGCGGCAGCGGTGGCGGCGGCGGCGCCCGGGGAGGA
AGGCACCATGCCGCCGGTGTCGTCCGACCCTATGGAAGTGGATGGGACCT
CGCCGGATGCCGCCGCCGCCGCCGCCGCCGCTGAAGGTGCGGAGGGCAGT
GGCAAGGCTGCCTCGGCGGCGGTAGCAGCCGTCGGCAAGGGGGGCAAGGA
GGAGGACGGCGTTGTGTGCCCCGCGGTGACGGACGTCATCGTGCACCCGG
TCGGGGCCGTCGACGGCCCCCCCGAGCTCCGCCGGCTGGTGCTCGCGATG
CACCTCGACAACGGGAGTCTTCTGGTGTACGAGGCCAGGATGTCCATCTC
GTCTTCGTCGTCGATGCGGCGAGAGCAGCGAGCGAACGGTGCGGCGGCAG
CGGTGGCGGCGGCGGCGCCCGGGGAGGAAGGCACCATGCCGCCGGTGTCG
TCCGACCCTATGGAAGTGGATGGGACCTCGCCGGATGCCGCCGCCGCCGC
CGCCGCCGCTGAAGGTGCGGAGGGCAGTGGCAAGGCTGCCTCGGCGGCGG
TAGCAGCCGTCGGCAAGGGGGGCAAGGAGGAGGACGGCGTTGTGTGCCCC
GCGGTGACGGACGTCATCGTGCACCCGGTCGGGGCCGTCGACGGCCCCCC
CGAGCTCCGCCGGCTGGTGCTCGCGATGCACCTCGACAACGGGAGTCTTC
TGGTGTACGAGGCCAGGATGTCCATCTCGTCTTCGTCGTCGATGCGGCGA
GAGCAGGTCGTCTGCTTCTCGAAGCTGTGCCACGACCTCATCACCCGCCC
CGTGAAGGGAGTTCCACCGGAGGCGGCGGCGGCCAACCCGGCGAGGGGCC
GTGCCCTGCGGGCGGTCCGGTCGGCGGCGGGGCAGGAGGGCGTCTGCTTC
GCACGGCCGGGATGCCGATCCGCCCTGGTCGTCTGCTTCTCGAAGCTGTG
CCACGACCTCATCACCCGCCCCGTGAAGGGAGTTCCACCGGAGGCGGCGG
CGGCCAACCCGGCGAGGGGCCGTGCCCTGCGGGCGGTCCGGTCGGCGGCG
GGGCAGGAGGGCGTCTGCTTCGCACGGCCGGGATGCCGATCCGCCCTGAT
CCTCGCGGAAAGGGGCGCCGTGTGCGTAACCGCCGTCGCGCAGGACGACC
TCGGCGACGGCTCCGGCAACCCCCCCCTACCTCCGGGGGCCCCGCCGTCG
TGGGCCGGGATAGGCCTGGGGTCCCTCGCCCCGCTCTACAACCCCGACGC
CTTCCCGGGGGGGGCCCGGGGGGGGGGGTTCGCCGGGATCACCGCCGGGG
GGGGCAGGCTCCGATTCATCCTCGCGGAAAGGGGCGCCGTGTGCGTAACC
GCCGTCGCGCAGGACGACCTCGGCGACGGCTCCGGCAACCCCCCCCTACC
TCCGGGGGCCCCGCCGTCGTGGGCCGGGATAGGCCTGGGGTCCCTCGCCC
CGCTCTACAACCCCGACGCCTTCCCGGGGGGGGCCCGGGGGGGGGGGTTC
GCCGGGATCACCGCCGGGGGGGGCAGGCTCCGATTC
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