prot_L-elsbetiae_contig5219.13324.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5219.13324.1
Unique Nameprot_L-elsbetiae_contig5219.13324.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length49
Homology
BLAST of mRNA_L-elsbetiae_contig5219.13324.1 vs. uniprot
Match: A0A6H5JWZ4_9PHAE (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.190e-20
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 0
Query:    1 SELFLERFATQAFGHAEKLGRKTIKYRDVSDIRVKDPNLLFLEAVVPP 48
            SE+FLE+FA +AF HAEKLGRKTIKYRDVSD+R++DPNLLFLEAVVPP
Sbjct:  166 SEIFLEKFAARAFDHAEKLGRKTIKYRDVSDVRLEDPNLLFLEAVVPP 213          
BLAST of mRNA_L-elsbetiae_contig5219.13324.1 vs. uniprot
Match: D8LBX1_ECTSI (Histone-like transcription factor family (CBF/NF-Y) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX1_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.270e-19
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 0
Query:    1 SELFLERFATQAFGHAEKLGRKTIKYRDVSDIRVKDPNLLFLEAVVPP 48
            SE+FLE+ A +AF HAEKLGRKTIKYRDVSD+RV+DPNLLFLEAVVPP
Sbjct:  170 SEIFLEKLAARAFDHAEKLGRKTIKYRDVSDVRVEDPNLLFLEAVVPP 217          
BLAST of mRNA_L-elsbetiae_contig5219.13324.1 vs. uniprot
Match: A0A6V1PCP5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PCP5_HETAK)

HSP 1 Score: 59.7 bits (143), Expect = 7.790e-10
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0
Query:    3 LFLERFATQAFGHAEKLGRKTIKYRDVSDIRVKDPNLLFLEAVVP 47
            LFLE+FA  +F  A+  G K I+Y DV+D RV DPNLLFLE V+P
Sbjct:  107 LFLEKFAQDSFAKAQTRGAKMIRYEDVADARVSDPNLLFLEGVIP 151          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5219.13324.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWZ4_9PHAE4.190e-2083.33CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ec... [more]
D8LBX1_ECTSI1.270e-1983.33Histone-like transcription factor family (CBF/NF-Y... [more]
A0A6V1PCP5_HETAK7.790e-1060.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009072Histone-foldGENE3D1.10.20.10coord: 1..48
e-value: 2.1E-8
score: 36.2
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 2..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5219contigL-elsbetiae_contig5219:7012..7158 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5219.13324.1mRNA_L-elsbetiae_contig5219.13324.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5219 7012..7158 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5219.13324.1 ID=prot_L-elsbetiae_contig5219.13324.1|Name=mRNA_L-elsbetiae_contig5219.13324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=49bp
SELFLERFATQAFGHAEKLGRKTIKYRDVSDIRVKDPNLLFLEAVVPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold