prot_L-elsbetiae_contig4864.12777.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig4864.12777.1
Unique Nameprot_L-elsbetiae_contig4864.12777.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length321
Homology
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BLAST of mRNA_L-elsbetiae_contig4864.12777.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.860e-29
Identity = 54/101 (53.47%), Postives = 66/101 (65.35%), Query Frame = 0 
Query:  103 SCCKACVTPKRPVYCCRVCRKLFHGLCAGYSPTKRQVPPPDWICPNCPNGERGPSGRVHQSLKGKGVVNQKLGNMPWCPICLSDNRISGKKEIGAIERCPG 203
            +C K       P + CR CRKL+H  C GY+   RQ PPPDWICP+CP GERGPS +VH S+ GKG V Q+ GNMPWCPICL D+R+   K +G +    G
Sbjct:  124 ACGKVFTRDVHPSFACRACRKLYHRSCVGYANRARQSPPPDWICPHCPGGERGPSPQVHLSVAGKGTVKQRKGNMPWCPICLRDDRLPNSKLVGRLNSGSG 224
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BLAST of mRNA_L-elsbetiae_contig4864.12777.1 vs. uniprot
Match: D8LKX6_ECTSI (Similar to ubiquitin specific protease 48 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKX6_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 4.760e-28
Identity = 64/126 (50.79%), Postives = 78/126 (61.90%), Query Frame = 0 
Query:  153 ERGPSG-RVHQSLKGKG--VVNQKLGNMPWCPICLSDNRISGKKEIGA-IERCPGCNFHTHAQC-------------LAGLQVWQDGSWPCDECDRRRHGVVP--GNNPVWLRLKAARLDGGRKLT 259
            E GP    +H+SL+GKG    +Q  GN PWCP CL DNR+ G+K +G+  +RCPGC  HTHA+C               G     DGSW CDEC RR  GVV   G++PVWLRLKAARLDGG K++
Sbjct:  525 EHGPDDTHLHESLRGKGGAAPSQPRGNQPWCPNCLGDNRLPGEKTMGSDSKRCPGCGLHTHARCRRKRPEASPGAAGATGGXXAADGSWACDECKRREDGVVVAGGDDPVWLRLKAARLDGGFKVS 650
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BLAST of mRNA_L-elsbetiae_contig4864.12777.1 vs. uniprot
Match: A0A6H5L6A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.840e-7
Identity = 33/78 (42.31%), Postives = 38/78 (48.72%), Query Frame = 0 
Query:  199 ERCPGCNFHTHAQCLAGLQVWQD---------------GSWPCDECDRRRHGVV--PGNNPVWLRLKAARLDGGRKLT 259
            +RCPGC  HT                            GSW CDEC RR  GV     ++PVWLRLKAARLDGG K++
Sbjct:    6 KRCPGCGLHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSWACDECKRREDGVAVASADDPVWLRLKAARLDGGFKVS 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4864.12777.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUF2_ECTSI1.860e-2953.47PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D8LKX6_ECTSI4.760e-2850.79Similar to ubiquitin specific protease 48 n=1 Tax=... [more]
A0A6H5L6A7_9PHAE2.840e-742.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 104..150
e-value: 0.096
score: 21.8
coord: 179..230
e-value: 14.0
score: 4.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 166..235
e-value: 2.7E-5
score: 25.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 53..155
e-value: 2.3E-9
score: 39.1
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 180..229
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 105..149
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 102..152
score: 8.707
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 175..237
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 103..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4864contigL-elsbetiae_contig4864:2143..3105 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4864.12777.1mRNA_L-elsbetiae_contig4864.12777.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig4864 2143..3106 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig4864.12777.1 ID=prot_L-elsbetiae_contig4864.12777.1|Name=mRNA_L-elsbetiae_contig4864.12777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=321bp
GPKSSKVISVGAGAGAGAGAGVDEAAAAAAATVVDVVVAGSKASLDPALK
ENHDHHQPSSSNSAGRRRAMAKGAPADSVARVSSRRRRNSTSGRRASDDN
ITSCCKACVTPKRPVYCCRVCRKLFHGLCAGYSPTKRQVPPPDWICPNCP
NGERGPSGRVHQSLKGKGVVNQKLGNMPWCPICLSDNRISGKKEIGAIER
CPGCNFHTHAQCLAGLQVWQDGSWPCDECDRRRHGVVPGNNPVWLRLKAA
RLDGGRKLTWTHLPPSLGATGAAPPVTAPADSPNSGATGSLEGSAPSSGN
TPATVDTGGALCEPTEARSPL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD