mRNA_L-elsbetiae_contig4864.12777.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4864.12777.1
Unique NamemRNA_L-elsbetiae_contig4864.12777.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4864.12777.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.860e-29
Identity = 54/101 (53.47%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:  307 SCCKACVTPKRPVYCCRVCRKLFHGLCAGYSPTKRQVPPPDWICPNCPNGERGPSGRVHQSLKGKGVVNQKLGNMPWCPICLSDNRISGKKEIGAIERCPG 609
            +C K       P + CR CRKL+H  C GY+   RQ PPPDWICP+CP GERGPS +VH S+ GKG V Q+ GNMPWCPICL D+R+   K +G +    G
Sbjct:  124 ACGKVFTRDVHPSFACRACRKLYHRSCVGYANRARQSPPPDWICPHCPGGERGPSPQVHLSVAGKGTVKQRKGNMPWCPICLRDDRLPNSKLVGRLNSGSG 224
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BLAST of mRNA_L-elsbetiae_contig4864.12777.1 vs. uniprot
Match: D8LKX6_ECTSI (Similar to ubiquitin specific protease 48 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKX6_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 4.760e-28
Identity = 64/126 (50.79%), Postives = 78/126 (61.90%), Query Frame = 1 
Query:  457 ERGPSG-RVHQSLKGKG--VVNQKLGNMPWCPICLSDNRISGKKEIGA-IERCPGCNFHTHAQC-------------LAGLQVWQDGSWPCDECDRRRHGVVP--GNNPVWLRLKAARLDGGRKLT 777
            E GP    +H+SL+GKG    +Q  GN PWCP CL DNR+ G+K +G+  +RCPGC  HTHA+C               G     DGSW CDEC RR  GVV   G++PVWLRLKAARLDGG K++
Sbjct:  525 EHGPDDTHLHESLRGKGGAAPSQPRGNQPWCPNCLGDNRLPGEKTMGSDSKRCPGCGLHTHARCRRKRPEASPGAAGATGGXXAADGSWACDECKRREDGVVVAGGDDPVWLRLKAARLDGGFKVS 650
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BLAST of mRNA_L-elsbetiae_contig4864.12777.1 vs. uniprot
Match: A0A6H5L6A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.840e-7
Identity = 33/78 (42.31%), Postives = 38/78 (48.72%), Query Frame = 1 
Query:  595 ERCPGCNFHTHAQCLAGLQVWQD---------------GSWPCDECDRRRHGVV--PGNNPVWLRLKAARLDGGRKLT 777
            +RCPGC  HT                            GSW CDEC RR  GV     ++PVWLRLKAARLDGG K++
Sbjct:    6 KRCPGCGLHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSWACDECKRREDGVAVASADDPVWLRLKAARLDGGFKVS 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4864.12777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUF2_ECTSI1.860e-2953.47PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D8LKX6_ECTSI4.760e-2850.79Similar to ubiquitin specific protease 48 n=1 Tax=... [more]
A0A6H5L6A7_9PHAE2.840e-742.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4864contigL-elsbetiae_contig4864:2143..3106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue2.5e-26
Seed eggNOG ortholog2880.D8LKX6
Preferred nameUSP48
KEGG koko:K02911,ko:K06255,ko:K11858
KEGG Pathwayko03010,ko04512,ko05161,ko05205,map03010,map04512,map05161,map05205
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0007275,GO:0008150,GO:0009791,GO:0010154,GO:0016020,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044464,GO:0045121,GO:0045202,GO:0045211,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070013,GO:0071944,GO:0097060,GO:0098589,GO:0098590,GO:0098794,GO:0098805,GO:0098857
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1863@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko00535,ko01000,ko01002,ko03011,ko03029,ko04121,ko04147,ko04516
Exons1
Model size965
Cds size963
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816478.9828136-CDS-L-elsbetiae_contig4864:2142..31051622816478.9828136-CDS-L-elsbetiae_contig4864:2142..3105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4864 2143..3105 +
1691683589.4774423-CDS-L-elsbetiae_contig4864:2142..31051691683589.4774423-CDS-L-elsbetiae_contig4864:2142..3105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4864 2143..3105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4864.12777.1prot_L-elsbetiae_contig4864.12777.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4864 2143..3105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4864.12777.1

>prot_L-elsbetiae_contig4864.12777.1 ID=prot_L-elsbetiae_contig4864.12777.1|Name=mRNA_L-elsbetiae_contig4864.12777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=321bp
GPKSSKVISVGAGAGAGAGAGVDEAAAAAAATVVDVVVAGSKASLDPALK
ENHDHHQPSSSNSAGRRRAMAKGAPADSVARVSSRRRRNSTSGRRASDDN
ITSCCKACVTPKRPVYCCRVCRKLFHGLCAGYSPTKRQVPPPDWICPNCP
NGERGPSGRVHQSLKGKGVVNQKLGNMPWCPICLSDNRISGKKEIGAIER
CPGCNFHTHAQCLAGLQVWQDGSWPCDECDRRRHGVVPGNNPVWLRLKAA
RLDGGRKLTWTHLPPSLGATGAAPPVTAPADSPNSGATGSLEGSAPSSGN
TPATVDTGGALCEPTEARSPL
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mRNA from alignment at L-elsbetiae_contig4864:2143..3106+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4864.12777.1 ID=mRNA_L-elsbetiae_contig4864.12777.1|Name=mRNA_L-elsbetiae_contig4864.12777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=964bp|location=Sequence derived from alignment at L-elsbetiae_contig4864:2143..3106+ (Laminarionema elsbetiae ELsaHSoW15)
GGACCCAAAAGCAGCAAGGTGATATCTGTTGGTGCCGGTGCCGGTGCCGG
TGCCGGTGCTGGTGTTGATGAAGCGGCGGCGGCAGCAGCAGCAACAGTAG
TGGACGTTGTAGTAGCAGGTTCAAAAGCTTCACTTGACCCCGCCCTCAAG
GAGAACCACGACCACCATCAGCCGAGCAGTAGCAACTCTGCAGGACGGCG
CAGAGCCATGGCGAAGGGGGCACCAGCAGATTCAGTAGCAAGAGTCAGCA
GCAGGAGAAGGAGAAACTCTACCTCTGGAAGGAGAGCCAGCGATGATAAC
ATCACTAGCTGCTGCAAGGCGTGCGTCACTCCGAAGCGACCCGTGTATTG
CTGCCGGGTTTGCCGTAAGCTCTTCCACGGCTTGTGCGCTGGGTACAGCC
CCACAAAGAGACAGGTCCCTCCCCCCGATTGGATTTGTCCCAACTGCCCA
AACGGCGAGCGTGGTCCTAGTGGGAGGGTCCACCAATCTCTGAAGGGAAA
AGGCGTCGTGAACCAAAAACTTGGGAACATGCCGTGGTGTCCAATCTGCT
TGAGCGACAACAGGATTTCCGGCAAGAAAGAGATAGGTGCCATCGAGAGG
TGTCCCGGCTGCAACTTCCACACCCACGCGCAGTGCCTAGCGGGCCTTCA
GGTCTGGCAGGACGGCAGTTGGCCTTGCGACGAGTGCGACCGGCGGCGGC
ACGGCGTTGTACCAGGCAACAACCCCGTCTGGCTGCGGCTCAAGGCTGCG
AGGCTAGACGGTGGTCGAAAGCTGACTTGGACTCACCTACCGCCATCCCT
TGGAGCTACGGGTGCCGCTCCCCCGGTCACCGCCCCCGCCGACTCACCAA
ACTCGGGCGCGACCGGCTCCTTGGAAGGCTCTGCCCCATCCAGTGGCAAT
ACACCAGCAACGGTGGACACGGGTGGAGCGCTGTGTGAGCCAACCGAGGC
CAGGTCACCCCTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4864:2143..3106+

>mRNA_L-elsbetiae_contig4864.12777.1 ID=mRNA_L-elsbetiae_contig4864.12777.1|Name=mRNA_L-elsbetiae_contig4864.12777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1926bp|location=Sequence derived from alignment at L-elsbetiae_contig4864:2143..3106+ (Laminarionema elsbetiae ELsaHSoW15)
GGACCCAAAAGCAGCAAGGTGATATCTGTTGGTGCCGGTGCCGGTGCCGG
TGCCGGTGCTGGTGTTGATGAAGCGGCGGCGGCAGCAGCAGCAACAGTAG
TGGACGTTGTAGTAGCAGGTTCAAAAGCTTCACTTGACCCCGCCCTCAAG
GAGAACCACGACCACCATCAGCCGAGCAGTAGCAACTCTGCAGGACGGCG
CAGAGCCATGGCGAAGGGGGCACCAGCAGATTCAGTAGCAAGAGTCAGCA
GCAGGAGAAGGAGAAACTCTACCTCTGGAAGGAGAGCCAGCGATGATAAC
ATCACTAGCTGCTGCAAGGCGTGCGTCACTCCGAAGCGACCCGTGTATTG
CTGCCGGGTTTGCCGTAAGCTCTTCCACGGCTTGTGCGCTGGGTACAGCC
CCACAAAGAGACAGGTCCCTCCCCCCGATTGGATTTGTCCCAACTGCCCA
AACGGCGAGCGTGGTCCTAGTGGGAGGGTCCACCAATCTCTGAAGGGAAA
AGGCGTCGTGAACCAAAAACTTGGGAACATGCCGTGGTGTCCAATCTGCT
TGAGCGACAACAGGATTTCCGGCAAGAAAGAGATAGGTGCCATCGAGAGG
TGTCCCGGCTGCAACTTCCACACCCACGCGCAGTGCCTAGCGGGCCTTCA
GGTCTGGCAGGACGGCAGTTGGCCTTGCGACGAGTGCGACCGGCGGCGGC
ACGGCGTTGTACCAGGCAACAACCCCGTCTGGCTGCGGCTCAAGGCTGCG
AGGCTAGACGGTGGTCGAAAGCTGACTTGGACTCACCTACCGCCATCCCT
TGGAGCTACGGGTGCCGCTCCCCCGGTCACCGCCCCCGCCGACTCACCAA
ACTCGGGCGCGACCGGCTCCTTGGAAGGCTCTGCCCCATCCAGTGGCAAT
ACACCAGCAACGGTGGACACGGGTGGAGCGCTGTGTGAGCCAACCGAGGC
CAGGTCACCCCTCGGACCCAAAAGCAGCAAGGTGATATCTGTTGGTGCCG
GTGCCGGTGCCGGTGCCGGTGCTGGTGTTGATGAAGCGGCGGCGGCAGCA
GCAGCAACAGTAGTGGACGTTGTAGTAGCAGGTTCAAAAGCTTCACTTGA
CCCCGCCCTCAAGGAGAACCACGACCACCATCAGCCGAGCAGTAGCAACT
CTGCAGGACGGCGCAGAGCCATGGCGAAGGGGGCACCAGCAGATTCAGTA
GCAAGAGTCAGCAGCAGGAGAAGGAGAAACTCTACCTCTGGAAGGAGAGC
CAGCGATGATAACATCACTAGCTGCTGCAAGGCGTGCGTCACTCCGAAGC
GACCCGTGTATTGCTGCCGGGTTTGCCGTAAGCTCTTCCACGGCTTGTGC
GCTGGGTACAGCCCCACAAAGAGACAGGTCCCTCCCCCCGATTGGATTTG
TCCCAACTGCCCAAACGGCGAGCGTGGTCCTAGTGGGAGGGTCCACCAAT
CTCTGAAGGGAAAAGGCGTCGTGAACCAAAAACTTGGGAACATGCCGTGG
TGTCCAATCTGCTTGAGCGACAACAGGATTTCCGGCAAGAAAGAGATAGG
TGCCATCGAGAGGTGTCCCGGCTGCAACTTCCACACCCACGCGCAGTGCC
TAGCGGGCCTTCAGGTCTGGCAGGACGGCAGTTGGCCTTGCGACGAGTGC
GACCGGCGGCGGCACGGCGTTGTACCAGGCAACAACCCCGTCTGGCTGCG
GCTCAAGGCTGCGAGGCTAGACGGTGGTCGAAAGCTGACTTGGACTCACC
TACCGCCATCCCTTGGAGCTACGGGTGCCGCTCCCCCGGTCACCGCCCCC
GCCGACTCACCAAACTCGGGCGCGACCGGCTCCTTGGAAGGCTCTGCCCC
ATCCAGTGGCAATACACCAGCAACGGTGGACACGGGTGGAGCGCTGTGTG
AGCCAACCGAGGCCAGGTCACCCCTC
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