prot_L-elsbetiae_contig4863.12776.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig4863.12776.1
Unique Name	prot_L-elsbetiae_contig4863.12776.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	96

Homology

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BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.180e-29
Identity = 63/90 (70.00%), Postives = 68/90 (75.56%), Query Frame = 0

Query:    1 MVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 90
            MV K RNEL TR DPEGR TV DRLAKLK+P TLMPVGRLD          YNTEG++LLTND DLAR +ELPSS+IVRTYS RVY N S
Sbjct:  214 MVHKMRNELVTRDDPEGRPTVFDRLAKLKLPDTLMPVGRLD----------YNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGNGS 293

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BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.260e-29
Identity = 62/90 (68.89%), Postives = 69/90 (76.67%), Query Frame = 0

Query:    1 MVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 90
            MV K RNEL TRHDPEGR TV DRL KLK+P TLMPVGRLD          YNTEG++LLTND DLAR +ELPSS+IVRTYS RVY N++
Sbjct:  196 MVHKMRNELVTRHDPEGRPTVFDRLTKLKLPDTLMPVGRLD----------YNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGNIT 275

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BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: G4YGT7_PHYSP (PseudoU_synth_2 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YGT7_PHYSP)

HSP 1 Score: 75.1 bits (183), Expect = 2.270e-14
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 0

Query:    1 MVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 90
            M  K + EL T +DP+GRAT+ DRL  + +   +MPVGRLD          +NTEG++L TND D AR +E P +++ R Y A V  N++
Sbjct:   57 MAHKMKGELVTSNDPQGRATIFDRLRVMGLTQHMMPVGRLD----------FNTEGLLLFTNDGDYARELEHPKTEVTRVYRALVRGNVA 136

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BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A024G425_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G425_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 9.230e-14
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 0

Query:    1 MVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENM 89
            +  K + EL T  DP+GR+T+ DR  ++ +   LMPVGRLD          YNTEG+++LTND + AR +E P S + RTY A V  N+
Sbjct:   64 LAHKLKGELVTTEDPQGRSTIFDRFRQMGLKQHLMPVGRLD----------YNTEGLLILTNDGEYARQLEHPKSCVQRTYRAFVRGNV 142

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BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A6A3MSD4_9STRA (S4 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MSD4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.040e-13
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 0

Query:    1 MVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 90
            M  K + EL T  DP+GRAT+ DRL  + +   +MPVGRLD          +NTEG++L TND D AR +E P +++ R Y A V  N++
Sbjct:  133 MAHKMKGELVTSSDPQGRATIFDRLRVMGLTQHMMPVGRLD----------FNTEGLLLFTNDGDYARELEHPKTEVTRVYRALVRGNVA 212

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BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: H3GHV3_PHYRM (S4 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHV3_PHYRM)

HSP 1 Score: 74.3 bits (181), Expect = 1.150e-13
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 0

Query:    1 MVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 90
            M  K + EL T  DP+GRAT+ DR+  + +   +MPVGRLD          +NTEG++L TND D AR +E P +++ R Y A V  N++
Sbjct:  146 MAHKLKGELVTSSDPQGRATIFDRMRVMGLAQHMMPVGRLD----------FNTEGLMLFTNDGDYARTLEHPKTEVTRVYRALVRGNVA 225

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BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A2P4YDC7_9STRA (RNA pseudouridine synthase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4YDC7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.220e-13
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = 0

Query:    1 MVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 90
            M  K + EL T  DP+GRAT+ DRL  + +   +MPVGRLD          +NTEG++L TND D AR +E P + + R Y A V  N++
Sbjct:   57 MAHKIKGELVTNSDPQGRATIFDRLRVMGLTQHMMPVGRLD----------FNTEGLLLFTNDGDYAREMEHPKTGVTRVYRALVRGNVA 136

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BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A484DRS7_BRELC (S4 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRS7_BRELC)

HSP 1 Score: 73.9 bits (180), Expect = 1.300e-13
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = 0

Query:    1 MVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 90
            M  K + EL T  DP+GRAT+ DRL  + +   +MPVGRLD          YNTEG++LLTN+ D AR +E P + + R Y A V  N++
Sbjct:  123 MAHKLKGELVTTSDPQGRATIFDRLRLMGLTQHMMPVGRLD----------YNTEGLLLLTNNGDYARELEHPKTGVTRVYRAFVRGNVT 202

[Close]

BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A329SE75_9STRA (S4 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SE75_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.360e-13
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = 0

Query:    1 MVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 90
            M  K + EL T  DP+GRAT+ DRL  + +   +MPVGRLD          +NTEG++L TND D AR +E P ++I R Y A V  N++
Sbjct:  126 MAHKMKGELVTSSDPQGRATIFDRLRVMGLAQHMMPVGRLD----------FNTEGLLLFTNDGDYARELEHPKTEISRVYRALVRGNVA 205

[Close]

BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A3M6VPW5_9STRA (S4 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPW5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.770e-13
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = 0

Query:    1 MVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 90
            M  K + EL T  DP GRAT+ DRL  + +   +MPVGRLD          +NTEG++L TND D AR +E P ++I R Y A V  N++
Sbjct:  118 MAHKLKGELVTNSDPLGRATIFDRLRVMGLTQHMMPVGRLD----------FNTEGLLLFTNDGDYARKLEHPKTEITRVYRALVRGNVA 197

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J9J6_9PHAE	1.180e-29	70.00	S4 domain-containing protein n=1 Tax=Ectocarpus sp...	[more]
D8LDE8_ECTSI	2.260e-29	68.89	RNA pseudouridylate synthase domain-containing pro...	[more]
G4YGT7_PHYSP	2.270e-14	43.33	PseudoU_synth_2 domain-containing protein n=1 Tax=...	[more]
A0A024G425_9STRA	9.230e-14	43.82	PseudoU_synth_2 domain-containing protein n=1 Tax=...	[more]
A0A6A3MSD4_9STRA	1.040e-13	43.33	S4 domain-containing protein n=5 Tax=Phytophthora ...	[more]
H3GHV3_PHYRM	1.150e-13	42.22	S4 domain-containing protein n=1 Tax=Phytophthora ...	[more]
A0A2P4YDC7_9STRA	1.220e-13	43.33	RNA pseudouridine synthase n=2 Tax=Phytophthora Ta...	[more]
A0A484DRS7_BRELC	1.300e-13	44.44	S4 domain-containing protein n=1 Tax=Bremia lactuc...	[more]
A0A329SE75_9STRA	1.360e-13	44.44	S4 domain-containing protein n=2 Tax=Phytophthora ...	[more]
A0A3M6VPW5_9STRA	1.770e-13	44.44	S4 domain-containing protein n=1 Tax=Peronospora e...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.580		coord: 1..71 e-value: 8.5E-14 score: 53.6
None	No IPR available	PANTHER	PTHR21600:SF2	RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B	coord: 2..92
None	No IPR available	PANTHER	PTHR21600	RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B	coord: 2..92
IPR042092	Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain	GENE3D	3.30.70.1560		coord: 72..90 e-value: 8.5E-14 score: 53.6
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 2..90

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig4863	contig	L-elsbetiae_contig4863:8205..9771 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig4863.12776.1	mRNA_L-elsbetiae_contig4863.12776.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig4863 8205..10164 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig4863.12776.1 ID=prot_L-elsbetiae_contig4863.12776.1|Name=mRNA_L-elsbetiae_contig4863.12776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLL
LYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMSMTSYYE

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR042092	PsdUridine_s_RsuA/RluB/E/F_cat
IPR020103	PsdUridine_synth_cat_dom_sf