mRNA_L-elsbetiae_contig4863.12776.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4863.12776.1
Unique NamemRNA_L-elsbetiae_contig4863.12776.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 7.300e-39
Identity = 75/107 (70.09%), Postives = 81/107 (75.70%), Query Frame = 1
Query:   61 AKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 381
            A G+ LERPE H PKLWMV K RNEL TR DPEGR TV DRLAKLK+P TLMPVGRLD          YNTEG++LLTND DLAR +ELPSS+IVRTYS RVY N S
Sbjct:  197 ALGKVLERPESHTPKLWMVHKMRNELVTRDDPEGRPTVFDRLAKLKLPDTLMPVGRLD----------YNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGNGS 293          
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 4.660e-38
Identity = 73/105 (69.52%), Postives = 81/105 (77.14%), Query Frame = 1
Query:   67 GRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 381
            G+ LERPE H PKLWMV K RNEL TRHDPEGR TV DRL KLK+P TLMPVGRLD          YNTEG++LLTND DLAR +ELPSS+IVRTYS RVY N++
Sbjct:  181 GKVLERPESHTPKLWMVHKMRNELVTRHDPEGRPTVFDRLTKLKLPDTLMPVGRLD----------YNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGNIT 275          
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A484DRS7_BRELC (S4 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRS7_BRELC)

HSP 1 Score: 84.7 bits (208), Expect = 4.660e-17
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   49 NIVKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 381
            ++V   GR L  P+    K+WM  K + EL T  DP+GRAT+ DRL  + +   +MPVGRLD          YNTEG++LLTN+ D AR +E P + + R Y A V  N++
Sbjct:  104 DVVAVDGRVL--PKTQQVKIWMAHKLKGELVTTSDPQGRATIFDRLRLMGLTQHMMPVGRLD----------YNTEGLLLLTNNGDYARELEHPKTGVTRVYRAFVRGNVT 202          
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: G4YGT7_PHYSP (PseudoU_synth_2 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YGT7_PHYSP)

HSP 1 Score: 83.6 bits (205), Expect = 4.980e-17
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   49 NIVKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 381
            ++V   GR L + +    K+WM  K + EL T +DP+GRAT+ DRL  + +   +MPVGRLD          +NTEG++L TND D AR +E P +++ R Y A V  N++
Sbjct:   38 DVVAVDGRVLTKAQKV--KVWMAHKMKGELVTSNDPQGRATIFDRLRVMGLTQHMMPVGRLD----------FNTEGLLLFTNDGDYARELEHPKTEVTRVYRALVRGNVA 136          
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A2P4YDC7_9STRA (RNA pseudouridine synthase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4YDC7_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.980e-17
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   49 NIVKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 381
            ++V   GR L R +    K+WM  K + EL T  DP+GRAT+ DRL  + +   +MPVGRLD          +NTEG++L TND D AR +E P + + R Y A V  N++
Sbjct:   38 DVVSVDGRVLTRTQKV--KVWMAHKIKGELVTNSDPQGRATIFDRLRVMGLTQHMMPVGRLD----------FNTEGLLLFTNDGDYAREMEHPKTGVTRVYRALVRGNVA 136          
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A329SE75_9STRA (S4 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SE75_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.700e-17
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   49 NIVKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 381
            ++V+  GR L + +    K+WM  K + EL T  DP+GRAT+ DRL  + +   +MPVGRLD          +NTEG++L TND D AR +E P ++I R Y A V  N++
Sbjct:  107 DVVEVDGRVLSKAQKI--KIWMAHKMKGELVTSSDPQGRATIFDRLRVMGLAQHMMPVGRLD----------FNTEGLLLFTNDGDYARELEHPKTEISRVYRALVRGNVA 205          
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A024G425_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G425_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.050e-16
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1
Query:   22 NPGAKRGSPNIVKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENM 378
            NP   R + N +    R  E     P K+W+  K + EL T  DP+GR+T+ DR  ++ +   LMPVGRLD          YNTEG+++LTND + AR +E P S + RTY A V  N+
Sbjct:   34 NPQVDRVTVNGIDLMLRKQEANAPSPIKVWLAHKLKGELVTTEDPQGRSTIFDRFRQMGLKQHLMPVGRLD----------YNTEGLLILTNDGEYARQLEHPKSCVQRTYRAFVRGNV 142          
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A850KIC0_9HYPH (Pseudouridine synthase n=1 Tax=Methylocystaceae bacterium TaxID=2052174 RepID=A0A850KIC0_9HYPH)

HSP 1 Score: 83.2 bits (204), Expect = 1.670e-16
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 1
Query:   49 NIVKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVY 369
            NIV   G+AL  P+  PP++W   K R  + T  DPEGR TV D+L K  MP  ++ VGRLD          +NTEG++LLTND +LAR +E P++ +VR Y  RV+
Sbjct:   55 NIVVVDGKAL--PDKQPPRMWKFHKARGLITTNSDPEGRPTVFDQLPK-NMP-RMISVGRLD----------FNTEGLLLLTNDGELARYLEKPANAMVRRYRVRVH 147          
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A6A3MSD4_9STRA (S4 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MSD4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.030e-16
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   49 NIVKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 381
            ++V   GR L + +    K+WM  K + EL T  DP+GRAT+ DRL  + +   +MPVGRLD          +NTEG++L TND D AR +E P +++ R Y A V  N++
Sbjct:  114 DVVAVDGRVLSKTQKV--KVWMAHKMKGELVTSSDPQGRATIFDRLRVMGLTQHMMPVGRLD----------FNTEGLLLFTNDGDYARELEHPKTEVTRVYRALVRGNVA 212          
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A3M1PJ81_9PROT (Pseudouridine synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1PJ81_9PROT)

HSP 1 Score: 82.4 bits (202), Expect = 3.390e-16
Identity = 50/106 (47.17%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   55 VKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRL-AKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVY 369
            V   GR   +PE  PP+LW + K R  L TR DPEGR T+ D L A+L+    L PVGRLD           N+EG++LLTND +L RL+ELP+S + R+Y  RV+
Sbjct:   65 VTVDGRPAPQPE--PPRLWRLHKPRGVLVTRRDPEGRRTLADLLPAELR---ALKPVGRLD----------INSEGLLLLTNDGELKRLLELPASGLARSYRVRVH 155          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9J6_9PHAE7.300e-3970.09S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LDE8_ECTSI4.660e-3869.52RNA pseudouridylate synthase domain-containing pro... [more]
A0A484DRS7_BRELC4.660e-1742.34S4 domain-containing protein n=1 Tax=Bremia lactuc... [more]
G4YGT7_PHYSP4.980e-1740.54PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A2P4YDC7_9STRA6.980e-1741.44RNA pseudouridine synthase n=2 Tax=Phytophthora Ta... [more]
A0A329SE75_9STRA9.700e-1741.44S4 domain-containing protein n=2 Tax=Phytophthora ... [more]
A0A024G425_9STRA1.050e-1640.34PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A850KIC0_9HYPH1.670e-1645.79Pseudouridine synthase n=1 Tax=Methylocystaceae ba... [more]
A0A6A3MSD4_9STRA2.030e-1640.54S4 domain-containing protein n=5 Tax=Phytophthora ... [more]
A0A3M1PJ81_9PROT3.390e-1647.17Pseudouridine synthase n=1 Tax=Alphaproteobacteria... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4863contigL-elsbetiae_contig4863:8205..10164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue3.4e-11
Seed eggNOG ortholog67593.Physo143343
Hectar predicted targeting categoryother localisation
EggNOG free text desc.S4 RNA-binding domain
EggNOG OGs2QT4T@2759,3Q8IN@4776,COG1187@1
COG Functional cat.J
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size400
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4863.12776.1prot_L-elsbetiae_contig4863.12776.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4863 8205..9771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816478.9108856-CDS-L-elsbetiae_contig4863:8204..83811622816478.9108856-CDS-L-elsbetiae_contig4863:8204..8381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4863 8205..8381 -
1691683589.4346085-CDS-L-elsbetiae_contig4863:8204..83811691683589.4346085-CDS-L-elsbetiae_contig4863:8204..8381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4863 8205..8381 -
1622816478.9241838-CDS-L-elsbetiae_contig4863:9660..97711622816478.9241838-CDS-L-elsbetiae_contig4863:9660..9771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4863 9661..9771 -
1691683589.4462104-CDS-L-elsbetiae_contig4863:9660..97711691683589.4462104-CDS-L-elsbetiae_contig4863:9660..9771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4863 9661..9771 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816478.9367535-UTR-L-elsbetiae_contig4863:9771..98161622816478.9367535-UTR-L-elsbetiae_contig4863:9771..9816Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4863 9772..9816 -
1691683589.4566429-UTR-L-elsbetiae_contig4863:9771..98161691683589.4566429-UTR-L-elsbetiae_contig4863:9771..9816Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4863 9772..9816 -
1622816478.9467738-UTR-L-elsbetiae_contig4863:10098..101641622816478.9467738-UTR-L-elsbetiae_contig4863:10098..10164Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4863 10099..10164 -
1691683589.4663696-UTR-L-elsbetiae_contig4863:10098..101641691683589.4663696-UTR-L-elsbetiae_contig4863:10098..10164Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4863 10099..10164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4863.12776.1

>prot_L-elsbetiae_contig4863.12776.1 ID=prot_L-elsbetiae_contig4863.12776.1|Name=mRNA_L-elsbetiae_contig4863.12776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLL
LYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMSMTSYYE
back to top

mRNA from alignment at L-elsbetiae_contig4863:8205..10164-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4863.12776.1 ID=mRNA_L-elsbetiae_contig4863.12776.1|Name=mRNA_L-elsbetiae_contig4863.12776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1960bp|location=Sequence derived from alignment at L-elsbetiae_contig4863:8205..10164- (Laminarionema elsbetiae ELsaHSoW15)
GGTTAACGGAACACCGGTGCAAACCCCGGCGCTAAACGTGGCAGCCCGAA CATCGTCAAAGCCAAGGTCAGATCAGGCTTTGGTACCATTTCGATTTGGG CACTGTAGGGTACGGGGTGAGCCGGAACTCCGGCCAGTTGTATGCGCCCA ATTAGATTGGGTCAAGATCGATCCGCGGATCAACGAAATCAAATCAATAT GACTTTCAGTATAGGGCTCAAGCATCTGCGCCAGCCAGGCCGTTGAGCAA ATCCCGCCACTTTGTTTGATTCTGTTGTCTGTTTGCTCGTGTTTTTGACC TGTTTCTGTTTTTCGTTGGTTGTCGATGTCTATGTTGATGAACGCCAGGG GAGGGCACTGGAGCGGCCGGAGGGCCACCCGCCCAAGCTGTGGATGGTAC GCAAGACTAGGAACGAGCTATTCACGAGGCACGATCCGGAGGGGCGGGCG ACCGTGGTGGACAGGCTGGCCAAGCTCAAGATGCCCGGCACGCTCATGCC GGTGGTACGTGCACAACATGTACAAGTTGCCTAGTTCGTAAAGCGCGGGG GGGGTTGTGTATTGTGCGCGTTCACATGCTGCAGTTTAAGGTGTATATGT TGGTCAGTATAGGCCGTTTTCGAAGAATAGTCGCATACATACCCCTCTGA ACATCATGGAACCTTGCTTGGAGTTTGTGTGGGCTTTCCCAAAACGCCCG CATGATCTGACACAGTTTTGAAAGATAAACAGATATTCAAAAATGGAACC TAACCCACATAGGAGACGGACTCCCGTGAGAATTTTCAGTATTCCATATA GTGACGTCATATGCTACAAAACAGAGGCGTTCCGAGACTTTCTGCTTTAT GAGTTTGCGGAGAGGTTTTAAACCACCCCTCGCCCGATAAAATGGGAGCT CCGCTCTATTTTGCTGTGGGACCGCTCGACTATTCCACACTCCTCCAAGA CAGCAGGGCTACGTTCGCGTCTAGTCTCTTTCTTGATGGGGGCGAAAAAG GACGGTGTGGGGCTCCGGGGTGTGGCTTGAAGTATGCACCCGATTGAACA AAAAAAGACCGGTCGGAGAAATTGTTCGTGTGCACCAGAACATCGAAAGG GCGGCGCATAGCCACCTGCTGCTGCTACCCAGGACATGCGGCGGCCCCTA CACACCATATCAGTAGGCCCTTCCAGCATCTTCCGCTGTTCTTGTTTGTG AGGGGCTACGTATCTGATCTCCTAAATATCAAACTGCCAATGGAGGTGTC TGTGACAGTCCTTTCAAAACGTTCATTTTTCCATCTCGGAGAGCGAAGTT TCCGCCTCCAAAACAGCTACAACTTCAGAGCCGGAGGATTTATTTGTAAA GAACCGCAAACTGTTGCGTTGGAGTAGTTCGAGGGGTTTAGCAGCGGGGC GCTGAAGGTCAAACTGGAATGTGGTGCTTTTGTAAGGGCCCGTGCTATAT CAGTTTCAGCACACTCAAATAAATGTGCATTCATATTATCGATCAAATCG TGCTCCCAGATCCAAAGTCCAGCTGTGGGGATCTCCTCACCATTCCTTTC AGCCTGGTTTATATCTGCGCATGTAATCGTTTTACGGTGGCTTGTCGCAA ACACGCAGGAAAGAGTTGGGTTGCGAGTATTAGATTATTTAGTGCTTCAG TTCTTGAAGGCAACGTTTACCTGTCAAAGGAAATCCGGGCATGAAATCAG AGCGCCCCCCAGTGGCGGCGGCGGCAACTGACGTGCCTCTCTATTCTTTT AAAAACGCGACGATTCTCCGTTTTTTTGCATAGGGCCGATTGGACAACAA CGCAGGGCCGGTTGGACTACTGTTGTACAACACAGAGGGCGTCGTGCTGC TGACCAACGACAGAGACCTAGCCCGCCTGATCGAGCTGCCGAGCAGTGAC ATCGTCCGGACCTACTCCGCCCGCGTGTACGAAAACATGAGCATGACGTC ATACTACGAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig4863:8205..10164-

>mRNA_L-elsbetiae_contig4863.12776.1 ID=mRNA_L-elsbetiae_contig4863.12776.1|Name=mRNA_L-elsbetiae_contig4863.12776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig4863:8205..10164- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTACGCAAGACTAGGAACGAGCTATTCACGAGGCACGATCCGGAGGG
GCGGGCGACCGTGGTGGACAGGCTGGCCAAGCTCAAGATGCCCGGCACGC
TCATGCCGGTGATGGTACGCAAGACTAGGAACGAGCTATTCACGAGGCAC
GATCCGGAGGGGCGGGCGACCGTGGTGGACAGGCTGGCCAAGCTCAAGAT
GCCCGGCACGCTCATGCCGGTGGGCCGATTGGACAACAACGCAGGGCCGG
TTGGACTACTGTTGTACAACACAGAGGGCGTCGTGCTGCTGACCAACGAC
AGAGACCTAGCCCGCCTGATCGAGCTGCCGAGCAGTGACATCGTCCGGAC
CTACTCCGCCCGCGTGTACGAAAACATGAGCATGACGTCATACTACGAAG
GCCGATTGGACAACAACGCAGGGCCGGTTGGACTACTGTTGTACAACACA
GAGGGCGTCGTGCTGCTGACCAACGACAGAGACCTAGCCCGCCTGATCGA
GCTGCCGAGCAGTGACATCGTCCGGACCTACTCCGCCCGCGTGTACGAAA
ACATGAGCATGACGTCATACTACGAA
back to top