mRNA_L-elsbetiae_contig4863.12776.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE) HSP 1 Score: 141 bits (356), Expect = 7.300e-39 Identity = 75/107 (70.09%), Postives = 81/107 (75.70%), Query Frame = 1 Query: 61 AKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 381 A G+ LERPE H PKLWMV K RNEL TR DPEGR TV DRLAKLK+P TLMPVGRLD YNTEG++LLTND DLAR +ELPSS+IVRTYS RVY N S Sbjct: 197 ALGKVLERPESHTPKLWMVHKMRNELVTRDDPEGRPTVFDRLAKLKLPDTLMPVGRLD----------YNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGNGS 293
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI) HSP 1 Score: 143 bits (361), Expect = 4.660e-38 Identity = 73/105 (69.52%), Postives = 81/105 (77.14%), Query Frame = 1 Query: 67 GRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 381 G+ LERPE H PKLWMV K RNEL TRHDPEGR TV DRL KLK+P TLMPVGRLD YNTEG++LLTND DLAR +ELPSS+IVRTYS RVY N++ Sbjct: 181 GKVLERPESHTPKLWMVHKMRNELVTRHDPEGRPTVFDRLTKLKLPDTLMPVGRLD----------YNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGNIT 275
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A484DRS7_BRELC (S4 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRS7_BRELC) HSP 1 Score: 84.7 bits (208), Expect = 4.660e-17 Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = 1 Query: 49 NIVKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 381 ++V GR L P+ K+WM K + EL T DP+GRAT+ DRL + + +MPVGRLD YNTEG++LLTN+ D AR +E P + + R Y A V N++ Sbjct: 104 DVVAVDGRVL--PKTQQVKIWMAHKLKGELVTTSDPQGRATIFDRLRLMGLTQHMMPVGRLD----------YNTEGLLLLTNNGDYARELEHPKTGVTRVYRAFVRGNVT 202
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: G4YGT7_PHYSP (PseudoU_synth_2 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YGT7_PHYSP) HSP 1 Score: 83.6 bits (205), Expect = 4.980e-17 Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 1 Query: 49 NIVKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 381 ++V GR L + + K+WM K + EL T +DP+GRAT+ DRL + + +MPVGRLD +NTEG++L TND D AR +E P +++ R Y A V N++ Sbjct: 38 DVVAVDGRVLTKAQKV--KVWMAHKMKGELVTSNDPQGRATIFDRLRVMGLTQHMMPVGRLD----------FNTEGLLLFTNDGDYARELEHPKTEVTRVYRALVRGNVA 136
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A2P4YDC7_9STRA (RNA pseudouridine synthase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4YDC7_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 6.980e-17 Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 1 Query: 49 NIVKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 381 ++V GR L R + K+WM K + EL T DP+GRAT+ DRL + + +MPVGRLD +NTEG++L TND D AR +E P + + R Y A V N++ Sbjct: 38 DVVSVDGRVLTRTQKV--KVWMAHKIKGELVTNSDPQGRATIFDRLRVMGLTQHMMPVGRLD----------FNTEGLLLFTNDGDYAREMEHPKTGVTRVYRALVRGNVA 136
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A329SE75_9STRA (S4 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SE75_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 9.700e-17 Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1 Query: 49 NIVKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 381 ++V+ GR L + + K+WM K + EL T DP+GRAT+ DRL + + +MPVGRLD +NTEG++L TND D AR +E P ++I R Y A V N++ Sbjct: 107 DVVEVDGRVLSKAQKI--KIWMAHKMKGELVTSSDPQGRATIFDRLRVMGLAQHMMPVGRLD----------FNTEGLLLFTNDGDYARELEHPKTEISRVYRALVRGNVA 205
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A024G425_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G425_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.050e-16 Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1 Query: 22 NPGAKRGSPNIVKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENM 378 NP R + N + R E P K+W+ K + EL T DP+GR+T+ DR ++ + LMPVGRLD YNTEG+++LTND + AR +E P S + RTY A V N+ Sbjct: 34 NPQVDRVTVNGIDLMLRKQEANAPSPIKVWLAHKLKGELVTTEDPQGRSTIFDRFRQMGLKQHLMPVGRLD----------YNTEGLLILTNDGEYARQLEHPKSCVQRTYRAFVRGNV 142
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A850KIC0_9HYPH (Pseudouridine synthase n=1 Tax=Methylocystaceae bacterium TaxID=2052174 RepID=A0A850KIC0_9HYPH) HSP 1 Score: 83.2 bits (204), Expect = 1.670e-16 Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 49 NIVKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVY 369 NIV G+AL P+ PP++W K R + T DPEGR TV D+L K MP ++ VGRLD +NTEG++LLTND +LAR +E P++ +VR Y RV+ Sbjct: 55 NIVVVDGKAL--PDKQPPRMWKFHKARGLITTNSDPEGRPTVFDQLPK-NMP-RMISVGRLD----------FNTEGLLLLTNDGELARYLEKPANAMVRRYRVRVH 147
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A6A3MSD4_9STRA (S4 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MSD4_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 2.030e-16 Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = 1 Query: 49 NIVKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVYENMS 381 ++V GR L + + K+WM K + EL T DP+GRAT+ DRL + + +MPVGRLD +NTEG++L TND D AR +E P +++ R Y A V N++ Sbjct: 114 DVVAVDGRVLSKTQKV--KVWMAHKMKGELVTSSDPQGRATIFDRLRVMGLTQHMMPVGRLD----------FNTEGLLLFTNDGDYARELEHPKTEVTRVYRALVRGNVA 212
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Match: A0A3M1PJ81_9PROT (Pseudouridine synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1PJ81_9PROT) HSP 1 Score: 82.4 bits (202), Expect = 3.390e-16 Identity = 50/106 (47.17%), Postives = 65/106 (61.32%), Query Frame = 1 Query: 55 VKAKGRALERPEGHPPKLWMVRKTRNELFTRHDPEGRATVVDRL-AKLKMPGTLMPVGRLDNNAGPVGLLLYNTEGVVLLTNDRDLARLIELPSSDIVRTYSARVY 369 V GR +PE PP+LW + K R L TR DPEGR T+ D L A+L+ L PVGRLD N+EG++LLTND +L RL+ELP+S + R+Y RV+ Sbjct: 65 VTVDGRPAPQPE--PPRLWRLHKPRGVLVTRRDPEGRRTLADLLPAELR---ALKPVGRLD----------INSEGLLLLTNDGELKRLLELPASGLARSYRVRVH 155 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4863.12776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4863.12776.1 >prot_L-elsbetiae_contig4863.12776.1 ID=prot_L-elsbetiae_contig4863.12776.1|Name=mRNA_L-elsbetiae_contig4863.12776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp MVRKTRNELFTRHDPEGRATVVDRLAKLKMPGTLMPVGRLDNNAGPVGLLback to top mRNA from alignment at L-elsbetiae_contig4863:8205..10164- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig4863.12776.1 ID=mRNA_L-elsbetiae_contig4863.12776.1|Name=mRNA_L-elsbetiae_contig4863.12776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1960bp|location=Sequence derived from alignment at L-elsbetiae_contig4863:8205..10164- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig4863:8205..10164- >mRNA_L-elsbetiae_contig4863.12776.1 ID=mRNA_L-elsbetiae_contig4863.12776.1|Name=mRNA_L-elsbetiae_contig4863.12776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig4863:8205..10164- (Laminarionema elsbetiae ELsaHSoW15)back to top |