prot_L-elsbetiae_contig483.12724.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig483.12724.1
Unique Nameprot_L-elsbetiae_contig483.12724.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length237
Homology
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BLAST of mRNA_L-elsbetiae_contig483.12724.1 vs. uniprot
Match: A0A6H5L3X4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3X4_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 9.620e-66
Identity = 117/172 (68.02%), Postives = 128/172 (74.42%), Query Frame = 0 
Query:    1 MRRTRDPSVFRVVVVVIFTAAAILIPGADGESCSEQHSCDACRNTTLCHWCPDQQCHAVGSLKGCVYGTYCYDNNQCQRELPEFRGYAPPSIGVILGVFLVGSTALFCGIAGISIAREYSKESAAARRRDALREAAATTTAVSAARWPAGLRAAEPSGDGNEGGYMTLAGDD 172
            MR  R  SV  V + ++  AAAIL+PGA   SCS   SC ACRNTTLCHWCPDQQCH +GS  GC YGTYCY+NNQCQRELPEF+GY  PSI V+LGVFLVGST LFCGIAGISIAREY+KESAA RR++ALR      T  S  R    L AAEPSGDG   GYMTLAGDD
Sbjct:    1 MRLIRGRSVLPVTMSLVLAAAAILLPGAGATSCSVLDSCGACRNTTLCHWCPDQQCHVIGSFHGCAYGTYCYNNNQCQRELPEFKGYEAPSIAVLLGVFLVGSTTLFCGIAGISIAREYAKESAATRRQNALR-----VTTFSPDR-SVRLTAAEPSGDG---GYMTLAGDD 163
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BLAST of mRNA_L-elsbetiae_contig483.12724.1 vs. uniprot
Match: A0A662XE87_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XE87_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 8.060e-10
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 0 
Query:   28 ADGESCSEQHSCDACRNTTL-CHWCP-DQQCHAVGSLKGCVYG-TYCYDNNQCQRELPEFRGYAPPSIGVILGVFLVGS-TALFCGIAGI 113
            A  ++C+   +CD+C N +  CH+C  D QCHA+GS+ GC+ G + C+    C+R  P++ GY PP   VI  + LV + T   CGI+ I
Sbjct:   29 ATWDACAAHKTCDSCLNASYACHFCASDFQCHAIGSVHGCITGISTCHHLQDCERADPQYVGYGPPPSVVIAVLCLVVTLTCCICGISSI 118
[Close]
BLAST of mRNA_L-elsbetiae_contig483.12724.1 vs. uniprot
Match: A0A7S4JFU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JFU8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.230e-7
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 0 
Query:   26 PGADGESCSEQHSCDACR-NTTLCHWCP-DQQCHAVGSLKGCVYGTYCYDNNQCQRELPE-FRGYAPPSIGVILGVFLVGS-TALFC 108
            P  +  SC+ Q +C  C  ++ +C+WC  D QCHA GS+ GC+    CY N++C R+ PE  +      IG++  + +VG+  AL C
Sbjct:  243 PKKNDTSCAAQKTCSECSLSSFMCNWCAYDNQCHAKGSVHGCLSSVNCYSNSRCTRKGPEPIKRNVFGQIGMLPALAIVGAGMALLC 329
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig483.12724.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L3X4_9PHAE9.620e-6668.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A662XE87_9STRA8.060e-1040.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S4JFU8_9STRA3.230e-736.78Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 9..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..113
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..8
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..91
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 114..237
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..30
score: 0.806
NoneNo IPR availableTMHMMTMhelixcoord: 9..28
NoneNo IPR availableTMHMMTMhelixcoord: 94..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig483contigL-elsbetiae_contig483:1695..4586 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig483.12724.1mRNA_L-elsbetiae_contig483.12724.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig483 1695..4834 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig483.12724.1 ID=prot_L-elsbetiae_contig483.12724.1|Name=mRNA_L-elsbetiae_contig483.12724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=237bp
MRRTRDPSVFRVVVVVIFTAAAILIPGADGESCSEQHSCDACRNTTLCHW
CPDQQCHAVGSLKGCVYGTYCYDNNQCQRELPEFRGYAPPSIGVILGVFL
VGSTALFCGIAGISIAREYSKESAAARRRDALREAAATTTAVSAARWPAG
LRAAEPSGDGNEGGYMTLAGDDTDDEPGGGAAAAPLMGGSINASSADEEE
DGGAIRKGKRDYGRGGPRRVGGGGGGSARRRRRRRRA
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