mRNA_L-elsbetiae_contig483.12724.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig483.12724.1
Unique NamemRNA_L-elsbetiae_contig483.12724.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig483.12724.1 vs. uniprot
Match: A0A6H5L3X4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3X4_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 8.180e-65
Identity = 117/172 (68.02%), Postives = 128/172 (74.42%), Query Frame = 3 
Query:  249 MRRTRDPSVFRVVVVVIFTAAAILIPGADGESCSEQHSCDACRNTTLCHWCPDQQCHAVGSLKGCVYGTYCYDNNQCQRELPEFRGYAPPSIGVILGVFLVGSTALFCGIAGISIAREYSKESAAARRRDALREAAATTTAVSAARWPAGLRAAEPSGDGNEGGYMTLAGDD 764
            MR  R  SV  V + ++  AAAIL+PGA   SCS   SC ACRNTTLCHWCPDQQCH +GS  GC YGTYCY+NNQCQRELPEF+GY  PSI V+LGVFLVGST LFCGIAGISIAREY+KESAA RR++ALR      T  S  R    L AAEPSGDG   GYMTLAGDD
Sbjct:    1 MRLIRGRSVLPVTMSLVLAAAAILLPGAGATSCSVLDSCGACRNTTLCHWCPDQQCHVIGSFHGCAYGTYCYNNNQCQRELPEFKGYEAPSIAVLLGVFLVGSTTLFCGIAGISIAREYAKESAATRRQNALR-----VTTFSPDR-SVRLTAAEPSGDG---GYMTLAGDD 163
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BLAST of mRNA_L-elsbetiae_contig483.12724.1 vs. uniprot
Match: A0A662XE87_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XE87_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.600e-9
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 3 
Query:  330 ADGESCSEQHSCDACRNTTL-CHWCP-DQQCHAVGSLKGCVYG-TYCYDNNQCQRELPEFRGYAPPSIGVILGVFLVGS-TALFCGIAGI 587
            A  ++C+   +CD+C N +  CH+C  D QCHA+GS+ GC+ G + C+    C+R  P++ GY PP   VI  + LV + T   CGI+ I
Sbjct:   29 ATWDACAAHKTCDSCLNASYACHFCASDFQCHAIGSVHGCITGISTCHHLQDCERADPQYVGYGPPPSVVIAVLCLVVTLTCCICGISSI 118
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BLAST of mRNA_L-elsbetiae_contig483.12724.1 vs. uniprot
Match: A0A7S4JFU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JFU8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.900e-7
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 3 
Query:  324 PGADGESCSEQHSCDACR-NTTLCHWCP-DQQCHAVGSLKGCVYGTYCYDNNQCQRELPE-FRGYAPPSIGVILGVFLVGS-TALFC 572
            P  +  SC+ Q +C  C  ++ +C+WC  D QCHA GS+ GC+    CY N++C R+ PE  +      IG++  + +VG+  AL C
Sbjct:  243 PKKNDTSCAAQKTCSECSLSSFMCNWCAYDNQCHAKGSVHGCLSSVNCYSNSRCTRKGPEPIKRNVFGQIGMLPALAIVGAGMALLC 329
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig483.12724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L3X4_9PHAE8.180e-6568.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A662XE87_9STRA2.600e-940.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S4JFU8_9STRA9.900e-736.78Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig483contigL-elsbetiae_contig483:1695..4834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.0
Seed ortholog evalue4.7e-54
Seed eggNOG ortholog2880.D8LSA4
Hectar predicted targeting categorysignal peptide
EggNOG OGs28NN6@1,2QV7X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_004250.1
Exons3
Model size961
Cds size711
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig483.12724.1prot_L-elsbetiae_contig483.12724.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig483 1695..4586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816474.15704-CDS-L-elsbetiae_contig483:1694..21771622816474.15704-CDS-L-elsbetiae_contig483:1694..2177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig483 1695..2177 -
1691683586.022579-CDS-L-elsbetiae_contig483:1694..21771691683586.022579-CDS-L-elsbetiae_contig483:1694..2177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig483 1695..2177 -
1622816474.1709864-CDS-L-elsbetiae_contig483:3138..31751622816474.1709864-CDS-L-elsbetiae_contig483:3138..3175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig483 3139..3175 -
1691683586.0395105-CDS-L-elsbetiae_contig483:3138..31751691683586.0395105-CDS-L-elsbetiae_contig483:3138..3175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig483 3139..3175 -
1622816474.186246-CDS-L-elsbetiae_contig483:4395..45861622816474.186246-CDS-L-elsbetiae_contig483:4395..4586Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig483 4396..4586 -
1691683586.0495734-CDS-L-elsbetiae_contig483:4395..45861691683586.0495734-CDS-L-elsbetiae_contig483:4395..4586Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig483 4396..4586 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816474.196184-UTR-L-elsbetiae_contig483:4586..48341622816474.196184-UTR-L-elsbetiae_contig483:4586..4834Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig483 4587..4834 -
1691683586.059722-UTR-L-elsbetiae_contig483:4586..48341691683586.059722-UTR-L-elsbetiae_contig483:4586..4834Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig483 4587..4834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig483.12724.1

>prot_L-elsbetiae_contig483.12724.1 ID=prot_L-elsbetiae_contig483.12724.1|Name=mRNA_L-elsbetiae_contig483.12724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=237bp
MRRTRDPSVFRVVVVVIFTAAAILIPGADGESCSEQHSCDACRNTTLCHW
CPDQQCHAVGSLKGCVYGTYCYDNNQCQRELPEFRGYAPPSIGVILGVFL
VGSTALFCGIAGISIAREYSKESAAARRRDALREAAATTTAVSAARWPAG
LRAAEPSGDGNEGGYMTLAGDDTDDEPGGGAAAAPLMGGSINASSADEEE
DGGAIRKGKRDYGRGGPRRVGGGGGGSARRRRRRRRA
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mRNA from alignment at L-elsbetiae_contig483:1695..4834-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig483.12724.1 ID=mRNA_L-elsbetiae_contig483.12724.1|Name=mRNA_L-elsbetiae_contig483.12724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3140bp|location=Sequence derived from alignment at L-elsbetiae_contig483:1695..4834- (Laminarionema elsbetiae ELsaHSoW15)
GCTCATCACCCCCGTCATACCTGGAGGTCGCCGCTCTTGGCAGAAGGGTG
CTTGTGGACGTTTGGACTGGTGTCAGTCTCGACTGAAGGGATCTCCTCTC
TCGTTTTCCTTTTCTACCTCAAAACGAGCAAGGTTGAAGTCTCGTATCGC
ACCGCATCCCTCTGGAGAGCTTTCAGCTTTACACGTGCTGCCTTCGGCAA
AACAAACACCTTCTCTCCCGTACACGCGATCGAGCTGAGGTGCATACAAT
GAGGAGAACTCGTGATCCGTCTGTTTTTCGGGTGGTAGTTGTAGTTATCT
TCACGGCCGCGGCGATTCTGATACCCGGGGCGGACGGAGAGAGCTGCAGC
GAGCAACATTCGTGCGACGCTTGCCGAAACACGACTTTGTGTCACTGGTG
TCCCGACCAGCAGTGCCATGCCGTGGGCAGCCTGAAAGGGTGAGTAATGG
AGGGTTTTTTATATATTCGTTCGTACGGTTTGAGCCCGTGTTGATGTTAC
ATAATTTCGCATCGAGCTATAGTAGTGAAATCTCGGGGTTAGCAGTTAGC
ACATACTAGACGACACAGGAAACAACCCCCCCCCCCTGGTGATATATTTT
AGGCGCGTGAAAATATTGACACCCGGGGGGGTGGTTTTCTGTGGGGGGGA
GTGGTATCTACTATCCCCCGGTGATAAAGTGTAGGTCGTGGGGGGCGCCG
ATCAAAGGGGGGTCATCATGAGGGGGTTACGACAAAGCGGGGTGAGACAG
ATACATGTACCACCCCTACGATGATGCTGCCCGCATCTGCAAGGGGTGTT
CCATCACGGGGGGTTGTCTCAATCACGGTTCACTGCATGCTTCACATAAA
ACCCGGGCGTGTGTATATGTATGTACACCATCAACCCCTCGTTAAAAAGA
AAGGTACCGTCAACACCTGGTGTGGCACCAAGAGATAAGATTCTCGACAC
AGGCATGAAGGCTAAATAAACCCGTCTGCGTTCCCCGCTGGATTTCCGTT
GATTGTCAATCTCTTACCCGCCGGCGCGCTTTCGAGCGAGTGCAAAAGGC
ATAATAAAAAAAAATACGAAGTACATAAGAAGAGCCGTTTTCACGCAACA
AGCTAGTCGCCGACAGGACCCCATGAAGACTGCCCTCTGCCTACCTACCG
GTACTCAGCGAGGACAAAGCTGAAAAGCATGCCCCGTGGTTCATGCGGTG
TAACCTCAGGGGGGGGTTGATATATTCGGTACCCTAAATGTAGTGATAAA
TGGGCCTACTATTATGGGCTTGGAAATATCATCACCGGGGGTGTTTTCTG
TGGGGCGGGAGGTGGTATCTTCGGTACCCGTGTTATCTTGTGTCATCCAC
GATAGGGGGGGTATGGTACATACTAAAAGTCTGGTGGTCTTCCGACACAA
GATACTACAGTCAGCGGCACCCACATAGCAGCACCTAACCGCGCACTCCC
ACCCCCGCGGGAAGAAGCTGAGCACAAGCGGGTATTTGCCGTGTGACGAT
TATGTTGTACGTGTGTACATGGTATATTTGCATCTTGATTCAAAACGCGC
ATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGCTAATTTAC
AGGTTTGATTTATTAATCTATTTGCGCTTGTTTCGCCGTTCGCCGTCCAC
CGATCGCAGCTGCGTCTACGGGACATACTGCTATGACAACAACCAGGTAC
GAAACGGTATTCGGACATTGTACGTGCAGGCACGAAGATGCCGAACATAA
AGTAGGGTTTTGTGTCATCGAGACCACAGAGTACCTAGTTGTTGCTGTTG
TTTATTTGCATTAGCTCGTATAATCGAGATTGCTATTTCCAAAAATCTAG
CAACTCACGGGCTGTGGTCACAAAAATGCTGGAGCCATCAGAAGATCCGA
AAAGGACACGCGCAGATACACCGGGCAAGGGTACACAAGGCCGAGGAGGT
ACACCTATGAATATGCTGGTGAAGAAAAACACATATCCTACTGAGCCACG
CCATGTAGGCCTTGTTTTTGTCCCTCTTCTCGAGGTCTCCCTCTATGCAG
TCTCACTTCGGCGGTGATCGTCTCCTATACATGTACACCAGAACACAGCA
AATTCGATTACTTGAGCCAGGCCCCACCGGGTGTTAGCTGCAGCTACTCG
CATTCTGTATCTCGAGAAACGCTGTTCATGCATGGTACACATGCATGGTA
CACATGCACAATCCGCACTGAAGTATGTGCAATAGCCTTCGCTTGAAAGC
GAAAGCGGGAAGACAAACGTCAACCAACTGCACCAAGGGATGCCTGTGCC
CTTCGACGATACCGTCCCAAAAGTCTTGCCCGGGGAGGGGGTGAGGGTGA
CTCTGTGGTGCGGACTTTCTCGTGTGTTACAAGTTCCAGCCTGTCAGCCA
CATCCCCAAGAAGCTACTGCTATTCATATGTACAAGCGCATGCCCTGGTC
GGTAGTCTATATGTTCTGTTGCTGACGACGTCGTGCACCCAGAGGGTGCG
AAGCGACCCACATTCCCAACACCACGAATCCAGCGCAAAAGAGGCGCTTA
CGGTCAGCCAGCGGTTATGGTCAGCGCCTTCGGTAAACCACCCTGCTCCG
CCCCGATGCCGCCCTGATACCCCACAAACCATGCCCTCCCCCCCCGTTCA
CGAGCAGTGCCAGCGCGAACTGCCCGAATTCCGAGGCTACGCCCCCCCAT
CGATCGGTGTAATCCTCGGGGTCTTTCTCGTGGGCAGCACCGCGCTGTTC
TGCGGGATCGCGGGTATTTCCATTGCCCGCGAGTACTCCAAGGAGTCGGC
CGCCGCTCGCCGGCGGGACGCGCTGAGGGAGGCGGCGGCGACGACGACGG
CAGTCTCCGCCGCCCGCTGGCCGGCCGGGCTGCGCGCTGCCGAGCCCTCA
GGCGACGGCAACGAGGGCGGCTACATGACGCTCGCCGGCGACGACACCGA
TGACGAGCCCGGCGGCGGCGCCGCCGCCGCCCCCCTGATGGGCGGCAGCA
TCAACGCCTCCTCCGCCGACGAGGAGGAGGACGGCGGAGCCATCCGGAAG
GGGAAGAGGGACTACGGCAGGGGCGGGCCGAGGAGGGTGGGCGGCGGTGG
CGGCGGCAGTGCGCGCCGCCGACGCCGCCGTCGCCGGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig483:1695..4834-

>mRNA_L-elsbetiae_contig483.12724.1 ID=mRNA_L-elsbetiae_contig483.12724.1|Name=mRNA_L-elsbetiae_contig483.12724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1422bp|location=Sequence derived from alignment at L-elsbetiae_contig483:1695..4834- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGAGAACTCGTGATCCGTCTGTTTTTCGGGTGGTAGTTGTAGTTAT
CTTCACGGCCGCGGCGATTCTGATACCCGGGGCGGACGGAGAGAGCTGCA
GCGAGCAACATTCGTGCGACGCTTGCCGAAACACGACTTTGTGTCACTGG
TGTCCCGACCAGCAGTGCCATGCCGTGGGCAGCCTGAAAGGATGAGGAGA
ACTCGTGATCCGTCTGTTTTTCGGGTGGTAGTTGTAGTTATCTTCACGGC
CGCGGCGATTCTGATACCCGGGGCGGACGGAGAGAGCTGCAGCGAGCAAC
ATTCGTGCGACGCTTGCCGAAACACGACTTTGTGTCACTGGTGTCCCGAC
CAGCAGTGCCATGCCGTGGGCAGCCTGAAAGGCTGCGTCTACGGGACATA
CTGCTATGACAACAACCAGCTGCGTCTACGGGACATACTGCTATGACAAC
AACCAGTGCCAGCGCGAACTGCCCGAATTCCGAGGCTACGCCCCCCCATC
GATCGGTGTAATCCTCGGGGTCTTTCTCGTGGGCAGCACCGCGCTGTTCT
GCGGGATCGCGGGTATTTCCATTGCCCGCGAGTACTCCAAGGAGTCGGCC
GCCGCTCGCCGGCGGGACGCGCTGAGGGAGGCGGCGGCGACGACGACGGC
AGTCTCCGCCGCCCGCTGGCCGGCCGGGCTGCGCGCTGCCGAGCCCTCAG
GCGACGGCAACGAGGGCGGCTACATGACGCTCGCCGGCGACGACACCGAT
GACGAGCCCGGCGGCGGCGCCGCCGCCGCCCCCCTGATGGGCGGCAGCAT
CAACGCCTCCTCCGCCGACGAGGAGGAGGACGGCGGAGCCATCCGGAAGG
GGAAGAGGGACTACGGCAGGGGCGGGCCGAGGAGGGTGGGCGGCGGTGGC
GGCGGCAGTGCGCGCCGCCGACGCCGCCGTCGCCGGGCGTGCCAGCGCGA
ACTGCCCGAATTCCGAGGCTACGCCCCCCCATCGATCGGTGTAATCCTCG
GGGTCTTTCTCGTGGGCAGCACCGCGCTGTTCTGCGGGATCGCGGGTATT
TCCATTGCCCGCGAGTACTCCAAGGAGTCGGCCGCCGCTCGCCGGCGGGA
CGCGCTGAGGGAGGCGGCGGCGACGACGACGGCAGTCTCCGCCGCCCGCT
GGCCGGCCGGGCTGCGCGCTGCCGAGCCCTCAGGCGACGGCAACGAGGGC
GGCTACATGACGCTCGCCGGCGACGACACCGATGACGAGCCCGGCGGCGG
CGCCGCCGCCGCCCCCCTGATGGGCGGCAGCATCAACGCCTCCTCCGCCG
ACGAGGAGGAGGACGGCGGAGCCATCCGGAAGGGGAAGAGGGACTACGGC
AGGGGCGGGCCGAGGAGGGTGGGCGGCGGTGGCGGCGGCAGTGCGCGCCG
CCGACGCCGCCGTCGCCGGGCG
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