prot_L-elsbetiae_contig4824.12713.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig4824.12713.1
Unique Nameprot_L-elsbetiae_contig4824.12713.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length176
Homology
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BLAST of mRNA_L-elsbetiae_contig4824.12713.1 vs. uniprot
Match: A0A6H5K1H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.860e-13
Identity = 70/148 (47.30%), Postives = 88/148 (59.46%), Query Frame = 0 
Query:    5 GHH----QHLFAAFAPPPSLYQHPHIQEQGMPR-AGMPGVGRRVSSGDVDTDRDQPAAVS--SQEFQD-ASSARGXXXXXXXXXXXXXHSPVAPDDGGRNPSWDHGPPKXXXXXXXXXXXXXXXXXXRTLSPMLVSHDARSLDGTNAQ 144
            GHH    QHLFA FAPPPSL+QHPH+Q QG+P  A +   GR V+S  V+++R++ A ++  SQ F D ASS R                 VAP++GG   SW             XXXXXXXXXXXR+LSPM VSHD+ ++DG N Q
Sbjct: 2877 GHHHPQQQHLFAGFAPPPSLFQHPHMQ-QGLPHVAALAAAGRHVNS--VESEREKSAVIAAVSQGFPDKASSGRAGDGGGPEQHL------VAPEEGGGELSW------------AXXXXXXXXXXXRSLSPMHVSHDSGAMDGVNPQ 3003
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4824.12713.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1H2_9PHAE4.860e-1347.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4824contigL-elsbetiae_contig4824:373..2484 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4824.12713.1mRNA_L-elsbetiae_contig4824.12713.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig4824 373..2486 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig4824.12713.1 ID=prot_L-elsbetiae_contig4824.12713.1|Name=mRNA_L-elsbetiae_contig4824.12713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
GYGVGHHQHLFAAFAPPPSLYQHPHIQEQGMPRAGMPGVGRRVSSGDVDT
DRDQPAAVSSQEFQDASSARGGADGGQQQQQQQQHSPVAPDDGGRNPSWD
HGPPKHAPPKQHQHHQHQQHHHQRTLSPMLVSHDARSLDGTNAQLSSEMA
GHGQGHSSSSSGSGNAYPTPSHLHPH
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