mRNA_L-elsbetiae_contig4824.12713.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4824.12713.1
Unique NamemRNA_L-elsbetiae_contig4824.12713.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4824.12713.1 vs. uniprot
Match: A0A6H5K1H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.860e-13
Identity = 70/148 (47.30%), Postives = 88/148 (59.46%), Query Frame = 1 
Query:   13 GHH----QHLFAAFAPPPSLYQHPHIQEQGMPR-AGMPGVGRRVSSGDVDTDRDQPAAVS--SQEFQD-ASSARGXXXXXXXXXXXXXHSPVAPDDGGRNPSWDHGPPKXXXXXXXXXXXXXXXXXXRTLSPMLVSHDARSLDGTNAQ 432
            GHH    QHLFA FAPPPSL+QHPH+Q QG+P  A +   GR V+S  V+++R++ A ++  SQ F D ASS R                 VAP++GG   SW             XXXXXXXXXXXR+LSPM VSHD+ ++DG N Q
Sbjct: 2877 GHHHPQQQHLFAGFAPPPSLFQHPHMQ-QGLPHVAALAAAGRHVNS--VESEREKSAVIAAVSQGFPDKASSGRAGDGGGPEQHL------VAPEEGGGELSW------------AXXXXXXXXXXXRSLSPMHVSHDSGAMDGVNPQ 3003
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4824.12713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1H2_9PHAE4.860e-1347.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4824contigL-elsbetiae_contig4824:373..2486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size532
Cds size528
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4824.12713.1prot_L-elsbetiae_contig4824.12713.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4824 373..2484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816473.2899861-CDS-L-elsbetiae_contig4824:372..4531622816473.2899861-CDS-L-elsbetiae_contig4824:372..453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4824 373..453 +
1691683585.4138892-CDS-L-elsbetiae_contig4824:372..4531691683585.4138892-CDS-L-elsbetiae_contig4824:372..453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4824 373..453 +
1622816473.3022945-CDS-L-elsbetiae_contig4824:913..12641622816473.3022945-CDS-L-elsbetiae_contig4824:913..1264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4824 914..1264 +
1691683585.4240582-CDS-L-elsbetiae_contig4824:913..12641691683585.4240582-CDS-L-elsbetiae_contig4824:913..1264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4824 914..1264 +
1622816473.313937-CDS-L-elsbetiae_contig4824:2388..24841622816473.313937-CDS-L-elsbetiae_contig4824:2388..2484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4824 2389..2484 +
1691683585.4329073-CDS-L-elsbetiae_contig4824:2388..24841691683585.4329073-CDS-L-elsbetiae_contig4824:2388..2484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4824 2389..2484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4824.12713.1

>prot_L-elsbetiae_contig4824.12713.1 ID=prot_L-elsbetiae_contig4824.12713.1|Name=mRNA_L-elsbetiae_contig4824.12713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
GYGVGHHQHLFAAFAPPPSLYQHPHIQEQGMPRAGMPGVGRRVSSGDVDT
DRDQPAAVSSQEFQDASSARGGADGGQQQQQQQQHSPVAPDDGGRNPSWD
HGPPKHAPPKQHQHHQHQQHHHQRTLSPMLVSHDARSLDGTNAQLSSEMA
GHGQGHSSSSSGSGNAYPTPSHLHPH
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mRNA from alignment at L-elsbetiae_contig4824:373..2486+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4824.12713.1 ID=mRNA_L-elsbetiae_contig4824.12713.1|Name=mRNA_L-elsbetiae_contig4824.12713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2114bp|location=Sequence derived from alignment at L-elsbetiae_contig4824:373..2486+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTACGGGGTGGGGCACCACCAGCACCTCTTCGCCGCGTTCGCGCCCCC
CCCGTCCTTGTACCAGCACCCTCACATCCAGGTGAAAACGACGTGGCGTG
ACTGTTACGTAGCAGGTGTCTGTTGGTATGTATTCTACATGACCTTGCCG
GGTGCCTGCGGCGGTAACTTGGGGCAGTTTTTTTTTTATTGATTTGTAAT
CCTTGCCCAACACGGGGTGTCCGTCGTGATTAACCGCCGGGCTTTTTTTT
GTCTGCCGCCTTTGGCGCCGTTTCAGAAGTGTTGATTAAAAGGAGTCTAA
AAGGGCTACAATGTTTGAAGCTGAAGGTTTGCGTGTTTCCCGGGCCCCCC
CCCCCCCCCAAACAAGCACACACCCCGGTTTCTTCGGCAACCTTCAGGAG
ACGGGGATGCCCCGCGCGGGGGGGGCCGGGGNNNNNNNNNNAAAAGGGTT
TCAATTTTTTAAGTTGAGGGTTTGCGTTTTCCCCCCCCCCCCCCCCCCCC
CCAATCAATGCACACACGCTGATTTCTTCGTCATCTTTAAGGAGCAGGGG
ATGCCGCGCGCGGGGATGCCCGGGGTCGGCCGGCGCGTGAGCAGCGGGGA
CGTGGACACCGATCGAGACCAGCCCGCCGCCGTCAGCAGCCAGGAGTTCC
AGGACGCTTCTTCTGCTCGCGGCGGGGCAGACGGGGGGCAGCAGCAGCAG
CAGCAGCAGCAGCACTCACCTGTAGCGCCCGATGACGGTGGGAGGAACCC
GTCGTGGGACCACGGGCCCCCCAAGCACGCGCCCCCCAAGCAACACCAGC
ATCACCAGCACCAGCAGCATCATCACCAGCGAACGTTGTCCCCGATGCTA
GTTTCGCATGACGCCCGATCCTTGGATGGCACCAATGCGCAGGTAATTAA
TACGGGTACATACACGCCGTGCTTTTTTTTTTTTTTTTATCGGCCCCCCC
GAGTAGCCTGTTGTAGGGTGAAAAAATCGNNNNNNNNNNCCCCCCCCCCC
CACAGCACCCCCGCGCCCCCAATAACAAGGGGTACCACCCCGCCGTGCTT
TTTTTTTTTTTTTTTATCGGCCCCCCCGAGTAGCCTGTTGTAGGTTGAAA
AAATCGGCCGAAGGGAAGGAGAAGAAGCATGCCATATATGACACAAGATA
ACACACCCCCTGGACCGGTTTTTAAAGCTCGGTTATTCCGCAACGAGTAT
GGTTCTGGTACCGAACTACGACACGTTTTCGGACAGCTCTTGATGAGATC
TTTCCAACGCCCGCCCTTTTCGGGACCGACATTCTTCTCGCTGTGGAGCA
CTTGAGCCTTGAAAATCGGTCGTCCAGGGGGTGTGTTACCCGTGTACGAT
GTAGATTTGTGCGTGCGGCTAAGTCGGACACGGTGAACGCGCTGTGGGTT
TCTAACTCTGCGCACGTTCTCGGTCCCCTTAATGTCCTCAACCCCCCCCC
CCTTGTGACCAACCAAGACAAGAGCGACAACCCTATAGGTATAATTTAGA
GATAAATAAAAAATAGAGGGAGGCATACACAGGTAGTATCAAGCGCTCAC
AGCAGTCCCGTCTTAAACTGCTGTTTGCAATAAATGTGGTGTACACATTT
GGTGGTGCAGGCGTGCAAGCGCTTCACTTCAACCCCCGCTGGTGTTATCT
TCCTGAATTTTTCCTGTCGGGTCTTTGTGCTGAATGCCTGGGGTCTGACC
TGGTATGCATGCACAATTTTTTGCATAAATGGGATTCTTCTTGGGCATAC
ATACGAAAAGGCTGAGTCATGCTCGAAAGAATGGCCATTTATGCTCGACT
TATGCACGGATTAGCCTTAAACGCGACGGTTATGCTCGTTTCTTTGTGTG
CATAAATAACGAAAGTATATGCCTCAACAGGCAACAAAGCTTAAAAAAAT
AAAATAAAGTTATCAAGTCAGGCCCTACTGAAATGCGTACAATACTACTG
TACCGCCACCAAGTGACAATGGAAACCCCACCCGTCCATCCGTCTACCCT
ATACCTCATGTTGCAGCTCTCGTCGGAGATGGCGGGACACGGGCAGGGCC
ACAGCAGCAGCAGCAGTGGCAGTGGCAATGCGTACCCAACTCCGAGCCAC
CTGCACCCACACCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4824:373..2486+

>mRNA_L-elsbetiae_contig4824.12713.1 ID=mRNA_L-elsbetiae_contig4824.12713.1|Name=mRNA_L-elsbetiae_contig4824.12713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig4824:373..2486+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTACGGGGTGGGGCACCACCAGCACCTCTTCGCCGCGTTCGCGCCCCC
CCCGTCCTTGTACCAGCACCCTCACATCCAGGGGTACGGGGTGGGGCACC
ACCAGCACCTCTTCGCCGCGTTCGCGCCCCCCCCGTCCTTGTACCAGCAC
CCTCACATCCAGGAGCAGGGGATGCCGCGCGCGGGGATGCCCGGGGTCGG
CCGGCGCGTGAGCAGCGGGGACGTGGACACCGATCGAGACCAGCCCGCCG
CCGTCAGCAGCCAGGAGTTCCAGGACGCTTCTTCTGCTCGCGGCGGGGCA
GACGGGGGGCAGCAGCAGCAGCAGCAGCAGCAGCACTCACCTGTAGCGCC
CGATGACGGTGGGAGGAACCCGTCGTGGGACCACGGGCCCCCCAAGCACG
CGCCCCCCAAGCAACACCAGCATCACCAGCACCAGCAGCATCATCACCAG
CGAACGTTGTCCCCGATGCTAGTTTCGCATGACGCCCGATCCTTGGATGG
CACCAATGCGCAGGAGCAGGGGATGCCGCGCGCGGGGATGCCCGGGGTCG
GCCGGCGCGTGAGCAGCGGGGACGTGGACACCGATCGAGACCAGCCCGCC
GCCGTCAGCAGCCAGGAGTTCCAGGACGCTTCTTCTGCTCGCGGCGGGGC
AGACGGGGGGCAGCAGCAGCAGCAGCAGCAGCAGCACTCACCTGTAGCGC
CCGATGACGGTGGGAGGAACCCGTCGTGGGACCACGGGCCCCCCAAGCAC
GCGCCCCCCAAGCAACACCAGCATCACCAGCACCAGCAGCATCATCACCA
GCGAACGTTGTCCCCGATGCTAGTTTCGCATGACGCCCGATCCTTGGATG
GCACCAATGCGCAGCTCTCGTCGGAGATGGCGGGACACGGGCAGGGCCAC
AGCAGCAGCAGCAGTGGCAGTGGCAATGCGTACCCAACTCCGAGCCACCT
GCACCCACACCTCTCGTCGGAGATGGCGGGACACGGGCAGGGCCACAGCA
GCAGCAGCAGTGGCAGTGGCAATGCGTACCCAACTCCGAGCCACCTGCAC
CCACAC
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