prot_L-elsbetiae_contig48.12667.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig48.12667.1
Unique Nameprot_L-elsbetiae_contig48.12667.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length235
Homology
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 6.100e-97
Identity = 163/190 (85.79%), Postives = 169/190 (88.95%), Query Frame = 0
Query:   56 MVREEGFASS----MPHGGM-ASRQQQQQQV-----ATGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPAQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDPRSVEL 235
            MVR++GFA++      HG M ASR  Q QQ      + GREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDL SVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECP QLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGD RSV+L
Sbjct:    1 MVRDDGFAAAPQMQQHHGSMSASRHHQPQQQPLGSSSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDL 190          
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Match: A0A835ZGS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS8_9STRA)

HSP 1 Score: 233 bits (593), Expect = 1.100e-73
Identity = 114/138 (82.61%), Postives = 129/138 (93.48%), Query Frame = 0
Query:   98 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPAQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDPRSVEL 235
            YSIKRCQGFVRCDMDIDAEVVGWVIGK+GSTIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAKSV+AYVAAAPIKAGAVEAAVT++++CP  LLD LGDR TIARIVKET AQVVVNKK+ R+IVRG P +V++
Sbjct:   42 YSIKRCQGFVRCDMDIDAEVVGWVIGKSGSTIKDLKNKTGCNMWVDQRALKLTITGPDVRTVEHAAKSVEAYVAAAPIKAGAVEAAVTRSLDCPPHLLDVLGDRATIARIVKETRAQVVVNKKMARVIVRGGPHAVQM 179          
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Match: A0A835YT56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT56_9STRA)

HSP 1 Score: 229 bits (583), Expect = 1.860e-69
Identity = 111/138 (80.43%), Postives = 127/138 (92.03%), Query Frame = 0
Query:   98 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPAQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDPRSVEL 235
            YSIKRCQGF+RCDMDIDAEVVGWVIG+NGSTIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAK V+AYVAAAPIKAGAVEAAVT+++ECP  LLD LGDR TIARIVKET AQVVVNKK+ R+I+RG+  +V +
Sbjct:   57 YSIKRCQGFIRCDMDIDAEVVGWVIGRNGSTIKDLKNKTGCNMWVDQRALKLTITGPDVCAVEHAAKCVEAYVAAAPIKAGAVEAAVTRSLECPPHLLDMLGDRATIARIVKETRAQVVVNKKMARVIIRGNAHAVHM 194          
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 7.710e-29
Identity = 68/141 (48.23%), Postives = 94/141 (66.67%), Query Frame = 0
Query:  100 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPAQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDPRSVEL 235
            ++R  GFVRC MDI  EVVGWVIG++G+ IK+MKH++GC MWVDQ+ LKL ITG D+  +  AA  V   ++ AP+    AG  +   +  IECP  L+  L  R  +TI RI +E+ A VV+N+K+ ++IV G P+SV L
Sbjct:   25 LERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRL 165          
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Match: A0A835YRS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 6.270e-24
Identity = 60/127 (47.24%), Postives = 86/127 (67.72%), Query Frame = 0
Query:  100 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPAQLLDDLGDR--TTIARIVKETHAQVVVNKKI 221
            +++  GFVRC +DI  EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+  +  AA  V   ++ AP+    AG  +  V++ I+CP  L+  L  R  +TI RI +E+ A VV+N+K+
Sbjct:  292 LEKFPGFVRCVIDIAPEVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKAPVNMNAAGVDDEVVSQMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKM 418          
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Match: A0A6H5JET1_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 7.150e-14
Identity = 46/109 (42.20%), Postives = 68/109 (62.39%), Query Frame = 0
Query:  132 MKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPAQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDPRSVEL 235
            ++H++GC MWVDQ+ LKL ITG D+  +  AA  V   ++ AP+    AG  +   +  IECP  L+  L  R  +TI RI +E+ A VV+N+K+ ++IV G P+SV L
Sbjct:   59 LRHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRL 167          
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Match: A0A836CJQ9_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.870e-10
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 0
Query:  116 EVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAP 174
            EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+  +  AA  V   ++  P
Sbjct:  318 EVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKVP 376          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FQB1_ECTSI6.100e-9785.79SAM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZGS8_9STRA1.100e-7382.61Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YT56_9STRA1.860e-6980.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FHT5_ECTSI7.710e-2948.23SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YRS0_9STRA6.270e-2447.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JET1_9PHAE7.150e-1442.20SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CJQ9_9STRA1.870e-1055.93SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 105..171
e-value: 8.6E-8
score: 41.9
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 107..171
e-value: 4.0E-12
score: 47.9
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 106..173
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 110..166
e-value: 2.1E-10
score: 40.3
NoneNo IPR availablePANTHERPTHR10288:SF179HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Kcoord: 116..222
NoneNo IPR availablePANTHERPTHR10288KH DOMAIN CONTAINING RNA BINDING PROTEINcoord: 79..162
NoneNo IPR availablePANTHERPTHR10288KH DOMAIN CONTAINING RNA BINDING PROTEINcoord: 116..222
NoneNo IPR availablePANTHERPTHR10288:SF179HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Kcoord: 79..162
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 106..166
score: 12.705

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig48contigL-elsbetiae_contig48:17057..19412 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig48.12667.1mRNA_L-elsbetiae_contig48.12667.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig48 17057..19724 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig48.12667.1 ID=prot_L-elsbetiae_contig48.12667.1|Name=mRNA_L-elsbetiae_contig48.12667.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=235bp
MAPIFHQMDSNHMAHHAAWEDTRQARPGAPLPHHQQQHQQHQSWPTQGPL
HINPGMVREEGFASSMPHGGMASRQQQQQQVATGREVLGEGSFMGRGYSI
KRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLT
ITGPDLSSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPAQLLDDLGD
RTTIARIVKETHAQVVVNKKIGRIIVRGDPRSVEL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1