mRNA_L-elsbetiae_contig48.12667.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI) HSP 1 Score: 305 bits (780), Expect = 2.860e-95 Identity = 163/190 (85.79%), Postives = 169/190 (88.95%), Query Frame = 1 Query: 478 MVREEGFASS----MPHGGM-ASRQQQQQQV-----ATGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPAQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDPRSVEL 1017 MVR++GFA++ HG M ASR Q QQ + GREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDL SVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECP QLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGD RSV+L Sbjct: 1 MVRDDGFAAAPQMQQHHGSMSASRHHQPQQQPLGSSSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDL 190
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Match: A0A835ZGS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS8_9STRA) HSP 1 Score: 233 bits (593), Expect = 4.020e-72 Identity = 114/138 (82.61%), Postives = 129/138 (93.48%), Query Frame = 1 Query: 604 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPAQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDPRSVEL 1017 YSIKRCQGFVRCDMDIDAEVVGWVIGK+GSTIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAKSV+AYVAAAPIKAGAVEAAVT++++CP LLD LGDR TIARIVKET AQVVVNKK+ R+IVRG P +V++ Sbjct: 42 YSIKRCQGFVRCDMDIDAEVVGWVIGKSGSTIKDLKNKTGCNMWVDQRALKLTITGPDVRTVEHAAKSVEAYVAAAPIKAGAVEAAVTRSLDCPPHLLDVLGDRATIARIVKETRAQVVVNKKMARVIVRGGPHAVQM 179
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Match: A0A835YT56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT56_9STRA) HSP 1 Score: 229 bits (583), Expect = 6.650e-68 Identity = 111/138 (80.43%), Postives = 127/138 (92.03%), Query Frame = 1 Query: 604 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPAQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDPRSVEL 1017 YSIKRCQGF+RCDMDIDAEVVGWVIG+NGSTIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAK V+AYVAAAPIKAGAVEAAVT+++ECP LLD LGDR TIARIVKET AQVVVNKK+ R+I+RG+ +V + Sbjct: 57 YSIKRCQGFIRCDMDIDAEVVGWVIGRNGSTIKDLKNKTGCNMWVDQRALKLTITGPDVCAVEHAAKCVEAYVAAAPIKAGAVEAAVTRSLECPPHLLDMLGDRATIARIVKETRAQVVVNKKMARVIIRGNAHAVHM 194
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI) HSP 1 Score: 124 bits (310), Expect = 1.150e-27 Identity = 68/141 (48.23%), Postives = 94/141 (66.67%), Query Frame = 1 Query: 610 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPAQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDPRSVEL 1017 ++R GFVRC MDI EVVGWVIG++G+ IK+MKH++GC MWVDQ+ LKL ITG D+ + AA V ++ AP+ AG + + IECP L+ L R +TI RI +E+ A VV+N+K+ ++IV G P+SV L Sbjct: 25 LERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRL 165
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Match: A0A835YRS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS0_9STRA) HSP 1 Score: 110 bits (274), Expect = 8.240e-23 Identity = 60/127 (47.24%), Postives = 86/127 (67.72%), Query Frame = 1 Query: 610 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPAQLLDDLGDR--TTIARIVKETHAQVVVNKKI 975 +++ GFVRC +DI EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+ + AA V ++ AP+ AG + V++ I+CP L+ L R +TI RI +E+ A VV+N+K+ Sbjct: 292 LEKFPGFVRCVIDIAPEVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKAPVNMNAAGVDDEVVSQMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKM 418
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Match: A0A836CJQ9_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ9_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 5.450e-17 Identity = 58/155 (37.42%), Postives = 83/155 (53.55%), Query Frame = 1 Query: 658 EVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPI---------------------------------KAGAVEAAVTKTIECPAQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDPRSVEL 1017 EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+ + AA V ++ P AG + V++ ++CP L+ L R +TI RI +E+ A VV+N+K+ ++IV G P+SV L Sbjct: 318 EVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKVPYVPSFKGMYRAYQXXXXXXXXXXXXXXXXXVNVSAAGVEDEVVSQMMDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRL 472
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Match: A0A6H5JET1_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET1_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 5.030e-13 Identity = 46/109 (42.20%), Postives = 68/109 (62.39%), Query Frame = 1 Query: 706 MKHKTGCNMWVDQRALKLTITGPDLSSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPAQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDPRSVEL 1017 ++H++GC MWVDQ+ LKL ITG D+ + AA V ++ AP+ AG + + IECP L+ L R +TI RI +E+ A VV+N+K+ ++IV G P+SV L Sbjct: 59 LRHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRL 167 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig48.12667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig48.12667.1 >prot_L-elsbetiae_contig48.12667.1 ID=prot_L-elsbetiae_contig48.12667.1|Name=mRNA_L-elsbetiae_contig48.12667.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=235bp MAPIFHQMDSNHMAHHAAWEDTRQARPGAPLPHHQQQHQQHQSWPTQGPLback to top mRNA from alignment at L-elsbetiae_contig48:17057..19724- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig48.12667.1 ID=mRNA_L-elsbetiae_contig48.12667.1|Name=mRNA_L-elsbetiae_contig48.12667.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2668bp|location=Sequence derived from alignment at L-elsbetiae_contig48:17057..19724- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig48:17057..19724- >mRNA_L-elsbetiae_contig48.12667.1 ID=mRNA_L-elsbetiae_contig48.12667.1|Name=mRNA_L-elsbetiae_contig48.12667.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1410bp|location=Sequence derived from alignment at L-elsbetiae_contig48:17057..19724- (Laminarionema elsbetiae ELsaHSoW15)back to top |