prot_L-elsbetiae_contig19837.5931.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig19837.5931.1
Unique Nameprot_L-elsbetiae_contig19837.5931.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length190
Homology
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BLAST of mRNA_L-elsbetiae_contig19837.5931.1 vs. uniprot
Match: D8LEH3_ECTSI (VHS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH3_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 2.300e-69
Identity = 129/174 (74.14%), Postives = 141/174 (81.03%), Query Frame = 0 
Query:    1 MRRIRKCFKSGHAQVVLRALDLTDVLMQSCGPHARREVASDKFLKQVGKLCKVTKTRLDPSWQTVSERAQELVAGWAEASQGAGGSGNKFTQMYESLRRDGVPFRGGSGXXXXXXXXXXXXXXXXXXX-----------RFRTTGGNVLRPGDEGYDEEADLAAAIFASNISAT 163
            MRRIRKCFKS + QVVLRALDLTD LMQSCG HARREV+SDKFLK +GKLCKVTKTRLDPSWQTVSERAQ+LV GWAEAS+   GSG++FTQ+YE+LRRDGV FRGGSG          XXXXXXXXX           RFR+ GG+VLRPGDEGYDEEADLAAAIFAS+IS T
Sbjct:   60 MRRIRKCFKSSNTQVVLRALDLTDTLMQSCGSHARREVSSDKFLKLIGKLCKVTKTRLDPSWQTVSERAQDLVVGWAEASERMVGSGSRFTQLYENLRRDGVLFRGGSGSGGRNGAIGAXXXXXXXXXXXXXXXXXXXXRFRSAGGSVLRPGDEGYDEEADLAAAIFASSISGT 233
[Close]
BLAST of mRNA_L-elsbetiae_contig19837.5931.1 vs. uniprot
Match: A0A6H5JQS7_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS7_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 1.620e-61
Identity = 137/180 (76.11%), Postives = 148/180 (82.22%), Query Frame = 0 
Query:    1 MRRIRKCFKSGHAQVVLRALDLTDVLMQSCGPHARREVASDKFLKQVGKLCKVTKTRLDPSWQTVSERAQELVAGWAEASQGAGGSGNKFTQMYESLRRDGVPFRGGSGXXXXXXXXXXXXXXXXXXX-----------------RFRTTGGNVLRPGDEGYDEEADLAAAIFASNISAT 163
            MRRIRKCFKS + QVVLRALDLTD LMQSCG HARREV+SDKFLK +GKLCKVTKTRLDPSWQ VSERAQELVAGWA  S+   GSG++FTQ+YE+LRRDGVPFRGGS XXXXXXXXXXXXXXXXXXX                 RFR+ GG+VLRPGDE YDEEADLAAAIFAS+IS T
Sbjct:   60 MRRIRKCFKSSNTQVVLRALDLTDTLMQSCGSHARREVSSDKFLKVIGKLCKVTKTRLDPSWQMVSERAQELVAGWA--SERMVGSGSRFTQLYENLRRDGVPFRGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRFRSAGGSVLRPGDESYDEEADLAAAIFASSISGT 237
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19837.5931.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEH3_ECTSI2.300e-6974.14VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQS7_9PHAE1.620e-6176.11VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008942ENTH/VHSGENE3D1.25.40.90coord: 1..107
e-value: 1.2E-19
score: 72.4
IPR008942ENTH/VHSSUPERFAMILY48464ENTH/VHS domaincoord: 1..104
IPR002014VHS domainPFAMPF00790VHScoord: 1..99
e-value: 1.1E-9
score: 38.2
IPR002014VHS domainPROSITEPS50179VHScoord: 1..105
score: 18.306

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19837contigL-elsbetiae_contig19837:97..2521 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19837.5931.1mRNA_L-elsbetiae_contig19837.5931.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig19837 85..2521 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig19837.5931.1 ID=prot_L-elsbetiae_contig19837.5931.1|Name=mRNA_L-elsbetiae_contig19837.5931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
MRRIRKCFKSGHAQVVLRALDLTDVLMQSCGPHARREVASDKFLKQVGKL
CKVTKTRLDPSWQTVSERAQELVAGWAEASQGAGGSGNKFTQMYESLRRD
GVPFRGGSGGGGVGAMARGAGGGGSGSGRFRTTGGNVLRPGDEGYDEEAD
LAAAIFASNISATGAAGGAGAGGARGGGAGGLPAASGGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008942ENTH_VHS
IPR002014VHS_dom