mRNA_L-elsbetiae_contig19837.5931.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19837.5931.1
Unique NamemRNA_L-elsbetiae_contig19837.5931.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19837.5931.1 vs. uniprot
Match: D8LEH3_ECTSI (VHS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH3_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 6.870e-73
Identity = 133/178 (74.72%), Postives = 145/178 (81.46%), Query Frame = 1 
Query:    1 VYEVMRRIRKCFKSGHAQVVLRALDLTDVLMQSCGPHARREVASDKFLKQVGKLCKVTKTRLDPSWQTVSERAQELVAGWAEASQGAGGSGNKFTQMYESLRRDGVPFRGGSGXXXXXXXXXXXXXXXXXXX-----------RFRTTGGNVLRPGDEGYDEEADLAAAIFASNISAT 501
            VYEVMRRIRKCFKS + QVVLRALDLTD LMQSCG HARREV+SDKFLK +GKLCKVTKTRLDPSWQTVSERAQ+LV GWAEAS+   GSG++FTQ+YE+LRRDGV FRGGSG          XXXXXXXXX           RFR+ GG+VLRPGDEGYDEEADLAAAIFAS+IS T
Sbjct:   56 VYEVMRRIRKCFKSSNTQVVLRALDLTDTLMQSCGSHARREVSSDKFLKLIGKLCKVTKTRLDPSWQTVSERAQDLVVGWAEASERMVGSGSRFTQLYENLRRDGVLFRGGSGSGGRNGAIGAXXXXXXXXXXXXXXXXXXXXRFRSAGGSVLRPGDEGYDEEADLAAAIFASSISGT 233
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BLAST of mRNA_L-elsbetiae_contig19837.5931.1 vs. uniprot
Match: A0A6H5JQS7_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS7_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 9.120e-65
Identity = 141/184 (76.63%), Postives = 152/184 (82.61%), Query Frame = 1 
Query:    1 VYEVMRRIRKCFKSGHAQVVLRALDLTDVLMQSCGPHARREVASDKFLKQVGKLCKVTKTRLDPSWQTVSERAQELVAGWAEASQGAGGSGNKFTQMYESLRRDGVPFRGGSGXXXXXXXXXXXXXXXXXXX-----------------RFRTTGGNVLRPGDEGYDEEADLAAAIFASNISAT 501
            VYEVMRRIRKCFKS + QVVLRALDLTD LMQSCG HARREV+SDKFLK +GKLCKVTKTRLDPSWQ VSERAQELVAGWA  S+   GSG++FTQ+YE+LRRDGVPFRGGS XXXXXXXXXXXXXXXXXXX                 RFR+ GG+VLRPGDE YDEEADLAAAIFAS+IS T
Sbjct:   56 VYEVMRRIRKCFKSSNTQVVLRALDLTDTLMQSCGSHARREVSSDKFLKVIGKLCKVTKTRLDPSWQMVSERAQELVAGWA--SERMVGSGSRFTQLYENLRRDGVPFRGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRFRSAGGSVLRPGDESYDEEADLAAAIFASSISGT 237
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19837.5931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEH3_ECTSI6.870e-7374.72VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQS7_9PHAE9.120e-6576.63VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19837contigL-elsbetiae_contig19837:85..2521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-21_004690.1
Exons3
Model size582
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19837.5931.1prot_L-elsbetiae_contig19837.5931.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19837 97..2521 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815821.142872-UTR-L-elsbetiae_contig19837:84..961622815821.142872-UTR-L-elsbetiae_contig19837:84..96Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19837 85..96 +
1691683124.6992097-UTR-L-elsbetiae_contig19837:84..961691683124.6992097-UTR-L-elsbetiae_contig19837:84..96Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig19837 85..96 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815821.1526883-CDS-L-elsbetiae_contig19837:96..2521622815821.1526883-CDS-L-elsbetiae_contig19837:96..252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19837 97..252 +
1691683124.7101693-CDS-L-elsbetiae_contig19837:96..2521691683124.7101693-CDS-L-elsbetiae_contig19837:96..252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19837 97..252 +
1622815821.166476-CDS-L-elsbetiae_contig19837:1000..10931622815821.166476-CDS-L-elsbetiae_contig19837:1000..1093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19837 1001..1093 +
1691683124.721354-CDS-L-elsbetiae_contig19837:1000..10931691683124.721354-CDS-L-elsbetiae_contig19837:1000..1093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19837 1001..1093 +
1622815821.1814363-CDS-L-elsbetiae_contig19837:2200..25211622815821.1814363-CDS-L-elsbetiae_contig19837:2200..2521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19837 2201..2521 +
1691683124.7319794-CDS-L-elsbetiae_contig19837:2200..25211691683124.7319794-CDS-L-elsbetiae_contig19837:2200..2521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19837 2201..2521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19837.5931.1

>prot_L-elsbetiae_contig19837.5931.1 ID=prot_L-elsbetiae_contig19837.5931.1|Name=mRNA_L-elsbetiae_contig19837.5931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
MRRIRKCFKSGHAQVVLRALDLTDVLMQSCGPHARREVASDKFLKQVGKL
CKVTKTRLDPSWQTVSERAQELVAGWAEASQGAGGSGNKFTQMYESLRRD
GVPFRGGSGGGGVGAMARGAGGGGSGSGRFRTTGGNVLRPGDEGYDEEAD
LAAAIFASNISATGAAGGAGAGGARGGGAGGLPAASGGE*
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mRNA from alignment at L-elsbetiae_contig19837:85..2521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19837.5931.1 ID=mRNA_L-elsbetiae_contig19837.5931.1|Name=mRNA_L-elsbetiae_contig19837.5931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2437bp|location=Sequence derived from alignment at L-elsbetiae_contig19837:85..2521+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTACGAGGTGATGCGGCGCATCCGCAAGTGCTTCAAGTCCGGCCACGC
GCAGGTGGTGCTGAGGGCCCTCGACCTGACGGACGTCCTCATGCAGTCGT
GCGGCCCGCACGCGCGGAGGGAGGTGGCCTCCGACAAGTTTCTCAAGCAA
GTCGGGAAGCTGTGCAAGGTCCGTTCGTTCGTTCATGCCGTGTCGGGTCG
GGTCGGGTGTCAGTTGTCGGGTGGTTCGGGCCCATTCCGTTCGGTTCGGT
TCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTCGGT
GTGGTTCGGTCCGATCCGGTCTGGTTTGGTTTGGTTCTGTTTCTGTTTTC
TGTTCTGTTCCTTTCCGTTCGGTTCGGTTCGGTTCGGTTCGCCTACTTGG
AATGGTTGATTGTGTCATGACATTCCGCCCAAGTATGTACACCCCCGTCT
GTCCGGCCCAGGTGGAAACCTGACGGGGTGGGCTGAGTCGAGTCCCTTTG
CAGTGCTTTCTTTCTGACGGGAAATCTCGGAGGTTGTTGCGCCACCACCC
TAACACACACACAGGCGTATTGTATGCATGTATTTGTGTACATATGCCTT
TGACTCGAAGCTCCTGCTGCTGCTTGCTTGCGGCACTACTGTTCATGCCA
CCACCACTAAAAAAAAACGTTGCTGTCTCCGTATTTTTTAGCTTGGCCTC
GACGCCAGGCGAAACGACTTTCGTCTGTCTGCGTTTCACGTCCTCGTACA
TACAGATTACATACTTTTGTTGGTGCATGAATACTATAGTATAACTTTTA
CAAAAATGGAAGAGCTCAAAATAGAAGAGCTCAAAATAGAAGAGCTCAAT
ACCTGTTTCGTATTTTCTGCAAATCTAAATCTACGTTTATGTGTGTGTGT
GTGTATTCGAAAGCAGGTGACCAAGACGAGGCTCGACCCGTCGTGGCAGA
CAGTGTCCGAGCGGGCGCAAGAGCTGGTCGCCGGATGGGCCGAAGCCAGC
CAGGGAGCGGTAAGCAGGCAGCACCAGCCAGCCGCCGGATATAATATACC
ATGATACATATTTACATACTATACAAAAACAGACGAAGTTTTGTGTGCGT
TTTGACCAAGAGCACACCAAAAGGCAGGCAGGCAGGCAGGCAGGCAGGCA
GCACCTTTATTTATGCCCCCCCCCCCCCTTTATTTTTGAAGGGCTATTGA
CCAACCAGTGTAAGTGTGTGTGTGTGTGTAGTTTTCCCCTTCTCTTATTG
GCTTATTCGTCGTCTGCTCCACTGCCCCCATCCTCCACTACGACGAGCTA
GACGACCCAACCGGGCTGTGTGTGTGTGTGTGTGCTTGTTTGTACTCGGA
CAGTCGGAAGGGGGCTGGCTATTCGTGAAAGGGCGTTGGAACTATTATAT
ATATACGTAAATGCTGATCGACACCACCCCCGTCTGCGGGAGGGACGCCA
GGAATGTTTTTCCACAGACCGCTAGATATAGTCCACATGCTTTACGATAT
AGGTACTCTCTTTTGGGGGGGGGCTCCGCGACCCGCTCTCCTCCCCTCCC
CTCCCCTTCCCCCTCCGACCCGACGCATCTTCTTTGGTTGGGCTAACCGT
TGCTGTGACCGCGAAAAGATATCCGCCTCACGATTGAATCCGTCCGTTCG
GAGTATTCATAGTAGTTAATTCACAGATGCCACTGTTGCGCTTGTTTTGT
ACATGAGAGATACGGCCTCTACTTTTATGTATGTATCTCTCGTCTACCCC
CCACCACTATTGTACATGACAAGCAACATCTATCTACCAACGGGCGGGCA
GCATCTGCTTCTATTGTATTTACCGACATCGACCGCGACCGCGTCCTCTT
CTCTGCCGTGAACCTCGGTAGGCTTTTGATCAAACCTCACCCCGGAGAGG
GAGAGAGAGCACACACCACGCGGGAACGACAACGAAGAAGAACAAACCAA
CGCGCACACCCATGCATACACACACACACACACACTGACACGCATGCATA
TAAATAAATATATAGAGTAGAGATACCTGGCCCAATCCAATGGATCATAC
TTTTTTTTTTTCTTTTTCTATCGTATCCGTCCGCGAAACCTCGGTCGACG
GGACGGGGACACACAGGGGGGGTCCGGAAACAAGTTCACCCAGATGTACG
AAAGTCTCAGGCGCGACGGCGTGCCCTTCAGGGGGGGCTCGGGCGGGGGG
GGCGTGGGGGCGATGGCGCGCGGCGCCGGCGGCGGCGGTAGCGGTAGCGG
CCGCTTTCGGACTACGGGGGGCAACGTCCTCCGGCCGGGAGACGAGGGGT
ATGACGAGGAGGCCGACCTCGCCGCCGCTATCTTCGCCAGCAATATCTCG
GCGACGGGGGCGGCGGGCGGGGCTGGCGCCGGCGGGGCCCGGGGCGGGGG
AGCCGGCGGATTGCCCGCTGCGTCCGGGGGTGAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19837:85..2521+

>mRNA_L-elsbetiae_contig19837.5931.1 ID=mRNA_L-elsbetiae_contig19837.5931.1|Name=mRNA_L-elsbetiae_contig19837.5931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig19837:85..2521+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCGCATCCGCAAGTGCTTCAAGTCCGGCCACGCGCAGGTGGTGCT
GAGGGCCCTCGACCTGACGGACGTCCTCATGCAGTCGTGCGGCCCGCACG
CGCGGAGGGAGGTGGCCTCCGACAAGTTTCTCAAGCAAGTCGGGAAGCTG
TGCAAGATGCGGCGCATCCGCAAGTGCTTCAAGTCCGGCCACGCGCAGGT
GGTGCTGAGGGCCCTCGACCTGACGGACGTCCTCATGCAGTCGTGCGGCC
CGCACGCGCGGAGGGAGGTGGCCTCCGACAAGTTTCTCAAGCAAGTCGGG
AAGCTGTGCAAGGTGACCAAGACGAGGCTCGACCCGTCGTGGCAGACAGT
GTCCGAGCGGGCGCAAGAGCTGGTCGCCGGATGGGCCGAAGCCAGCCAGG
GAGCGGTGACCAAGACGAGGCTCGACCCGTCGTGGCAGACAGTGTCCGAG
CGGGCGCAAGAGCTGGTCGCCGGATGGGCCGAAGCCAGCCAGGGAGCGGG
GGGGTCCGGAAACAAGTTCACCCAGATGTACGAAAGTCTCAGGCGCGACG
GCGTGCCCTTCAGGGGGGGCTCGGGCGGGGGGGGCGTGGGGGCGATGGCG
CGCGGCGCCGGCGGCGGCGGTAGCGGTAGCGGCCGCTTTCGGACTACGGG
GGGCAACGTCCTCCGGCCGGGAGACGAGGGGTATGACGAGGAGGCCGACC
TCGCCGCCGCTATCTTCGCCAGCAATATCTCGGCGACGGGGGCGGCGGGC
GGGGCTGGCGCCGGCGGGGCCCGGGGCGGGGGAGCCGGCGGATTGCCCGC
TGCGTCCGGGGGTGAGTGAGGGGGGTCCGGAAACAAGTTCACCCAGATGT
ACGAAAGTCTCAGGCGCGACGGCGTGCCCTTCAGGGGGGGCTCGGGCGGG
GGGGGCGTGGGGGCGATGGCGCGCGGCGCCGGCGGCGGCGGTAGCGGTAG
CGGCCGCTTTCGGACTACGGGGGGCAACGTCCTCCGGCCGGGAGACGAGG
GGTATGACGAGGAGGCCGACCTCGCCGCCGCTATCTTCGCCAGCAATATC
TCGGCGACGGGGGCGGCGGGCGGGGCTGGCGCCGGCGGGGCCCGGGGCGG
GGGAGCCGGCGGATTGCCCGCTGCGTCCGGGGGTGAGTGA
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