prot_L-elsbetiae_contig19682.5872.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig19682.5872.1
Unique Nameprot_L-elsbetiae_contig19682.5872.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length56
Homology
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: A0A6H5L901_9PHAE (LsmAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L901_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.170e-20
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0
Query:    1 RLFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREERNMV 55
            +LFNV STFDENLYTTPLD  SLSR QMA AERMAAEIEGKTSSNIHMREERNM+
Sbjct:  260 KLFNVTSTFDENLYTTPLDTGSLSRAQMAHAERMAAEIEGKTSSNIHMREERNML 314          
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: D7FVW6_ECTSI (LsmAD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW6_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 7.580e-20
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 0
Query:    2 LFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREERNMV 55
            LFNV STFDENLYTTPLD  SLSR QMA AERMAAEIEGKTS NIHMREERNM+
Sbjct:  263 LFNVTSTFDENLYTTPLDTGSLSRAQMAHAERMAAEIEGKTSGNIHMREERNML 316          
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: A0A7S3Y065_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y065_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 1.760e-14
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    1 RLFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREERNMV 55
            RLFNV+STFDENLYTT LD+ +L+  Q+A AER+A EIEGK ++N+H+ EER   
Sbjct:   22 RLFNVRSTFDENLYTTALDRGALTAAQLAAAERLAREIEGKKATNLHLAEERGQA 76          
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: A0A7S1TU51_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU51_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.140e-12
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0
Query:    1 RLFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREER 52
            RL+ VK+TFDENLYTT LDK   +  QM  AER+A EIEGK SSN+HM EER
Sbjct:  191 RLYGVKNTFDENLYTTRLDKGKFTETQMREAERLAREIEGKKSSNVHMAEER 242          
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: UPI0006447D7B (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006447D7B)

HSP 1 Score: 67.8 bits (164), Expect = 7.490e-12
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 0
Query:    1 RLFNVKSTFDENLYTTPLDKESLSREQ-MARAERMAAEIEGKTSSNIHMREERNMVR 56
            +LF VK++++ENLYTT LD+ S S  Q +  AE++AAEIEGKTSSNIHM EERN+V+
Sbjct:  230 KLFKVKTSYNENLYTTELDRHSDSYHQRLKEAEKIAAEIEGKTSSNIHMLEERNLVK 286          
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: A0A1W0ACN4_9STRA (LsmAD domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACN4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.390e-11
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0
Query:    1 RLFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREERNM 54
            +LF V STFDENLYTT L+K  ++ EQ+  AE+MA EIE +TSSN H+ EERN+
Sbjct:  189 KLFGVTSTFDENLYTTKLEKSKITPEQIRAAEQMAREIESQTSSNFHLMEERNL 242          
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: B5YMG3_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMG3_THAPS)

HSP 1 Score: 65.5 bits (158), Expect = 4.880e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 0
Query:    3 FNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREERNMV 55
            FNVK+TFDENLYTT LD  S+   ++A AER+A EIE   SSNIH+ EERN  
Sbjct:  358 FNVKATFDENLYTTQLDLSSMDSAKLAEAERIAKEIESTASSNIHIAEERNQA 410          
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: A0A1V9YD69_9STRA (PAB1 binding protein (Pbp1) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YD69_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 9.030e-11
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0
Query:    1 RLFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREERNMV 55
            +LF V STFDEN+YTT L+K  ++  Q+  AE+MA EIE +TSSN H+ EERN+ 
Sbjct:  192 KLFGVTSTFDENIYTTKLEKSKMTPAQVRAAEKMAREIESQTSSNFHLMEERNLA 246          
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: A0A5D6XM93_9STRA (LsmAD domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XM93_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.240e-10
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 0
Query:    1 RLFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREER 52
            +LF V STFDEN+YTT LDK  +S +Q   AER+A EIE +TSSN H++EER
Sbjct:  191 KLFGVVSTFDENIYTTKLDKSKISTQQSREAERIALEIERQTSSNFHLQEER 242          
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: F4PU17_CAVFA (Ataxin-2 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PU17_CAVFA)

HSP 1 Score: 64.3 bits (155), Expect = 1.250e-10
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 0
Query:    1 RLFNVKSTFDENLYTTPLDKESLS-REQMARAERMAAEIEGKTSSNIHMREERNMVR 56
            +LF V S++DE+LYTT LD++S S R ++  AER+A EIEGKTSSN+HM+EER  V+
Sbjct:  230 KLFGVTSSYDEDLYTTSLDRQSDSYRNRLRDAERIAQEIEGKTSSNLHMQEERGQVK 286          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L901_9PHAE1.170e-2087.27LsmAD domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FVW6_ECTSI7.580e-2087.04LsmAD domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3Y065_HETAK1.760e-1461.82Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1TU51_9STRA2.140e-1267.31Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI0006447D7B7.490e-1263.16hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A1W0ACN4_9STRA1.390e-1161.11LsmAD domain-containing protein n=1 Tax=Thraustoth... [more]
B5YMG3_THAPS4.880e-1162.26Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A1V9YD69_9STRA9.030e-1156.36PAB1 binding protein (Pbp1) n=1 Tax=Achlya hypogyn... [more]
A0A5D6XM93_9STRA1.240e-1061.54LsmAD domain-containing protein n=1 Tax=Pythium br... [more]
F4PU17_CAVFA1.250e-1059.65Ataxin-2 n=1 Tax=Cavenderia fasciculata (strain SH... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009604LsmAD domainSMARTSM01272LsmAD_2coord: 3..56
e-value: 2.3E-18
score: 77.0
IPR009604LsmAD domainPFAMPF06741LsmADcoord: 3..54
e-value: 8.9E-21
score: 74.2
NoneNo IPR availablePANTHERPTHR12854:SF7ATAXIN-2 HOMOLOGcoord: 1..52
NoneNo IPR availablePANTHERPTHR12854ATAXIN 2-RELATEDcoord: 1..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19682contigL-elsbetiae_contig19682:74..241 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19682.5872.1mRNA_L-elsbetiae_contig19682.5872.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig19682 74..241 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig19682.5872.1 ID=prot_L-elsbetiae_contig19682.5872.1|Name=mRNA_L-elsbetiae_contig19682.5872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
RLFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMRE
ERNMVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009604LsmAD_domain