mRNA_L-elsbetiae_contig19682.5872.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19682.5872.1
Unique NamemRNA_L-elsbetiae_contig19682.5872.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: A0A6H5L901_9PHAE (LsmAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L901_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.170e-20
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 RLFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREERNMV 165
            +LFNV STFDENLYTTPLD  SLSR QMA AERMAAEIEGKTSSNIHMREERNM+
Sbjct:  260 KLFNVTSTFDENLYTTPLDTGSLSRAQMAHAERMAAEIEGKTSSNIHMREERNML 314
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BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: D7FVW6_ECTSI (LsmAD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW6_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 7.580e-20
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    4 LFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREERNMV 165
            LFNV STFDENLYTTPLD  SLSR QMA AERMAAEIEGKTS NIHMREERNM+
Sbjct:  263 LFNVTSTFDENLYTTPLDTGSLSRAQMAHAERMAAEIEGKTSGNIHMREERNML 316
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BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: A0A7S3Y065_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y065_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 1.760e-14
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 RLFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREERNMV 165
            RLFNV+STFDENLYTT LD+ +L+  Q+A AER+A EIEGK ++N+H+ EER   
Sbjct:   22 RLFNVRSTFDENLYTTALDRGALTAAQLAAAERLAREIEGKKATNLHLAEERGQA 76
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BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: A0A7S1TU51_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU51_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.140e-12
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RLFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREER 156
            RL+ VK+TFDENLYTT LDK   +  QM  AER+A EIEGK SSN+HM EER
Sbjct:  191 RLYGVKNTFDENLYTTRLDKGKFTETQMREAERLAREIEGKKSSNVHMAEER 242
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BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: UPI0006447D7B (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006447D7B)

HSP 1 Score: 67.8 bits (164), Expect = 7.490e-12
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RLFNVKSTFDENLYTTPLDKESLSREQ-MARAERMAAEIEGKTSSNIHMREERNMVR 168
            +LF VK++++ENLYTT LD+ S S  Q +  AE++AAEIEGKTSSNIHM EERN+V+
Sbjct:  230 KLFKVKTSYNENLYTTELDRHSDSYHQRLKEAEKIAAEIEGKTSSNIHMLEERNLVK 286
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BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: A0A1W0ACN4_9STRA (LsmAD domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACN4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.390e-11
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 RLFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREERNM 162
            +LF V STFDENLYTT L+K  ++ EQ+  AE+MA EIE +TSSN H+ EERN+
Sbjct:  189 KLFGVTSTFDENLYTTKLEKSKITPEQIRAAEQMAREIESQTSSNFHLMEERNL 242
[Close]
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: B5YMG3_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMG3_THAPS)

HSP 1 Score: 65.5 bits (158), Expect = 4.880e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    7 FNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREERNMV 165
            FNVK+TFDENLYTT LD  S+   ++A AER+A EIE   SSNIH+ EERN  
Sbjct:  358 FNVKATFDENLYTTQLDLSSMDSAKLAEAERIAKEIESTASSNIHIAEERNQA 410
[Close]
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: A0A1V9YD69_9STRA (PAB1 binding protein (Pbp1) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YD69_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 9.030e-11
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 RLFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREERNMV 165
            +LF V STFDEN+YTT L+K  ++  Q+  AE+MA EIE +TSSN H+ EERN+ 
Sbjct:  192 KLFGVTSTFDENIYTTKLEKSKMTPAQVRAAEKMAREIESQTSSNFHLMEERNLA 246
[Close]
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: A0A5D6XM93_9STRA (LsmAD domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XM93_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.240e-10
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RLFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMREER 156
            +LF V STFDEN+YTT LDK  +S +Q   AER+A EIE +TSSN H++EER
Sbjct:  191 KLFGVVSTFDENIYTTKLDKSKISTQQSREAERIALEIERQTSSNFHLQEER 242
[Close]
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Match: F4PU17_CAVFA (Ataxin-2 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PU17_CAVFA)

HSP 1 Score: 64.3 bits (155), Expect = 1.250e-10
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 RLFNVKSTFDENLYTTPLDKESLS-REQMARAERMAAEIEGKTSSNIHMREERNMVR 168
            +LF V S++DE+LYTT LD++S S R ++  AER+A EIEGKTSSN+HM+EER  V+
Sbjct:  230 KLFGVTSSYDEDLYTTSLDRQSDSYRNRLRDAERIAQEIEGKTSSNLHMQEERGQVK 286
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19682.5872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L901_9PHAE1.170e-2087.27LsmAD domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FVW6_ECTSI7.580e-2087.04LsmAD domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3Y065_HETAK1.760e-1461.82Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1TU51_9STRA2.140e-1267.31Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI0006447D7B7.490e-1263.16hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A1W0ACN4_9STRA1.390e-1161.11LsmAD domain-containing protein n=1 Tax=Thraustoth... [more]
B5YMG3_THAPS4.880e-1162.26Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A1V9YD69_9STRA9.030e-1156.36PAB1 binding protein (Pbp1) n=1 Tax=Achlya hypogyn... [more]
A0A5D6XM93_9STRA1.240e-1061.54LsmAD domain-containing protein n=1 Tax=Pythium br... [more]
F4PU17_CAVFA1.250e-1059.65Ataxin-2 n=1 Tax=Cavenderia fasciculata (strain SH... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19682contigL-elsbetiae_contig19682:74..241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue4.6e-16
Seed eggNOG ortholog2880.D7FVW6
Preferred nameATXN2
KEGG rclassRC00004,RC02888,RC02997
KEGG koko:K15397
KEGG ReactionR09419,R10825
KEGG Pathwayko00062,ko01110,map00062,map01110
KEGG ModuleM00415
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000902,GO:0000910,GO:0001654,GO:0001709,GO:0001745,GO:0001751,GO:0001754,GO:0002090,GO:0002091,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005102,GO:0005154,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005794,GO:0005802,GO:0005829,GO:0005844,GO:0006139,GO:0006259,GO:0006403,GO:0006417,GO:0006725,GO:0006807,GO:0006810,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007059,GO:0007088,GO:0007143,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007548,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0007616,GO:0007622,GO:0007623,GO:0007626,GO:0008022,GO:0008064,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0008406,GO:0008585,GO:0009266,GO:0009581,GO:0009582,GO:0009605,GO:0009628,GO:0009653,GO:0009794,GO:0009887,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009994,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010564,GO:0010603,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010720,GO:0010824,GO:0010826,GO:0010941,GO:0010942,GO:0010948,GO:0010968,GO:0012505,GO:0015931,GO:0016020,GO:0016043,GO:0016048,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0019953,GO:0021533,GO:0021549,GO:0021575,GO:0021587,GO:0021680,GO:0021692,GO:0021694,GO:0021695,GO:0021696,GO:0021697,GO:0021702,GO:0021953,GO:0022008,GO:0022037,GO:0022402,GO:0022412,GO:0022414,GO:0022416,GO:0022607,GO:0022613,GO:0022618,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030716,GO:0030832,GO:0030833,GO:0030902,GO:0030953,GO:0031110,GO:0031111,GO:0031113,GO:0031115,GO:0031122,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031333,GO:0031440,GO:0031441,GO:0031644,GO:0031974,GO:0031981,GO:0031984,GO:0032092,GO:0032268,GO:0032270,GO:0032271,GO:0032272,GO:0032465,GO:0032467,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032879,GO:0032880,GO:0032886,GO:0032887,GO:0032888,GO:0032954,GO:0032956,GO:0032970,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033206,GO:0033365,GO:0033962,GO:0034063,GO:0034248,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0035770,GO:0036464,GO:0040001,GO:0040008,GO:0040014,GO:0040015,GO:0040019,GO:0040020,GO:0040038,GO:0042051,GO:0042127,GO:0042461,GO:0042462,GO:0042592,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043393,GO:0043570,GO:0043900,GO:0043902,GO:0043933,GO:0044057,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044380,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045137,GO:0045165,GO:0045475,GO:0045595,GO:0045597,GO:0045727,GO:0045786,GO:0045787,GO:0045806,GO:0045836,GO:0045840,GO:0045926,GO:0045931,GO:0045934,GO:0045977,GO:0045995,GO:0046483,GO:0046530,GO:0046545,GO:0046605,GO:0046606,GO:0046660,GO:0046958,GO:0046959,GO:0048232,GO:0048259,GO:0048261,GO:0048285,GO:0048468,GO:0048471,GO:0048477,GO:0048511,GO:0048512,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048592,GO:0048599,GO:0048608,GO:0048609,GO:0048638,GO:0048640,GO:0048646,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048872,GO:0050657,GO:0050658,GO:0050684,GO:0050686,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050803,GO:0050807,GO:0050877,GO:0050890,GO:0050896,GO:0050905,GO:0051049,GO:0051051,GO:0051093,GO:0051094,GO:0051098,GO:0051099,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051235,GO:0051236,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051293,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051446,GO:0051493,GO:0051494,GO:0051495,GO:0051606,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051651,GO:0051653,GO:0051656,GO:0051657,GO:0051661,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051823,GO:0051983,GO:0051984,GO:0060147,GO:0060149,GO:0060236,GO:0060255,GO:0060281,GO:0060282,GO:0060284,GO:0060322,GO:0060341,GO:0060627,GO:0060631,GO:0060903,GO:0060964,GO:0060965,GO:0060966,GO:0060967,GO:0060968,GO:0060969,GO:0061458,GO:0061640,GO:0061842,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070507,GO:0070727,GO:0070851,GO:0070925,GO:0071539,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072698,GO:0080090,GO:0080154,GO:0090066,GO:0090068,GO:0090169,GO:0090224,GO:0090304,GO:0090328,GO:0090596,GO:0097159,GO:0097167,GO:0097435,GO:0098791,GO:0110028,GO:0110053,GO:0120036,GO:0120039,GO:0140013,GO:1900363,GO:1900364,GO:1901214,GO:1901216,GO:1901360,GO:1901363,GO:1902115,GO:1902412,GO:1902846,GO:1902850,GO:1902903,GO:1902904,GO:1903046,GO:1903047,GO:1903311,GO:1903312,GO:1903436,GO:1903438,GO:1903490,GO:1903827,GO:1903828,GO:1904779,GO:1904780,GO:1905508,GO:1905516,GO:1905833,GO:1905879,GO:1905881,GO:1905936,GO:1905938,GO:1905939,GO:1905941,GO:1990904,GO:2000026,GO:2000112,GO:2000194,GO:2000196,GO:2000241,GO:2000243,GO:2001252
EggNOG free text desc.regulation of cytoplasmic mRNA processing body assembly
EggNOG OGsCOG5180@1,KOG2375@2759
Ec32 ortholog descriptionLsmAD domain
Ec32 orthologEc-01_002400.1
EC2.3.1.199
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815815.598718-CDS-L-elsbetiae_contig19682:73..2411622815815.598718-CDS-L-elsbetiae_contig19682:73..241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19682 74..241 +
1691683120.9269307-CDS-L-elsbetiae_contig19682:73..2411691683120.9269307-CDS-L-elsbetiae_contig19682:73..241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19682 74..241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19682.5872.1prot_L-elsbetiae_contig19682.5872.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19682 74..241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19682.5872.1

>prot_L-elsbetiae_contig19682.5872.1 ID=prot_L-elsbetiae_contig19682.5872.1|Name=mRNA_L-elsbetiae_contig19682.5872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
RLFNVKSTFDENLYTTPLDKESLSREQMARAERMAAEIEGKTSSNIHMRE
ERNMVR
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mRNA from alignment at L-elsbetiae_contig19682:74..241+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19682.5872.1 ID=mRNA_L-elsbetiae_contig19682.5872.1|Name=mRNA_L-elsbetiae_contig19682.5872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=168bp|location=Sequence derived from alignment at L-elsbetiae_contig19682:74..241+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCTGTTCAACGTGAAGAGCACGTTCGACGAGAACCTGTACACGACGCC
GCTGGACAAAGAATCGCTGTCTCGGGAGCAGATGGCGCGCGCCGAGCGCA
TGGCCGCCGAGATCGAGGGGAAAACCAGCAGCAACATCCACATGCGCGAG
GAGCGGAACATGGTGAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19682:74..241+

>mRNA_L-elsbetiae_contig19682.5872.1 ID=mRNA_L-elsbetiae_contig19682.5872.1|Name=mRNA_L-elsbetiae_contig19682.5872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig19682:74..241+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCTGTTCAACGTGAAGAGCACGTTCGACGAGAACCTGTACACGACGCC
GCTGGACAAAGAATCGCTGTCTCGGGAGCAGATGGCGCGCGCCGAGCGCA
TGGCCGCCGAGATCGAGGGGAAAACCAGCAGCAACATCCACATGCGCGAG
GAGCGGAACATGGTGAGAAGGCTGTTCAACGTGAAGAGCACGTTCGACGA
GAACCTGTACACGACGCCGCTGGACAAAGAATCGCTGTCTCGGGAGCAGA
TGGCGCGCGCCGAGCGCATGGCCGCCGAGATCGAGGGGAAAACCAGCAGC
AACATCCACATGCGCGAGGAGCGGAACATGGTGAGA
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