prot_L-elsbetiae_contig1960.5842.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1960.5842.1
Unique Nameprot_L-elsbetiae_contig1960.5842.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length443
Homology
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: D7FH06_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH06_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 5.320e-65
Identity = 346/448 (77.23%), Postives = 350/448 (78.12%), Query Frame = 0
Query:    4 AAAAAVEDLPASALHPLLHSFLLECGLSTTAAALREETGKSSKKLVKAQASLGGGCKDLLEIVNLHRKRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVPKVLTPSK---DPDSNGVANGDGMKTPVKGDGGEANXXXXXXXXXXXXXK------SRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 442
            AAAAAVEDLPASALHPL+HSFLLECGLS TAAALREETGKSSKKL K QA+LGGGCKDLLEIVN HRKRLA                      XXXXXXXX          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                         WVPK LTP+K     DSNGVANGDGMKTP KG      XXXXXXXXXXX  K      SRTQGEAFKRVQD+QWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct:    5 AAAAAVEDLPASALHPLVHSFLLECGLSATAAALREETGKSSKKLGKQQAALGGGCKDLLEIVNAHRKRLAAEAAKAGGDDVQEDMEHTKKESXXXXXXXXKGKANGVKPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------WVPKALTPNKAGXXGDSNGVANGDGMKTPAKGGXXXXXXXXXXXXXXXXTGKKSTGGKSRTQGEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 411          
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A6H5JYW0_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW0_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 6.230e-54
Identity = 121/143 (84.62%), Postives = 124/143 (86.71%), Query Frame = 0
Query:  308 AWVPKVLTPSKDPD--SNGVANGDGMKTPVKGDGGEANXXXXXXXXXXXXXK------SRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 442
            AWVPK LTP+K     SNGVANGDGMKTP KG  G   XXXXXXXXXXXX K      SR+QGEAFKRVQD+QWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct:  378 AWVPKDLTPNKAGGGVSNGVANGDGMKTPAKGGQGXXXXXXXXXXXXXXXGKKSTGGKSRSQGEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 520          
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A7S3Y1Y8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1Y8_HETAK)

HSP 1 Score: 103 bits (258), Expect = 8.310e-22
Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = 0
Query:  359 RTQGEAFKRVQDDQWVGGLKK-GFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 441
            R QGEAFKRV  D W   +K     DN+YEGTFG  GYG KASE L KVRGKDFRHEKTKKKRG+YRGG+I++ S S+KF +SD
Sbjct:  158 RVQGEAFKRVCSDTWGSAIKHDALKDNSYEGTFGGDGYGAKASEVLLKVRGKDFRHEKTKKKRGNYRGGQITLASNSIKFANSD 241          
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A4D9D037_9STRA (SRP40_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D037_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.120e-20
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 0
Query:  359 RTQGEAFKRVQDDQWVGGLKKG-FDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFD 438
            R  GEAF+RV D+ W   +K     DN+Y GTFG GGYG KASEKL  VRGKDFRHEKTKKKRGSYRGG IS+ S+S+K+D
Sbjct:  391 RVSGEAFRRVDDEYWGQQIKDDRLKDNSYAGTFGSGGYGAKASEKLMTVRGKDFRHEKTKKKRGSYRGGTISLESHSIKYD 471          
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A836CH62_9STRA (SRP40, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH62_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.950e-20
Identity = 53/78 (67.95%), Postives = 61/78 (78.21%), Query Frame = 0
Query:  362 GEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDD 439
            GEAF+RV+D++WV  L  G D N YE TFGQ GYG+KA + L  VRGKDFRHEKTKKKRGSYRGG I+M S S KFD+
Sbjct:  443 GEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 520          
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A061RD47_9CHLO (SRP40_C domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RD47_9CHLO)

HSP 1 Score: 100 bits (248), Expect = 4.130e-20
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 0
Query:  360 TQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 441
            T  +AF+RV++++W+G  KKG  DN+Y GTFG  G+G+KA E L KVRGKDFRHEKTKKKRGSYRGG+I + S S KF+  D
Sbjct:  201 TAXKAFQRVREEEWIG--KKGSWDNSYTGTFGAQGWGYKAQEVLGKVRGKDFRHEKTKKKRGSYRGGKIELGSNSFKFESDD 280          
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A8JCQ6_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JCQ6_CHLRE)

HSP 1 Score: 95.1 bits (235), Expect = 4.940e-20
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 0
Query:  357 KSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNS-YSVKFDDSD 441
            K  T G+AF+RV+ ++W+G  KKG  DN YE TFGQ G+G+KA + L  VRGKDFRHEKTKKKRGSYRGG I  ++ +S KF+  D
Sbjct:   31 KVGTAGKAFQRVKAEEWLG--KKGAIDNRYEATFGQAGWGYKAQQVLGAVRGKDFRHEKTKKKRGSYRGGNIDPHATFSTKFESDD 114          
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A7S1T5X8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T5X8_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 1.670e-19
Identity = 52/86 (60.47%), Postives = 68/86 (79.07%), Query Frame = 0
Query:  357 KSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEI-SMNSYSVKFDDSD 441
            K  T  +AF+RV++++W+G  KKG  DN+Y GTFGQ G+G+KA E L KVRGKDFRHEKTKKKRG+Y+GG+I +M S S+KF+  D
Sbjct:  205 KFGTAAKAFQRVKEEEWLG--KKGAWDNSYVGTFGQDGWGYKAQEVLGKVRGKDFRHEKTKKKRGTYKGGKIDNMGSNSIKFESDD 288          
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A7S3QVY0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QVY0_DUNTE)

HSP 1 Score: 99.8 bits (247), Expect = 2.430e-19
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 0
Query:  357 KSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 441
            K  +  +AF+RV+ ++W+G  KKG  DN+YEGTFGQ G+GFKA + L  VRGKDFRHEKTKKKRG+YRGG I  +S+S KFD  D
Sbjct:  298 KGNSTFKAFQRVKAEEWLG--KKGAWDNSYEGTFGQDGWGFKAQQALGAVRGKDFRHEKTKKKRGTYRGGVIDGSSHSYKFDSDD 380          
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A150FVM7_GONPE (SRP40_C domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FVM7_GONPE)

HSP 1 Score: 99.8 bits (247), Expect = 2.800e-19
Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = 0
Query:  357 KSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNS-YSVKFDDSD 441
            K  T  +AF+RV+ ++W+G  KKG  DN+YEGTFGQGG+GFKA + L  VRGKDFRHEKTKKKRGSYRGG I  ++ +S KF+  D
Sbjct:  310 KPTTAAKAFQRVKAEEWLG--KKGAIDNSYEGTFGQGGWGFKAQQVLGAVRGKDFRHEKTKKKRGSYRGGAIDPHATFSTKFESDD 393          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH06_ECTSI5.320e-6577.23LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JYW0_9PHAE6.230e-5484.62LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3Y1Y8_HETAK8.310e-2266.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D037_9STRA1.120e-2066.67SRP40_C domain-containing protein n=1 Tax=Nannochl... [more]
A0A836CH62_9STRA1.950e-2067.95SRP40, C-terminal domain-containing protein n=1 Ta... [more]
A0A061RD47_9CHLO4.130e-2062.20SRP40_C domain-containing protein n=1 Tax=Tetrasel... [more]
A8JCQ6_CHLRE4.940e-2059.30Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A7S1T5X8_9CHLO1.670e-1960.47Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S3QVY0_DUNTE2.430e-1961.18Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A150FVM7_GONPE2.800e-1961.63SRP40_C domain-containing protein n=1 Tax=Gonium p... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 275..295
IPR006594LIS1 homology motifSMARTSM00667Lishcoord: 13..45
e-value: 0.0028
score: 26.9
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 13..45
score: 9.295
IPR007718Srp40, C-terminalPFAMPF05022SRP40_Ccoord: 365..437
e-value: 1.2E-24
score: 87.0
IPR039191Srp40/Nopp140PANTHERPTHR23216NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1coord: 180..440
coord: 12..308

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1960contigL-elsbetiae_contig1960:11751..16991 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1960.5842.1mRNA_L-elsbetiae_contig1960.5842.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1960 10942..17156 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1960.5842.1 ID=prot_L-elsbetiae_contig1960.5842.1|Name=mRNA_L-elsbetiae_contig1960.5842.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=443bp
MATAAAAAVEDLPASALHPLLHSFLLECGLSTTAAALREETGKSSKKLVK
AQASLGGGCKDLLEIVNLHRKRLAAAAAAEDSEVQEDVAHTKKVKRAKAA
AAAAAAVVASSSSSSSSSSSSSSSSSSSEEEESDEESEQEVEEKKAAANG
KKPKKVAPVAATAATESSSEEESSDDGGEESSSEEEQEEKEEEKRPKKRK
AAEAESSSDEESESDDDDDDEDSDDKAEAKKPPAKKKKTEPAVAAAAADG
DSSSDSSSDSSSDSSDSSDSDSSSSDDETDEEQEAERAIVKASAEKERRR
SSAAAAAAWVPKVLTPSKDPDSNGVANGDGMKTPVKGDGGEANGGGNSTG
KKSTGSKSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKAS
EKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006594LisH
IPR007718Srp40_C
IPR039191Srp40/Nopp140