mRNA_L-elsbetiae_contig1960.5842.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1960.5842.1
Unique NamemRNA_L-elsbetiae_contig1960.5842.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: D7FH06_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH06_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 7.340e-64
Identity = 346/448 (77.23%), Postives = 350/448 (78.12%), Query Frame = 1 
Query:  175 AAAAAVEDLPASALHPLLHSFLLECGLSTTAAALREETGKSSKKLVKAQASLGGGCKDLLEIVNLHRKRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVPKVLTPSK---DPDSNGVANGDGMKTPVKGDGGEANXXXXXXXXXXXXXK------SRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 1491
            AAAAAVEDLPASALHPL+HSFLLECGLS TAAALREETGKSSKKL K QA+LGGGCKDLLEIVN HRKRLA                      XXXXXXXX          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                         WVPK LTP+K     DSNGVANGDGMKTP KG      XXXXXXXXXXX  K      SRTQGEAFKRVQD+QWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct:    5 AAAAAVEDLPASALHPLVHSFLLECGLSATAAALREETGKSSKKLGKQQAALGGGCKDLLEIVNAHRKRLAAEAAKAGGDDVQEDMEHTKKESXXXXXXXXKGKANGVKPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------WVPKALTPNKAGXXGDSNGVANGDGMKTPAKGGXXXXXXXXXXXXXXXXTGKKSTGGKSRTQGEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 411
[Close]
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A6H5JYW0_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW0_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 3.820e-53
Identity = 121/143 (84.62%), Postives = 124/143 (86.71%), Query Frame = 1 
Query: 1087 AWVPKVLTPSKDPD--SNGVANGDGMKTPVKGDGGEANXXXXXXXXXXXXXK------SRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 1491
            AWVPK LTP+K     SNGVANGDGMKTP KG  G   XXXXXXXXXXXX K      SR+QGEAFKRVQD+QWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct:  378 AWVPKDLTPNKAGGGVSNGVANGDGMKTPAKGGQGXXXXXXXXXXXXXXXGKKSTGGKSRSQGEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 520
[Close]
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A7S3Y1Y8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1Y8_HETAK)

HSP 1 Score: 108 bits (269), Expect = 1.120e-22
Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = 1 
Query: 1240 RTQGEAFKRVQDDQWVGGLKK-GFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 1488
            R QGEAFKRV  D W   +K     DN+YEGTFG  GYG KASE L KVRGKDFRHEKTKKKRG+YRGG+I++ S S+KF +SD
Sbjct:  158 RVQGEAFKRVCSDTWGSAIKHDALKDNSYEGTFGGDGYGAKASEVLLKVRGKDFRHEKTKKKRGNYRGGQITLASNSIKFANSD 241
[Close]
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A8JCQ6_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JCQ6_CHLRE)

HSP 1 Score: 99.4 bits (246), Expect = 4.310e-21
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 1 
Query: 1234 KSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNS-YSVKFDDSD 1488
            K  T G+AF+RV+ ++W+G  KKG  DN YE TFGQ G+G+KA + L  VRGKDFRHEKTKKKRGSYRGG I  ++ +S KF+  D
Sbjct:   31 KVGTAGKAFQRVKAEEWLG--KKGAIDNRYEATFGQAGWGYKAQQVLGAVRGKDFRHEKTKKKRGSYRGGNIDPHATFSTKFESDD 114
[Close]
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A061RD47_9CHLO (SRP40_C domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RD47_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 5.280e-21
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1 
Query: 1243 TQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 1488
            T  +AF+RV++++W+G  KKG  DN+Y GTFG  G+G+KA E L KVRGKDFRHEKTKKKRGSYRGG+I + S S KF+  D
Sbjct:  201 TAXKAFQRVREEEWIG--KKGSWDNSYTGTFGAQGWGYKAQEVLGKVRGKDFRHEKTKKKRGSYRGGKIELGSNSFKFESDD 280
[Close]
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A4D9D037_9STRA (SRP40_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D037_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.050e-20
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 1 
Query: 1240 RTQGEAFKRVQDDQWVGGLKKG-FDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFD 1479
            R  GEAF+RV D+ W   +K     DN+Y GTFG GGYG KASEKL  VRGKDFRHEKTKKKRGSYRGG IS+ S+S+K+D
Sbjct:  391 RVSGEAFRRVDDEYWGQQIKDDRLKDNSYAGTFGSGGYGAKASEKLMTVRGKDFRHEKTKKKRGSYRGGTISLESHSIKYD 471
[Close]
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A836CH62_9STRA (SRP40, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH62_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.110e-20
Identity = 53/78 (67.95%), Postives = 61/78 (78.21%), Query Frame = 1 
Query: 1249 GEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDD 1482
            GEAF+RV+D++WV  L  G D N YE TFGQ GYG+KA + L  VRGKDFRHEKTKKKRGSYRGG I+M S S KFD+
Sbjct:  443 GEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 520
[Close]
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A7S1T5X8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T5X8_9CHLO)

HSP 1 Score: 102 bits (255), Expect = 2.080e-20
Identity = 52/86 (60.47%), Postives = 68/86 (79.07%), Query Frame = 1 
Query: 1234 KSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEI-SMNSYSVKFDDSD 1488
            K  T  +AF+RV++++W+G  KKG  DN+Y GTFGQ G+G+KA E L KVRGKDFRHEKTKKKRG+Y+GG+I +M S S+KF+  D
Sbjct:  205 KFGTAAKAFQRVKEEEWLG--KKGAWDNSYVGTFGQDGWGYKAQEVLGKVRGKDFRHEKTKKKRGTYKGGKIDNMGSNSIKFESDD 288
[Close]
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A7S3QVY0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QVY0_DUNTE)

HSP 1 Score: 103 bits (258), Expect = 3.770e-20
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 1 
Query: 1234 KSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 1488
            K  +  +AF+RV+ ++W+G  KKG  DN+YEGTFGQ G+GFKA + L  VRGKDFRHEKTKKKRG+YRGG I  +S+S KFD  D
Sbjct:  298 KGNSTFKAFQRVKAEEWLG--KKGAWDNSYEGTFGQDGWGFKAQQALGAVRGKDFRHEKTKKKRGTYRGGVIDGSSHSYKFDSDD 380
[Close]
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Match: A0A150FVM7_GONPE (SRP40_C domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FVM7_GONPE)

HSP 1 Score: 103 bits (258), Expect = 4.480e-20
Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = 1 
Query: 1234 KSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNS-YSVKFDDSD 1488
            K  T  +AF+RV+ ++W+G  KKG  DN+YEGTFGQGG+GFKA + L  VRGKDFRHEKTKKKRGSYRGG I  ++ +S KF+  D
Sbjct:  310 KPTTAAKAFQRVKAEEWLG--KKGAIDNSYEGTFGQGGWGFKAQQVLGAVRGKDFRHEKTKKKRGSYRGGAIDPHATFSTKFESDD 393
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1960.5842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH06_ECTSI7.340e-6477.23LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JYW0_9PHAE3.820e-5384.62LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3Y1Y8_HETAK1.120e-2266.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A8JCQ6_CHLRE4.310e-2159.30Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A061RD47_9CHLO5.280e-2162.20SRP40_C domain-containing protein n=1 Tax=Tetrasel... [more]
A0A4D9D037_9STRA1.050e-2066.67SRP40_C domain-containing protein n=1 Tax=Nannochl... [more]
A0A836CH62_9STRA1.110e-2067.95SRP40, C-terminal domain-containing protein n=1 Ta... [more]
A0A7S1T5X8_9CHLO2.080e-2060.47Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S3QVY0_DUNTE3.770e-2061.18Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A150FVM7_GONPE4.480e-2061.63SRP40_C domain-containing protein n=1 Tax=Gonium p... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1960contigL-elsbetiae_contig1960:10942..17156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.5
Seed ortholog evalue7.7e-58
Seed eggNOG ortholog2880.D7FH06
Preferred nameSRP40
KEGG koko:K10771,ko:K11294
KEGG Pathwayko03410,ko05130,map03410,map05130
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016888,GO:0016893,GO:0016895,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046907,GO:0050896,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0052720,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360
EggNOG free text desc.RNA polymerase I core binding
EggNOG OGsKOG2992@1,KOG2992@2759
EC4.2.99.18
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03036,ko03400
Ec32 ortholog descriptionSRP40, C-terminal
Ec32 orthologEc-26_003010.1
Exons7
Model size2303
Cds size1329
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.4393077-UTR-L-elsbetiae_contig1960:10941..117501622815813.4393077-UTR-L-elsbetiae_contig1960:10941..11750Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1960 10942..11750 -
1691683119.6301196-UTR-L-elsbetiae_contig1960:10941..117501691683119.6301196-UTR-L-elsbetiae_contig1960:10941..11750Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1960 10942..11750 -
1622815813.532761-UTR-L-elsbetiae_contig1960:16991..171561622815813.532761-UTR-L-elsbetiae_contig1960:16991..17156Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1960 16992..17156 -
1691683119.7113373-UTR-L-elsbetiae_contig1960:16991..171561691683119.7113373-UTR-L-elsbetiae_contig1960:16991..17156Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1960 16992..17156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.449156-CDS-L-elsbetiae_contig1960:11750..119181622815813.449156-CDS-L-elsbetiae_contig1960:11750..11918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1960 11751..11918 -
1691683119.6411805-CDS-L-elsbetiae_contig1960:11750..119181691683119.6411805-CDS-L-elsbetiae_contig1960:11750..11918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1960 11751..11918 -
1622815813.4600337-CDS-L-elsbetiae_contig1960:12822..129731622815813.4600337-CDS-L-elsbetiae_contig1960:12822..12973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1960 12823..12973 -
1691683119.6493614-CDS-L-elsbetiae_contig1960:12822..129731691683119.6493614-CDS-L-elsbetiae_contig1960:12822..12973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1960 12823..12973 -
1622815813.4693751-CDS-L-elsbetiae_contig1960:13293..134541622815813.4693751-CDS-L-elsbetiae_contig1960:13293..13454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1960 13294..13454 -
1691683119.6582892-CDS-L-elsbetiae_contig1960:13293..134541691683119.6582892-CDS-L-elsbetiae_contig1960:13293..13454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1960 13294..13454 -
1622815813.4813917-CDS-L-elsbetiae_contig1960:14366..145011622815813.4813917-CDS-L-elsbetiae_contig1960:14366..14501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1960 14367..14501 -
1691683119.66769-CDS-L-elsbetiae_contig1960:14366..145011691683119.66769-CDS-L-elsbetiae_contig1960:14366..14501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1960 14367..14501 -
1622815813.4919593-CDS-L-elsbetiae_contig1960:15047..156051622815813.4919593-CDS-L-elsbetiae_contig1960:15047..15605Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1960 15048..15605 -
1691683119.6774209-CDS-L-elsbetiae_contig1960:15047..156051691683119.6774209-CDS-L-elsbetiae_contig1960:15047..15605Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1960 15048..15605 -
1622815813.5075667-CDS-L-elsbetiae_contig1960:16129..162071622815813.5075667-CDS-L-elsbetiae_contig1960:16129..16207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1960 16130..16207 -
1691683119.6883008-CDS-L-elsbetiae_contig1960:16129..162071691683119.6883008-CDS-L-elsbetiae_contig1960:16129..16207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1960 16130..16207 -
1622815813.5188553-CDS-L-elsbetiae_contig1960:16913..169911622815813.5188553-CDS-L-elsbetiae_contig1960:16913..16991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1960 16914..16991 -
1691683119.6996431-CDS-L-elsbetiae_contig1960:16913..169911691683119.6996431-CDS-L-elsbetiae_contig1960:16913..16991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1960 16914..16991 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1960.5842.1prot_L-elsbetiae_contig1960.5842.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1960 11751..16991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1960.5842.1

>prot_L-elsbetiae_contig1960.5842.1 ID=prot_L-elsbetiae_contig1960.5842.1|Name=mRNA_L-elsbetiae_contig1960.5842.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=443bp
MATAAAAAVEDLPASALHPLLHSFLLECGLSTTAAALREETGKSSKKLVK
AQASLGGGCKDLLEIVNLHRKRLAAAAAAEDSEVQEDVAHTKKVKRAKAA
AAAAAAVVASSSSSSSSSSSSSSSSSSSEEEESDEESEQEVEEKKAAANG
KKPKKVAPVAATAATESSSEEESSDDGGEESSSEEEQEEKEEEKRPKKRK
AAEAESSSDEESESDDDDDDEDSDDKAEAKKPPAKKKKTEPAVAAAAADG
DSSSDSSSDSSSDSSDSSDSDSSSSDDETDEEQEAERAIVKASAEKERRR
SSAAAAAAWVPKVLTPSKDPDSNGVANGDGMKTPVKGDGGEANGGGNSTG
KKSTGSKSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKAS
EKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG*
back to top

mRNA from alignment at L-elsbetiae_contig1960:10942..17156-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1960.5842.1 ID=mRNA_L-elsbetiae_contig1960.5842.1|Name=mRNA_L-elsbetiae_contig1960.5842.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6215bp|location=Sequence derived from alignment at L-elsbetiae_contig1960:10942..17156- (Laminarionema elsbetiae ELsaHSoW15)
CGACCTGGTTCGTCACCTTGCCTCTCTCCCTGGCCGTGAGGTAGCGAAGC
CATCGGACGTTTGAGCCAGAGCTTGAAAGAAAGGTCTAGTTGGGTCTAGG
AGTGATTGATACTTACTGCCTCGGGCGGACCCAGCGACGCCAACACAGCA
GCCGACGCGGAAGCCATGGCCACAGCAGCAGCGGCAGCAGTCGAGGACCT
CCCGGCGAGCGCTCTGCACCCTCTGCTGCACTCCTTTCTCTTGGTGAGAG
AGCCCCTAGCTTGATGAGTGGAGGCCGGGCCGCTATGATCATTGCGGCTG
CTGGCGTGTTCTCTTGGTAGCCTCAGCCATCGTTTTCTCCAGTAGCTGCG
AGCGGTTGGCAGCCGCGCAGTCTGAAACGAACACACGACGGTACCTATAC
AAGTCTAGTTGAGATGTACATCTGCGAACTCACGCTGTGTAGTGCGGCCT
ACTTCTAGGGTGTGCTAGTGTGCCAGCCCGGCTCGTGCGATAGAGGCCTC
CTTTTCTCGGCGCGATCAAGTGCCGGTGCAGGTCCTCTCTTTCTTTTGGC
GAGTTGGTGGTGGTGGCACACAAAATCGGCGCACACATGATCAAGTTGCA
ACATACATAGTCTACATGGACTTATGAAACAATCAAAATCCCTTGCTTGC
GGTTTGCAACGAATTGTGCACGGAAGCAGAGTAGGGCTGGAAACTCGGTA
TAGGTACGCACTTCCTTCACGTGTTGTTCTGACTGTAGTCTAAATTGCGA
CGACCTTCAGGCCCTAAAATCCGTACGCGCTGGCTTCAGGGAAGCGGCCC
GCATGTACTGTAGATAAATAACTCCTACATGGTCTACAGAGCAGCCGCGC
AGCTACCAATTGTGACAAAGGCAGCACATCTAAATGCGAAGTCGGGTTAT
ATGCACCACTCCACCAAGCTGAACCATTTTCATTCGTGTCGTTTGTCAGG
AATGTGGGCTTTCAACCACGGCGGCAGCTCTGCGCGAGGAGACGGGCAAG
AGCTCGAAAAAGCTCGTCAAAGCGCAGGTATGTAGACTCTTTATGTATGT
CCGGGTGTGTTGTTGCGTCGTTACACCTGTCGGCGGCGGCAAAACTGGCG
CACTCGGTCACGCCTCCCAAGGCTTGCTTGTGCCGGTCATGTACATGTAC
ATCCTTCCTGTTTTTGCTTCTGGCATGGACACATATACGTTTGCATCGGC
ATTCTCTCTTCTTTGCATGGCCACACGGCAACACGCCGCGGTCGGTCGTG
TGGTTGCTGTGTGGTGGCGGGTGAAACTGCATGGTGCCGCTCTTCTAAGT
TGCCACGCACAAACGATGAAAACATGTGCTGCTTGAGTGCGAGCGTCTCG
TGTGTTGCCCCGACACTTCCAACGGCTATTGTCGCATCTTGCGATGTATC
TCTGCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATTAGCAT
TTTCTTGAAAGCAGTACTTTCATGCGTTGCGGCCCCCCCCGCCCACTGTT
ACGTGCGTCGTCTGCACTTCATTTGCAAATACTTGCACGCACCACACACA
GGCATCGCTTGGAGGAGGCTGTAAAGATCTTTTGGAGATCGTAAATCTCC
ACCGCAAGCGTCTCGCGGCGGCGGCGGCGGCGGAAGATAGCGAAGTACAA
GAGGACGTGGCACACACGAAGAAGGTAAAGAGGGCCAAGGCGGCTGCCGC
GGCTGCGGCGGCGGTGGTGGCTTCTTCATCGTCATCGTCCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAAGAAGAGGAGAGTGACGAA
GAGAGTGAGCAAGAAGTCGAGGAGAAAAAGGCTGCGGCGAACGGCAAAAA
GCCCAAGAAGGTGGCACCGGTGGCCGCGACGGCAGCGACCGAGTCTAGCA
GCGAGGAGGAAAGTAGTGACGATGGTGGCGAGGAATCTTCGTCGGAGGAG
GAACAAGAGGAGAAAGAGGAAGAAAAGCGCCCGAAAAAGAGGAAGGCGGC
GGAGGCGGAATCTTCTTCCGACGAGGAAAGCGAGAGCGACGACGACGACG
ACGACGAGGATAGCGATGACAAAGCCGAGGCGAAGAAGCCTCCCGCTAAA
AAGAAGAAGGTGGGATACGGCCTTCCCGGTTTGTTTGCTCTCGCGTCCGG
TATGCCGGCTGCCCGGGCAGCACATCGGTATCACATGATCCCGGCGAGCC
CTTCCCAAGAGAGAGAGAGAGTCGTTGTGTTTAGCACACTCGAAGCGAAA
AACCTCGGAGCTCGTATGCGTGCGTAGGTATGGTTACTATGGTTACAGCA
GAGCTGTTGTTTTGTCGACAAGCAACACCCTCTCTGCCCTGCAAGCAATT
AGAGAGTCTTCCCCCTCTCTTTTGGGTCCATTGGGACTTACGGTACACTC
AAGCGCTTGGAAGAAGTTGTCGTTTTGTGGTTTGTACACGTACAAAGGGG
GCCACAAAGTCGATCACCCGCCACCATTCCCGCCCAAGAACAACCTTCAG
TTATCTACTGTTGCGGCTGGTTGCTGGTTGTTTGTTGTTGCTGCTCGATG
GTCACGAGACCAATCGTATCGGTTCATCGGTTCCCTGGAAAACGCCCTAG
GTTGCTCCAACCTATAAAATTAACCCCCTTTTTCTTCTTGCTGATGTTGT
GGCAGACGGAACCCGCTGTCGCTGCTGCTGCAGCCGATGGTGACAGCAGC
AGTGACAGCAGCAGCGACAGCAGCAGCGATAGCAGTGACAGCAGCGATAG
CGACTCTTCCTCCTCGGACGATGAGACGGACGAAGAACAGGTGTGTGTGG
GTGTGTGTTGTATGCATGGCCTGTGCATCTGTCTCCCTGGCTTTGTTGTC
CATCTGTCGTTTGTTATAATGTTTTTTCGTCTCGCTGTCTTGTATAGTCG
AAGAGTCTCGCAGGGCTTTTTTGCCTTTTTTCCAAGTCTTGTTCACCTTG
TCCTGTTGTCGATTTACTCTGTTTAAAAGAGGCTTGCTAACGGGTACACC
TTCTTTTCCTCTGAACGCCCAAGTCCCATACCAAACAAAGTGTCGGTAAA
CCCTGGCGTAACCCCAGCGACATGAGGGAGTAAGTACAATCGCACCAATA
TGGCTCTGGGTTGGTCCTTCATCCGCCGTTCGTACGTTGTCTCTTGTATG
CATGTGAGCGTTTCACCCTTTTTTTGTTCATGCTGGCCGCAAGGATGAGA
CCGGAAACGTCTTTTGCCCGATCATCGGCACCGACTTTTTTCGTCTTTTT
TTCTTTTCTTCGTTTTGTGACGAGACGAACACTCGACACAACACCGAAAA
TGACCTTGCTATCAAAAGCGGTTGAGCGTTGTTGCTATTAATGGGTTGAT
TGCTGTCTGCGGTAGTTGTGATTAGTACGGCTGGAGGCCGTAGACGCTAC
GGCCGCAACGGCGTCCTCCCTCCCTCAAGATCGCACAAAATACTAGATAT
ACACACGGTTGGCGACCCCCCCCCCCCCCCTTTTTGAGGGGGGCCCGGGG
AAGGCGGGCTCGCAAAACCCACATACTTCGTATATAGATACTTCTACGTT
ATACCACGATGCATGCATTTGCACCTCTCAAATATCCCCGTGTCTCTGTC
GTTTACTAAATACCTGCTGCTTGGTATCCAACTCCGCCGCAAGCAAACAT
CTCATTCATTGTTAATTGTCCTTCTCTTCTTCTCTCTTCTTCCCGCTTTC
AGGAGGCGGAAAGAGCGATCGTGAAAGCGTCTGCGGAGAAGGAGAGGAGG
CGATCCTCGGCGGCCGCGGCGGCGGCGTGGGTTCCCAAGGTTTTGACGCC
CAGCAAAGACCCGGATTCCAACGGCGTGGCAAACGGCGACGGCATGAAGA
CGCCGGTCAAGGGGTGAGCATGGGATTGGGAGCTCATGACACCCACGATG
GGAGGGTTGAGATCGATACCAACAACAGAGGCCGCCGGCAGTGCGAACAA
AATGTATGAGTGGTATTGCGGTGGGTACCAGCACTTCGTGCAGAACTGGA
AACGTTAAACTTTTAGTTTTTTATTGCCAGTGCCTCATATGGTTCCGGTG
CCGTTCCCCGCCTCGATATCGAATGCCTTTATTCACGCTGTCGGCCGTTT
TGGCCGATCTGGATATTAATTTTAACTGGTTCGGCGACCCCCCGCTTGCC
GATCGCTTGCCCCCCCCCCTCCCCCCAACACAGCGACGGTGGAGAGGCCA
ATGGGGGCGGGAACAGCACCGGCAAGAAATCGACGGGGAGCAAGTCGAGG
ACGCAGGGGGAAGCTTTCAAGAGGGTCCAGGACGACCAGTGGGTCGGGGG
GCTGAAGAAAGGTTTCGATGACAACACCTACGAGGTGAGCGTGTGCTGCG
CATGCTTGTTTTTGTTGTAGTTCGCTCTGCCGCCGGTCTATTGACAGGCT
GACCACCAAGAGTAGAGACAAATGAAGTTTGGGCGTTTGTCCGCGTATAT
ATTTTTTGTCTTGTAGTTGTCGTCGACCGCGCTCAACCGCTGGGCTCTTT
AGGCCAACGCAACAACAGTAGCAGACGACTACATGGCGCATTTGTTTTGT
ACGGAACAGATAAAACCATGCATAGCCCATGCGTGGGTAAGTTCGTGCAC
GCGCCATGGGGAGCATACACCATGCTATGTTTTTTTTTCGATCTGGTGTG
TTGCTTTTCGAAAATAAATCAGCAAATCAAAGAAAGAAACCTCGCCACAA
GAGACGCTTGTTTCAGGCGTGGCCGTCTGTGTCGATTTTTGCCGCATCTT
GCCCTCTGGGGCACAGCACTGAGGGCGTTGGGTGGTACCCCTTTTCTCCC
TCCGCCCCCCCCGGCGGCCCGCCTTCCGATCGTTTAGAACGTTTCCGCTC
CGCCTCTCGTGTCCTTCTGCTGCCCCCCGTCATCGGAATTTATCGTATCC
CCTGCTGAGTTCCCTACACACCCGTGCCCCTTGTTACCGCCCTTTTGGTA
CGACGGCGCGCGTTGCGGGCAACAAACGGCGCGGCGTCAGTGCCACGCGC
ATGTCTTACGCCCCTTGTGCTACTGCTTGGAATTTTCGACGAGCATCGAA
CTTGCTTTTTATCTTTCGTTTCTATCTCCAATCCCGTGGTGCGTCCACGA
CTCGACCGACTACAAAATCAGCTTGCCCGGAAGTAGTGCCCCCCCCCCCC
CCCCCCCCCGCCCGCACCCTCCCCCAGCGCTCTTTCTAAATCGTCTCAGT
CTCTCTCTCCTCCACCCCTCCGCGGCCTGTCCTCACAGGGCACGTTTGGT
CAGGGGGGGTACGGGTTCAAGGCTAGCGAGAAGCTGTCGAAGGTGCGAGG
GAAGGATTTCCGGCACGAGAAGACCAAGAAGAAGCGCGGCAGCTACCGGG
GGGGGGAGATCTCGATGAACAGCTACTCGGTCAAGTTCGACGACAGCGAT
GGGTGAAGACTATGCTGCTGCTGATGATGATGATGATGATGATGATGATG
ATGATGAAAGAGCGAGCGAGGATGGTGCGACCACCGGAAGAGCCAGCCGT
GTGCTAAAGGGGGCTTTGTCTCTTTTCTCTCTCTCTTTTTTCTTGTTCTG
TGTGTGCAGCCGAGAGATCGCGAGGGAGTTTTCAATTGAAAGAGTTGTCA
CGCATGCTTCCAAGGAGGAGGACTTGTCGCAGAGCGTTACTTTCTTCCGG
TAGTACGCCTCACGGGCGCGTTCGAGGCGACACAATGGAGCGGGGTATCT
GTGCCTTTTCATTTGGGTTTTGAGAGTGATCAATGGTTTCGCATGTGCAA
GATACGAATGCTTGCATAAATAAAGTCAACACCACGGATACAGCCAGCGT
TTTGCCGATCGATGGAGGCGACAGACAAATTGGACGGGGTTGTTGGAGGA
ATGGCGACATTTCGCTTAGTCGTGCTCAGACTTAACACCTGTTTTGTGGT
AGTATGGGTGTGCTAAGTAAGGCGCCCTTAAGGCAGCCGCCTTGATGATC
GATCCAGTTTAGCCTGGCAAGATGTACGGGGTTCTTCCACGTGCACCACC
GTCGAAACGCTCGGTCCTCGCGCGGAGCGGGTTTGGCGCTGGGGGTGTTG
TGTTGAAGTATTGAAGAAGTGCTTGTTTGTATCTCACCAGCGAAGCTGCA
GGTCTCGACGCATGCATCGCTCCGGGGACCAGGACCACACGCGACATCTG
ACACACATACATATGTACATACGTGATACAGCCCATGCCGATTTGTGAAC
TTAAAAGGCCTAGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1960:10942..17156-

>mRNA_L-elsbetiae_contig1960.5842.1 ID=mRNA_L-elsbetiae_contig1960.5842.1|Name=mRNA_L-elsbetiae_contig1960.5842.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2658bp|location=Sequence derived from alignment at L-elsbetiae_contig1960:10942..17156- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCACAGCAGCAGCGGCAGCAGTCGAGGACCTCCCGGCGAGCGCTCT
GCACCCTCTGCTGCACTCCTTTCTCTTGATGGCCACAGCAGCAGCGGCAG
CAGTCGAGGACCTCCCGGCGAGCGCTCTGCACCCTCTGCTGCACTCCTTT
CTCTTGGAATGTGGGCTTTCAACCACGGCGGCAGCTCTGCGCGAGGAGAC
GGGCAAGAGCTCGAAAAAGCTCGTCAAAGCGCAGGAATGTGGGCTTTCAA
CCACGGCGGCAGCTCTGCGCGAGGAGACGGGCAAGAGCTCGAAAAAGCTC
GTCAAAGCGCAGGCATCGCTTGGAGGAGGCTGTAAAGATCTTTTGGAGAT
CGTAAATCTCCACCGCAAGCGTCTCGCGGCGGCGGCGGCGGCGGAAGATA
GCGAAGTACAAGAGGACGTGGCACACACGAAGAAGGTAAAGAGGGCCAAG
GCGGCTGCCGCGGCTGCGGCGGCGGTGGTGGCTTCTTCATCGTCATCGTC
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAAGAAGAGG
AGAGTGACGAAGAGAGTGAGCAAGAAGTCGAGGAGAAAAAGGCTGCGGCG
AACGGCAAAAAGCCCAAGAAGGTGGCACCGGTGGCCGCGACGGCAGCGAC
CGAGTCTAGCAGCGAGGAGGAAAGTAGTGACGATGGTGGCGAGGAATCTT
CGTCGGAGGAGGAACAAGAGGAGAAAGAGGAAGAAAAGCGCCCGAAAAAG
AGGAAGGCGGCGGAGGCGGAATCTTCTTCCGACGAGGAAAGCGAGAGCGA
CGACGACGACGACGACGAGGATAGCGATGACAAAGCCGAGGCGAAGAAGC
CTCCCGCTAAAAAGAAGAAGGCATCGCTTGGAGGAGGCTGTAAAGATCTT
TTGGAGATCGTAAATCTCCACCGCAAGCGTCTCGCGGCGGCGGCGGCGGC
GGAAGATAGCGAAGTACAAGAGGACGTGGCACACACGAAGAAGGTAAAGA
GGGCCAAGGCGGCTGCCGCGGCTGCGGCGGCGGTGGTGGCTTCTTCATCG
TCATCGTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGA
AGAAGAGGAGAGTGACGAAGAGAGTGAGCAAGAAGTCGAGGAGAAAAAGG
CTGCGGCGAACGGCAAAAAGCCCAAGAAGGTGGCACCGGTGGCCGCGACG
GCAGCGACCGAGTCTAGCAGCGAGGAGGAAAGTAGTGACGATGGTGGCGA
GGAATCTTCGTCGGAGGAGGAACAAGAGGAGAAAGAGGAAGAAAAGCGCC
CGAAAAAGAGGAAGGCGGCGGAGGCGGAATCTTCTTCCGACGAGGAAAGC
GAGAGCGACGACGACGACGACGACGAGGATAGCGATGACAAAGCCGAGGC
GAAGAAGCCTCCCGCTAAAAAGAAGAAGACGGAACCCGCTGTCGCTGCTG
CTGCAGCCGATGGTGACAGCAGCAGTGACAGCAGCAGCGACAGCAGCAGC
GATAGCAGTGACAGCAGCGATAGCGACTCTTCCTCCTCGGACGATGAGAC
GGACGAAGAACAGACGGAACCCGCTGTCGCTGCTGCTGCAGCCGATGGTG
ACAGCAGCAGTGACAGCAGCAGCGACAGCAGCAGCGATAGCAGTGACAGC
AGCGATAGCGACTCTTCCTCCTCGGACGATGAGACGGACGAAGAACAGGA
GGCGGAAAGAGCGATCGTGAAAGCGTCTGCGGAGAAGGAGAGGAGGCGAT
CCTCGGCGGCCGCGGCGGCGGCGTGGGTTCCCAAGGTTTTGACGCCCAGC
AAAGACCCGGATTCCAACGGCGTGGCAAACGGCGACGGCATGAAGACGCC
GGTCAAGGGGAGGCGGAAAGAGCGATCGTGAAAGCGTCTGCGGAGAAGGA
GAGGAGGCGATCCTCGGCGGCCGCGGCGGCGGCGTGGGTTCCCAAGGTTT
TGACGCCCAGCAAAGACCCGGATTCCAACGGCGTGGCAAACGGCGACGGC
ATGAAGACGCCGGTCAAGGGCGACGGTGGAGAGGCCAATGGGGGCGGGAA
CAGCACCGGCAAGAAATCGACGGGGAGCAAGTCGAGGACGCAGGGGGAAG
CTTTCAAGAGGGTCCAGGACGACCAGTGGGTCGGGGGGCTGAAGAAAGGT
TTCGATGACAACACCTACGAGCGACGGTGGAGAGGCCAATGGGGGCGGGA
ACAGCACCGGCAAGAAATCGACGGGGAGCAAGTCGAGGACGCAGGGGGAA
GCTTTCAAGAGGGTCCAGGACGACCAGTGGGTCGGGGGGCTGAAGAAAGG
TTTCGATGACAACACCTACGAGGGCACGTTTGGTCAGGGGGGGTACGGGT
TCAAGGCTAGCGAGAAGCTGTCGAAGGTGCGAGGGAAGGATTTCCGGCAC
GAGAAGACCAAGAAGAAGCGCGGCAGCTACCGGGGGGGGGAGATCTCGAT
GAACAGCTACTCGGTCAAGTTCGACGACAGCGATGGGTGAGGCACGTTTG
GTCAGGGGGGGTACGGGTTCAAGGCTAGCGAGAAGCTGTCGAAGGTGCGA
GGGAAGGATTTCCGGCACGAGAAGACCAAGAAGAAGCGCGGCAGCTACCG
GGGGGGGGAGATCTCGATGAACAGCTACTCGGTCAAGTTCGACGACAGCG
ATGGGTGA
back to top