prot_L-elsbetiae_contig196.5840.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig196.5840.1
Unique Name	prot_L-elsbetiae_contig196.5840.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	237

Homology

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BLAST of mRNA_L-elsbetiae_contig196.5840.1 vs. uniprot
Match: A0A6H5JS12_9PHAE (EH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS12_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 7.090e-29
Identity = 124/260 (47.69%), Postives = 137/260 (52.69%), Query Frame = 0

Query:    1 MCDDSCDQGGGGGTRRCYRHNRYSLREFRRSTR-------PGATTAAAGEDGRSVHQALCRGIVAGVLFGXXXXXXXXXXXXXXXSIVSRRNRDRGDDGVHVVSCVSNAAAAXXXXXXXXXXXXXXXRAGVS-YGG-VTTREEAMLATGRAINATTTLTCAAALGR---------ADQGATAGDSGSGEEGVPLSLPSAHPVASLVATPCTSSS-----------------SNVAFVVPIHCTDVSTGGXXXXXGDDGRA 225
            MCD SC QGG GGTRRC RH R S    RR+T             AAAGE+G SVHQALC GIVAGVL  XXXXXXXXXXXX   SIVSRR RDRGDD V VVS    AAAA               R GV+ YG  V TRE+AMLATGRAI+   T TCA              AD  A+AG++        L LPSA PV++ VA PCTSSS                 +NV F VP+ C +   G      G    A
Sbjct:    1 MCDVSCAQGGEGGTRRCNRH-RQSTGSERRTTHIRRLDAEADVAAAAAGEEGGSVHQALCGGIVAGVLXXXXXXXXXXXXXXVGASIVSRRGRDRGDDDVRVVSYSPAAAAAPAAG-----------RGGVAGYGDMVMTREQAMLATGRAIS---TATCAXXXXXXXXXXXXXXADGVASAGEA--------LLLPSARPVSNPVAIPCTSSSIRTARRLTAVTATPAHANNVVFGVPMSCGETGGGANNDTAGGPATA 237

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig196.5840.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig196.5840.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5JS12_9PHAE	7.090e-29	47.69	EH domain-containing protein n=1 Tax=Ectocarpus sp...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..55
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 82..236
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 56..81
None	No IPR available	TMHMM	TMhelix		coord: 56..78

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig196	contig	L-elsbetiae_contig196:46703..50772 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig196.5840.1	mRNA_L-elsbetiae_contig196.5840.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig196 46696..50938 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig196.5840.1 ID=prot_L-elsbetiae_contig196.5840.1|Name=mRNA_L-elsbetiae_contig196.5840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=237bp
MCDDSCDQGGGGGTRRCYRHNRYSLREFRRSTRPGATTAAAGEDGRSVHQ
ALCRGIVAGVLFGGVLGGVVVGAAAVGASIVSRRNRDRGDDGVHVVSCVS
NAAAAAAAAAAAAGRAAAAGRAGVSYGGVTTREEAMLATGRAINATTTLT
CAAALGRADQGATAGDSGSGEEGVPLSLPSAHPVASLVATPCTSSSSNVA
FVVPIHCTDVSTGGGGGGSGDDGRAQPPRFDRARRY*