mRNA_L-elsbetiae_contig196.5840.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig196.5840.1
Unique NamemRNA_L-elsbetiae_contig196.5840.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig196.5840.1 vs. uniprot
Match: A0A6H5JS12_9PHAE (EH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS12_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 4.560e-28
Identity = 124/249 (49.80%), Postives = 137/249 (55.02%), Query Frame = 2 
Query:    8 MCDDSCDQGGGGGTRRCYRHNRYSLREFRRSTR-------PGATTAAAGEDGRSVHQALCRGIVAGVLFGXXXXXXXXXXXXXXXSIVSRRNRDRGDDGVHVVSCVSNAAAAXXXXXXXXXXXXXXXRAGVS-YGG-VTTREEAMLATGRAINATTTLTCAAALGR---------ADQGATAGDSGSGEEGVPLSLPSAHPVASLVATPCTSSS-----------------SNVAFVVPIHCTDVSTGG 649
            MCD SC QGG GGTRRC RH R S    RR+T             AAAGE+G SVHQALC GIVAGVL  XXXXXXXXXXXX   SIVSRR RDRGDD V VVS    AAAA               R GV+ YG  V TRE+AMLATGRAI+   T TCA              AD  A+AG++        L LPSA PV++ VA PCTSSS                 +NV F VP+ C +  TGG
Sbjct:    1 MCDVSCAQGGEGGTRRCNRH-RQSTGSERRTTHIRRLDAEADVAAAAAGEEGGSVHQALCGGIVAGVLXXXXXXXXXXXXXXVGASIVSRRGRDRGDDDVRVVSYSPAAAAAPAAG-----------RGGVAGYGDMVMTREQAMLATGRAIS---TATCAXXXXXXXXXXXXXXADGVASAGEA--------LLLPSARPVSNPVAIPCTSSSIRTARRLTAVTATPAHANNVVFGVPMSCGE--TGG 224
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig196.5840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JS12_9PHAE4.560e-2849.80EH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig196contigL-elsbetiae_contig196:46696..50938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons5
Model size884
Cds size711
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815812.7466536-UTR-L-elsbetiae_contig196:46695..467021622815812.7466536-UTR-L-elsbetiae_contig196:46695..46702Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig196 46696..46702 +
1691683119.0805993-UTR-L-elsbetiae_contig196:46695..467021691683119.0805993-UTR-L-elsbetiae_contig196:46695..46702Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig196 46696..46702 +
1622815812.8221262-UTR-L-elsbetiae_contig196:50772..509381622815812.8221262-UTR-L-elsbetiae_contig196:50772..50938Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig196 50773..50938 +
1691683119.1490202-UTR-L-elsbetiae_contig196:50772..509381691683119.1490202-UTR-L-elsbetiae_contig196:50772..50938Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig196 50773..50938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815812.7595892-CDS-L-elsbetiae_contig196:46702..468731622815812.7595892-CDS-L-elsbetiae_contig196:46702..46873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 46703..46873 +
1691683119.091448-CDS-L-elsbetiae_contig196:46702..468731691683119.091448-CDS-L-elsbetiae_contig196:46702..46873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 46703..46873 +
1622815812.7712972-CDS-L-elsbetiae_contig196:49221..494521622815812.7712972-CDS-L-elsbetiae_contig196:49221..49452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 49222..49452 +
1691683119.101067-CDS-L-elsbetiae_contig196:49221..494521691683119.101067-CDS-L-elsbetiae_contig196:49221..49452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 49222..49452 +
1622815812.782825-CDS-L-elsbetiae_contig196:49704..498861622815812.782825-CDS-L-elsbetiae_contig196:49704..49886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 49705..49886 +
1691683119.110721-CDS-L-elsbetiae_contig196:49704..498861691683119.110721-CDS-L-elsbetiae_contig196:49704..49886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 49705..49886 +
1622815812.7939868-CDS-L-elsbetiae_contig196:50544..505961622815812.7939868-CDS-L-elsbetiae_contig196:50544..50596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 50545..50596 +
1691683119.1293666-CDS-L-elsbetiae_contig196:50544..505961691683119.1293666-CDS-L-elsbetiae_contig196:50544..50596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 50545..50596 +
1622815812.8093393-CDS-L-elsbetiae_contig196:50697..507721622815812.8093393-CDS-L-elsbetiae_contig196:50697..50772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 50698..50772 +
1691683119.138216-CDS-L-elsbetiae_contig196:50697..507721691683119.138216-CDS-L-elsbetiae_contig196:50697..50772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig196 50698..50772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig196.5840.1prot_L-elsbetiae_contig196.5840.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig196 46703..50772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig196.5840.1

>prot_L-elsbetiae_contig196.5840.1 ID=prot_L-elsbetiae_contig196.5840.1|Name=mRNA_L-elsbetiae_contig196.5840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=237bp
MCDDSCDQGGGGGTRRCYRHNRYSLREFRRSTRPGATTAAAGEDGRSVHQ
ALCRGIVAGVLFGGVLGGVVVGAAAVGASIVSRRNRDRGDDGVHVVSCVS
NAAAAAAAAAAAAGRAAAAGRAGVSYGGVTTREEAMLATGRAINATTTLT
CAAALGRADQGATAGDSGSGEEGVPLSLPSAHPVASLVATPCTSSSSNVA
FVVPIHCTDVSTGGGGGGSGDDGRAQPPRFDRARRY*
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mRNA from alignment at L-elsbetiae_contig196:46696..50938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig196.5840.1 ID=mRNA_L-elsbetiae_contig196.5840.1|Name=mRNA_L-elsbetiae_contig196.5840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4243bp|location=Sequence derived from alignment at L-elsbetiae_contig196:46696..50938+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCACCATGTGTGACGACTCTTGTGATCAGGGAGGGGGGGGGGGGACAA
GGCGATGCTATCGACATAACAGGTACAGCTTGAGGGAATTTCGTCGATCC
ACGCGACCTGGTGCTACCACTGCTGCCGCTGGAGAAGATGGCAGGAGCGT
ACACCAAGCGCTGTGCCGCGGGATCGTGGTGAGTATGTCGCCAATTTTTC
CTCTGGGGGATAAGGTCTGTCTGGGTGCTGCCATGCGTTGAACAACCTTT
GCTTCGTTGTCAAAAGCTCGACCCGACCGCATCCATGTTCAACGTCAACA
ACCTGCTGCGGCCGACGGTGTGTGCTCTCCAGGTGCTCTCCACCGCAGTC
GTGGATTATTTGATCGAGGAGACTTGATATGCTCCCCTCGTGAGACATTC
CGGTGTTAGGCTTTAACTTTTCCCCTCATTGTTCTGCAATCAATATTTTT
TCTTTCGCCACCTCCCACGACCACACTCGACCCCCAAACAACCGAATTCG
TTTGAAGCGTTTGAAAATATATCCACGTGAGAGAGGCCAAGGAGACATGA
AAAGGGGGCGTATCTTTCGCATCCATTTCCTGTGAGACGCACGCGAACGC
GCGCCACCGCTCACGGTGTGGGTTGGCCGTTTCAACGAGGCCAGTTACCC
GTTCCATACCATATGTTCCACAAGCACGTGCTCATCCAAAAAAATAGTAC
CGGGGATTCGAAATATGTAGGATTCCATTCGCTACAAGTTCTTGAAAGAT
AGGCAGATAAAGAACCTAACCCACATTGGACACGGGACTCCCGTGGGATT
TTTCGGTATTCCATATAGTGACGTAATATTGGGCCGGCCGAGTAGAAAAA
CGAAAACACCTAAAATATTAGAAGTTCTTCATGAAAAAAGGAAAGCGCCG
TTATTTATGTATTTACGTAAATAATATCTACACGCACGGGGAACACGGCT
TGTATGTAACTTGTAACAAATACATGGCTAGGAGTACATACATACTCCTA
TATAAACGAGGTGCCACCTCCTCCTGGCACCCACGCATCACAGGTAAGTA
GGAGTATGTACTACTTCTTCATATGTAGGTGCTGCCGTCGATACAACGAG
CGGTGGGTGCTAAGGATGGTACGTTATTTTTTTTGCGAGCGGAGAGACAG
ACGATAACTACTCAGCACTACCCCTTCATTCGAAGGCATCAACCCACAGC
GCTACTCGTGGAAGCTAGGTCTCATTATATAGATACATACCTAGTCTACA
TCTTGTTTTTTCTCCTTCACATTTATTCCCAGTGCTCGATGGGCTCCTTG
CCACTGTGCCACGAGGTTAAAATCTTGCCAGAGTACTGAACCGTGGTCAC
ACAGAAGGGTTCCTTTTTTCCCAAGGCCCCCACCACCCCCTTCTGCGGTG
CTTGCCTAAGATTTGTGTCCCGAGAAGGGTTCAGCCGCCCCTTTCCCTCG
TCGACGGTGAGGTAGAAGTCCACTGACAGGGACGGAAGCGAGAGAGAAAG
ACTTACTTCGCAAGAAAAAGTCGCTTCCGCCGGATTTCGAACCCATGACC
TTCCTGCTAGAAGGTGTTCGGGGGTACAACACGTGTACGTGTAACAGCAC
ATGTGACAGCTGATACCCAACATAAAGCGCAGCACGTGGAGCTTCTTTAA
GATCGTTCAGGGGCTACGACCAACTGTCACGTAAATGTGGTGCGTATTGC
AACCTGAGCATTTGTGTACTCTCTACTTAAAAAGTCGCGCATTTTTGGAC
CGTCAACTTGCTCAGCCGGCGGTCAACTCTCGAACCTGCGGTGAAGAGTT
CAAGAAACCAACATGGACATATTGTATTGTATATTATACTTTGCCTTCAA
AACATTACTCTAGACCCTCTCTCCCTCGGGTGGCGGTAAATGTTAGTGTT
CGACGTGCGACGTTTCATCTACAAATTCAAAGATATGACGCCGCCTATCA
ATTGTCGATGGTCGTCAGCTCTTCGAGCAGTAAGCTGACAGTGCCGCCGG
CTTGTCAAGAGATGCCTCGATACACGAGTTGACACACGTTGCCAAAGACA
ACGGTGATATATGCATACACATAGAGGTGCGTTAACTTCCGAGCTTCTCC
TCAGCGCTTGGCGATACTGTACGCCACGTTTACAGGGCGGACTTCAAAGG
GTTGTGCTACATACGGAGGGAGTGTTGTCAACGTTCGTGACATGAATTCT
CCTCCCACCCGTTCCCGCTGCACCTCTCGCAACACGAACACCCGTGCCGT
CCTTAAGAAGTGCTTCTTCTAGCCCCTTACATACGTCAACAGCGTCGTTC
TAGTGGGGGGGGCGATGTAGACAAGCAACATAACCCCTCCCTCACCACCC
CTGGCAACAGCAGTGGCATAAAATCAACAAGGCCTTAAGTTTCTTCTTTT
GGCAGATGTGTATACTTGTTTTCAGTGGGTACTGCTGTTGTACGACTGAC
ATTTTAACGTGCCGCCGTTGTTGTGACTAAATTACCGACTGCCCCATCTC
CGTCCCGACGTGTGCTCGATCTTAAGGCCGGGGTGCTCTTCGGCGGTGTC
CTGGGGGGCGTTGTGGTGGGCGCGGCGGCGGTCGGGGCCTCGATCGTCTC
GAGGCGCAATCGGGACAGAGGCGACGACGGCGTCCACGTTGTTTCTTGCG
TCTCAAACGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTGGCCGT
GCGGCCGCTGCTGGCCGCGCGGGTGTGAGCTACGGCGGCGTGACGACTCG
AGAAGAGGTGAGATTTTTCGGTGCGGTTTGGGCCGCGTGTTCGCTGCCCT
TGTATTCGTGAAAAGTTGGTTTGTTTGGTCGTGTTTGCGACAAGCTGTTT
CGTTGTATGGTTCATGGGTCTCTCTCTCTGTGTCTCTCTCTCTGTCTCTC
TCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTGTCCAGC
GAACGCTAAGTACACCGACGACGCCTCACTATTCTCTTCTTTTTTGTCGC
GCCCCCCAGGCGATGCTGGCCACCGGAAGGGCCATCAACGCGACAACGAC
GTTGACGTGCGCGGCTGCCCTCGGAAGGGCGGACCAGGGGGCGACGGCGG
GCGATTCCGGCTCAGGCGAGGAGGGGGTGCCCCTTTCCCTTCCCTCCGCG
CACCCCGTGGCAAGCCTCGTCGCGACTCCGTGCACTTCGAGGTACGCACG
TGTCATGTTGTGCGTGTGTGCCCCCCCCCGCCTGTGTGTCTTCTTGGGGG
CCTTGATCGGCGGCGGCGGCGGTGTTGCGGCGGAAATCTGACGTGGCGAG
TGAAGTGTCCACAGGAGTGCTGCCGGTGTTTCTTGTGGTCTGGGTCTGGG
TCGGCGGCGGTCGTTGAAACTGCGGCGTGCCGCGGCGGCAAGGATCTAGG
GGTGCGGCCGCGTCGTGCGGCCGTGATGATGATACTGTGTGCGCAAAAAC
AAAACCCACGTGTGTTTCTTCCACGGCCGCAGTGGAAGCGGTAGTCGTGT
TGGGAGGTGCTGAAACGGTGCGGCGGGATGTCGAAGGCAGATTTAGGCGC
GGTGTCGTTGTGCAATAGGTAAATATTGGCCTTCAGACAACGACCGCACC
GCACGGCTAGATACACATGGAGTGATGTTTGTGTACCGGAGGTAAATAAG
AACATTTTTTTTTTCGAAATGGCACAGGAACGGGGAATCAGGAGGCCTGC
CCTGGTTCACTCCGTGAAGAGTCGAAGCGACCCCCCCCCCCCTTGTCGAT
GCTGGTACTGGCCGCCTGCTGTCTGTGCCTGCCGCACCGAAACAGGTCCA
TCCGAAGGGCCCGCAGGCTGACAGCGGTCACCGCGACACCGGCCAGCAGC
AGCAGCAACGTCGCGTTCGTGGTCCCGATACACTGCACCGATGTCAGTAC
CGGCGGGGGCGGAAGCGCCGCCGTCCCGGCCCCCGCCCCCGCCCCTGCCC
CCGCCCCCGGAGGAGCCCCAGCGCCCGCAGCGGTGGCGGCGGCGGGGGCG
GGGGCGGGGGCGGCGGTGGTAGCGGCGACGACGGGCGGGCTCAACCGCCC
CGCTTCGATCGCGCCCGGCGGTACTAGTGCTGGCGGCGGCGGCGAGGGGC
GCAGCAGTGACAACAACATCGCAGACACGGCCCGGCGATGGTGGACAAAC
AGCACTGCCGTCGGCGTCGTCGGGGCGGCCGTCCTCGGCGGGCCGGGGGG
CGGCGGCGACGAGGAAAGCGAAGACGAGGACGATGAGGCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig196:46696..50938+

>mRNA_L-elsbetiae_contig196.5840.1 ID=mRNA_L-elsbetiae_contig196.5840.1|Name=mRNA_L-elsbetiae_contig196.5840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1422bp|location=Sequence derived from alignment at L-elsbetiae_contig196:46696..50938+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGACGACTCTTGTGATCAGGGAGGGGGGGGGGGGACAAGGCGATG
CTATCGACATAACAGGTACAGCTTGAGGGAATTTCGTCGATCCACGCGAC
CTGGTGCTACCACTGCTGCCGCTGGAGAAGATGGCAGGAGCGTACACCAA
GCGCTGTGCCGCGGGATCGTGATGTGTGACGACTCTTGTGATCAGGGAGG
GGGGGGGGGGACAAGGCGATGCTATCGACATAACAGGTACAGCTTGAGGG
AATTTCGTCGATCCACGCGACCTGGTGCTACCACTGCTGCCGCTGGAGAA
GATGGCAGGAGCGTACACCAAGCGCTGTGCCGCGGGATCGTGGCCGGGGT
GCTCTTCGGCGGTGTCCTGGGGGGCGTTGTGGTGGGCGCGGCGGCGGTCG
GGGCCTCGATCGTCTCGAGGCGCAATCGGGACAGAGGCGACGACGGCGTC
CACGTTGTTTCTTGCGTCTCAAACGCCGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCTGCTGGCCGTGCGGCCGCTGCTGGCCGCGCGGGTGTGAGCTACG
GCGGCGTGACGACTCGAGAAGAGGCCGGGGTGCTCTTCGGCGGTGTCCTG
GGGGGCGTTGTGGTGGGCGCGGCGGCGGTCGGGGCCTCGATCGTCTCGAG
GCGCAATCGGGACAGAGGCGACGACGGCGTCCACGTTGTTTCTTGCGTCT
CAAACGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTGGCCGTGCG
GCCGCTGCTGGCCGCGCGGGTGTGAGCTACGGCGGCGTGACGACTCGAGA
AGAGGCGATGCTGGCCACCGGAAGGGCCATCAACGCGACAACGACGTTGA
CGTGCGCGGCTGCCCTCGGAAGGGCGGACCAGGGGGCGACGGCGGGCGAT
TCCGGCTCAGGCGAGGAGGGGGTGCCCCTTTCCCTTCCCTCCGCGCACCC
CGTGGCAAGCCTCGTCGCGACTCCGTGCACTTCGAGGCGATGCTGGCCAC
CGGAAGGGCCATCAACGCGACAACGACGTTGACGTGCGCGGCTGCCCTCG
GAAGGGCGGACCAGGGGGCGACGGCGGGCGATTCCGGCTCAGGCGAGGAG
GGGGTGCCCCTTTCCCTTCCCTCCGCGCACCCCGTGGCAAGCCTCGTCGC
GACTCCGTGCACTTCGAGCAGCAGCAACGTCGCGTTCGTGGTCCCGATAC
ACTGCACCGATGTCAGTACCCAGCAGCAACGTCGCGTTCGTGGTCCCGAT
ACACTGCACCGATGTCAGTACCGGCGGGGGCGGCGGTGGTAGCGGCGACG
ACGGGCGGGCTCAACCGCCCCGCTTCGATCGCGCCCGGCGGTACTAGGGC
GGGGGCGGCGGTGGTAGCGGCGACGACGGGCGGGCTCAACCGCCCCGCTT
CGATCGCGCCCGGCGGTACTAG
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