prot_L-elsbetiae_contig19554.5820.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig19554.5820.1
Unique Nameprot_L-elsbetiae_contig19554.5820.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length179
Homology
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: D8LR37_ECTSI (Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR37_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 1.670e-111
Identity = 159/172 (92.44%), Postives = 165/172 (95.93%), Query Frame = 0
Query:    1 MELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEF 172
            +ELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQ FRERQVRKRYVAIVHGVL ADEGEVDLPLCRN GCPPLHMVN EHGKPSLTKWRVL+RAADRTRVELIPVSGRSHQLRLHM+AIGHPILGDHFYGT +SLALA RCLLHAHTLCLRHP TG+RT+FTAPCEF
Sbjct:   86 LELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQ-FRERQVRKRYVAIVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTTDSLALAGRCLLHAHTLCLRHPKTGERTMFTAPCEF 256          
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: A0A6H5KN60_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN60_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 1.770e-111
Identity = 160/172 (93.02%), Postives = 166/172 (96.51%), Query Frame = 0
Query:    1 MELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEF 172
            +ELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQ FRERQVRKRYVA+VHGVL ADEGEVDLPLCRN GCPPLHMVN EHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHM+AIGHPILGDHFYGTK+SL LADRCLLHAHTLCLRHP TG+RT+FTAPCEF
Sbjct:  160 LELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQ-FRERQVRKRYVAMVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLDLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 330          
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: A0A369WRJ6_9GAMM (Pseudouridine synthase n=1 Tax=Motiliproteus coralliicola TaxID=2283196 RepID=A0A369WRJ6_9GAMM)

HSP 1 Score: 175 bits (443), Expect = 2.400e-52
Identity = 88/161 (54.66%), Postives = 119/161 (73.91%), Query Frame = 0
Query:   12 IVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEF 172
            IVHRLD ATSG +++A    + ++L+RQ F +R+ RKRY+A+V G L   +G V+LPL  +    P  MV+ + GKP+LT++R+L++A DR+RVELIP++GRSHQLR+HM A+GHPILGD FY T  +LA ADR  LHA  L +RHP +G+R  FTAPC F
Sbjct:   47 IVHRLDCATSGVMVLALDADSHRELSRQ-FHDRETRKRYIAVVDGTLKQHQGRVELPLRCDWPNRPKQMVDHDQGKPALTEYRLLDQADDRSRVELIPITGRSHQLRVHMQALGHPILGDRFYATPSALAKADRLNLHAEQLGIRHPVSGERMEFTAPCPF 206          
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: A0A291HLR0_9GAMM (Pseudouridine synthase n=4 Tax=Zobellella denitrificans TaxID=347534 RepID=A0A291HLR0_9GAMM)

HSP 1 Score: 175 bits (443), Expect = 4.030e-52
Identity = 92/173 (53.18%), Postives = 118/173 (68.21%), Query Frame = 0
Query:    6 YRVDRM-----IVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEFE 173
            YRV R+     +VHRLDMATSG ++MA    A ++L+RQ FRER+  KRY A VHG L  D G +DLPLC +    P HMV++EHGKP+LT WR L R  DR+ VEL P++GRSHQLR+HM ++GHPILGD+ Y + E+LA+A    LHA  L  RHP + +   F+AP  F 
Sbjct:   48 YRVARVYPGVQVVHRLDMATSGVIVMALHPKAHRELSRQ-FRERETAKRYYAWVHGRLEQDAGSIDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPDRSLVELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALAMAPHLQLHAAWLAFRHPRSKQWLEFSAPAPFS 219          
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: A0A836CD05_9STRA (Pseudouridylate synthase, 23S RNA-specific n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD05_9STRA)

HSP 1 Score: 175 bits (443), Expect = 4.540e-52
Identity = 93/177 (52.54%), Postives = 117/177 (66.10%), Query Frame = 0
Query:    1 MELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLER-----AADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEF 172
            ++ G  R+D+M+VHRLD ATSG V+ ARTD AL+ L+ + FR R+V K Y A+V+G ++ D GEV  P+ ++   PPL +++   GKP  T W VL R      AD TRV L PV+GRSHQLRLHM  +GHPILGD  Y    + ALA RCLLHA TL  RHPATG+   F  P EF
Sbjct:   52 VKFGQARIDKMVVHRLDQATSGLVLFARTDEALRALH-EDFRLRRVSKCYEAVVYGSVAGDSGEVTEPMRKDMDNPPLQLIDHVQGKPCQTLWSVLSRETRGGGADATRVALTPVTGRSHQLRLHMQVLGHPILGDDLYAHAAARALAPRCLLHARTLRFRHPATGEDLSFEVPPEF 227          
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: A0A233RBH1_9GAMM (Pseudouridine synthase n=4 Tax=Oceanimonas TaxID=129577 RepID=A0A233RBH1_9GAMM)

HSP 1 Score: 170 bits (431), Expect = 2.480e-50
Identity = 88/162 (54.32%), Postives = 109/162 (67.28%), Query Frame = 0
Query:   12 IVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEFE 173
            +VHRLDMATSG ++MA    A ++L+RQ FRER+  KRY A VHG  S DEG +DLPLC +    P HMV+ EHGK +LT WR L R   R+ +EL P++GRSHQLR+HM ++GHPILGD+ Y   E+L +A    LHA  L  RHP    R  FTAP  FE
Sbjct:   59 VVHRLDMATSGVIVMALNPKAHRELSRQ-FRERETEKRYYAWVHGQPSEDEGSIDLPLCCDWPNRPRHMVSHEHGKKALTHWRCLRREGQRSLMELTPITGRSHQLRVHMLSLGHPILGDNLYAEGEALTMAPHLQLHAAWLAFRHPRYKHRLEFTAPAPFE 219          
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: V4N4Z6_9CAUL (Pseudouridine synthase n=1 Tax=Asticcacaulis sp. YBE204 TaxID=1282363 RepID=V4N4Z6_9CAUL)

HSP 1 Score: 169 bits (427), Expect = 6.160e-50
Identity = 92/164 (56.10%), Postives = 113/164 (68.90%), Query Frame = 0
Query:    9 DRMIVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEF 172
            D +IVHRLDMATSG ++MAR   A + L+   F ER+V KRYVA+V G +  +EGEVDLPL  +    P  M++   GKPSLT++RV+ R ADRTRVEL PV+GRSHQLR+HM A+GHPI+GD FY   E  AL+ R  LHA  L L HP TG+   F AP  F
Sbjct:   43 DALIVHRLDMATSGLIVMARGAEAHRTLS-IAFAERRVHKRYVAVVAGQVRDEEGEVDLPLITDWPNRPKQMIDYTIGKPSLTRYRVIAREADRTRVELEPVTGRSHQLRVHMMALGHPIIGDVFYAPTEIQALSSRLWLHAERLDLPHPVTGEALRFEAPAAF 205          
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: A0A2P7QL36_9GAMM (Pseudouridine synthase n=1 Tax=Zobellella taiwanensis TaxID=347535 RepID=A0A2P7QL36_9GAMM)

HSP 1 Score: 169 bits (427), Expect = 1.060e-49
Identity = 90/173 (52.02%), Postives = 117/173 (67.63%), Query Frame = 0
Query:    6 YRVDRM-----IVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEFE 173
            YRV R+     +VHRLDMATSG ++MA    A ++L+RQ FRER+  KRY A V+G  +AD G VDLPLC +    P HMV++EHGKP+LT WR L R   R+ +EL P++GRSHQLR+HM ++GHPILGD+ Y + E+L +A +  LHA  L  RHP       FTAP  F+
Sbjct:   48 YRVARVYPDVQVVHRLDMATSGVIVMALHPKAHRELSRQ-FRERETEKRYYAWVYGSPAADAGSVDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPGRSLLELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALTMAPQLQLHAAHLAFRHPRYRHWLEFTAPAPFD 219          
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: UPI001C984345 (bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA n=1 Tax=Marinobacter nauticus TaxID=2743 RepID=UPI001C984345)

HSP 1 Score: 167 bits (422), Expect = 5.350e-49
Identity = 89/161 (55.28%), Postives = 114/161 (70.81%), Query Frame = 0
Query:   13 VHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEFE 173
            VHRLDMATSG +++A    A ++L RQ FRER+  K YVA V G L+  EGEVDLPL  +    P  MV  E+GKPSLT++RV+      + VEL P++GRSHQLR+HM A+GHPILGD FY  +E+LA +DR LLHAHTLC++ P +G+   FTAP  F+
Sbjct:   60 VHRLDMATSGVMVLALRKNAERELKRQ-FRERETSKSYVARVWGHLAQPEGEVDLPLICDWPNRPKQMVCFENGKPSLTQYRVMSEDERSSLVELTPITGRSHQLRVHMLALGHPILGDSFYAHEEALAASDRLLLHAHTLCIKQPYSGEPLSFTAPVPFD 219          
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: A0A3T0VJP8_9GAMM (Pseudouridine synthase n=3 Tax=Hahella TaxID=158481 RepID=A0A3T0VJP8_9GAMM)

HSP 1 Score: 164 bits (416), Expect = 4.450e-48
Identity = 86/161 (53.42%), Postives = 113/161 (70.19%), Query Frame = 0
Query:   12 IVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEF 172
            +VHRLD+ATSG +++A    A K+L RQ F ER+VRK Y+A V GV+  D+GEVDLPL  +    P   V  EHGKP++T +RVL R  + T VEL PV+GRSHQLR+HM ++GHPILGD FY + E+LA +DR LLHA +L  +HP +G+   F  P +F
Sbjct:   60 VVHRLDLATSGVLVLALRRNAEKELKRQ-FMEREVRKTYIAKVWGVIKEDQGEVDLPLICDWPNRPKQKVCFEHGKPAVTGYRVLAREDNATLVELYPVTGRSHQLRVHMLSLGHPILGDRFYASPEALAASDRLLLHAQSLSFKHPYSGEDMTFQVPADF 219          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR37_ECTSI1.670e-11192.44Pseudouridylate synthases, 23S RNA-specific n=1 Ta... [more]
A0A6H5KN60_9PHAE1.770e-11193.02PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A369WRJ6_9GAMM2.400e-5254.66Pseudouridine synthase n=1 Tax=Motiliproteus coral... [more]
A0A291HLR0_9GAMM4.030e-5253.18Pseudouridine synthase n=4 Tax=Zobellella denitrif... [more]
A0A836CD05_9STRA4.540e-5252.54Pseudouridylate synthase, 23S RNA-specific n=1 Tax... [more]
A0A233RBH1_9GAMM2.480e-5054.32Pseudouridine synthase n=4 Tax=Oceanimonas TaxID=1... [more]
V4N4Z6_9CAUL6.160e-5056.10Pseudouridine synthase n=1 Tax=Asticcacaulis sp. Y... [more]
A0A2P7QL36_9GAMM1.060e-4952.02Pseudouridine synthase n=1 Tax=Zobellella taiwanen... [more]
UPI001C9843455.350e-4955.28bifunctional tRNA pseudouridine(32) synthase/23S r... [more]
A0A3T0VJP8_9GAMM4.450e-4853.42Pseudouridine synthase n=3 Tax=Hahella TaxID=15848... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 12..122
e-value: 5.2E-25
score: 88.4
NoneNo IPR availableGENE3D3.30.2350.10coord: 2..175
e-value: 8.6E-53
score: 181.1
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 11..172
NoneNo IPR availablePANTHERPTHR21600:SF43RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Acoord: 11..172
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 13..27
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 8..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19554contigL-elsbetiae_contig19554:225..2329 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19554.5820.1mRNA_L-elsbetiae_contig19554.5820.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig19554 225..2347 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig19554.5820.1 ID=prot_L-elsbetiae_contig19554.5820.1|Name=mRNA_L-elsbetiae_contig19554.5820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
MELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRY
VAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAA
DRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHA
HTLCLRHPATGKRTLFTAPCEFEGLDFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom_sf