mRNA_L-elsbetiae_contig19554.5820.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: D8LR37_ECTSI (Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR37_ECTSI) HSP 1 Score: 332 bits (851), Expect = 1.570e-113 Identity = 163/178 (91.57%), Postives = 169/178 (94.94%), Query Frame = 1 Query: 1 LLCRAAMELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEF 534 L RAA+ELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQ FRERQVRKRYVAIVHGVL ADEGEVDLPLCRN GCPPLHMVN EHGKPSLTKWRVL+RAADRTRVELIPVSGRSHQLRLHM+AIGHPILGDHFYGT +SLALA RCLLHAHTLCLRHP TG+RT+FTAPCEF Sbjct: 80 LATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQ-FRERQVRKRYVAIVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTTDSLALAGRCLLHAHTLCLRHPKTGERTMFTAPCEF 256
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: A0A6H5KN60_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN60_9PHAE) HSP 1 Score: 335 bits (858), Expect = 1.680e-113 Identity = 164/178 (92.13%), Postives = 170/178 (95.51%), Query Frame = 1 Query: 1 LLCRAAMELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEF 534 L RAA+ELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQ FRERQVRKRYVA+VHGVL ADEGEVDLPLCRN GCPPLHMVN EHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHM+AIGHPILGDHFYGTK+SL LADRCLLHAHTLCLRHP TG+RT+FTAPCEF Sbjct: 154 LATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQ-FRERQVRKRYVAMVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLDLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 330
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: A0A836CD05_9STRA (Pseudouridylate synthase, 23S RNA-specific n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD05_9STRA) HSP 1 Score: 179 bits (455), Expect = 8.670e-54 Identity = 96/183 (52.46%), Postives = 121/183 (66.12%), Query Frame = 1 Query: 1 LLCRAAMELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLER-----AADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEF 534 L+ R A++ G R+D+M+VHRLD ATSG V+ ARTD AL+ L+ + FR R+V K Y A+V+G ++ D GEV P+ ++ PPL +++ GKP T W VL R AD TRV L PV+GRSHQLRLHM +GHPILGD Y + ALA RCLLHA TL RHPATG+ F P EF Sbjct: 46 LVSRVAVKFGQARIDKMVVHRLDQATSGLVLFARTDEALRALH-EDFRLRRVSKCYEAVVYGSVAGDSGEVTEPMRKDMDNPPLQLIDHVQGKPCQTLWSVLSRETRGGGADATRVALTPVTGRSHQLRLHMQVLGHPILGDDLYAHAAARALAPRCLLHARTLRFRHPATGEDLSFEVPPEF 227
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: A0A369WRJ6_9GAMM (Pseudouridine synthase n=1 Tax=Motiliproteus coralliicola TaxID=2283196 RepID=A0A369WRJ6_9GAMM) HSP 1 Score: 175 bits (443), Expect = 3.000e-52 Identity = 88/161 (54.66%), Postives = 119/161 (73.91%), Query Frame = 1 Query: 52 IVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEF 534 IVHRLD ATSG +++A + ++L+RQ F +R+ RKRY+A+V G L +G V+LPL + P MV+ + GKP+LT++R+L++A DR+RVELIP++GRSHQLR+HM A+GHPILGD FY T +LA ADR LHA L +RHP +G+R FTAPC F Sbjct: 47 IVHRLDCATSGVMVLALDADSHRELSRQ-FHDRETRKRYIAVVDGTLKQHQGRVELPLRCDWPNRPKQMVDHDQGKPALTEYRLLDQADDRSRVELIPITGRSHQLRVHMQALGHPILGDRFYATPSALAKADRLNLHAEQLGIRHPVSGERMEFTAPCPF 206
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: A0A291HLR0_9GAMM (Pseudouridine synthase n=4 Tax=Zobellella denitrificans TaxID=347534 RepID=A0A291HLR0_9GAMM) HSP 1 Score: 175 bits (443), Expect = 5.020e-52 Identity = 92/173 (53.18%), Postives = 118/173 (68.21%), Query Frame = 1 Query: 34 YRVDRM-----IVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEFE 537 YRV R+ +VHRLDMATSG ++MA A ++L+RQ FRER+ KRY A VHG L D G +DLPLC + P HMV++EHGKP+LT WR L R DR+ VEL P++GRSHQLR+HM ++GHPILGD+ Y + E+LA+A LHA L RHP + + F+AP F Sbjct: 48 YRVARVYPGVQVVHRLDMATSGVIVMALHPKAHRELSRQ-FRERETAKRYYAWVHGRLEQDAGSIDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPDRSLVELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALAMAPHLQLHAAWLAFRHPRSKQWLEFSAPAPFS 219
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: A0A233RBH1_9GAMM (Pseudouridine synthase n=4 Tax=Oceanimonas TaxID=129577 RepID=A0A233RBH1_9GAMM) HSP 1 Score: 170 bits (431), Expect = 3.080e-50 Identity = 88/162 (54.32%), Postives = 109/162 (67.28%), Query Frame = 1 Query: 52 IVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEFE 537 +VHRLDMATSG ++MA A ++L+RQ FRER+ KRY A VHG S DEG +DLPLC + P HMV+ EHGK +LT WR L R R+ +EL P++GRSHQLR+HM ++GHPILGD+ Y E+L +A LHA L RHP R FTAP FE Sbjct: 59 VVHRLDMATSGVIVMALNPKAHRELSRQ-FRERETEKRYYAWVHGQPSEDEGSIDLPLCCDWPNRPRHMVSHEHGKKALTHWRCLRREGQRSLMELTPITGRSHQLRVHMLSLGHPILGDNLYAEGEALTMAPHLQLHAAWLAFRHPRYKHRLEFTAPAPFE 219
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: V4N4Z6_9CAUL (Pseudouridine synthase n=1 Tax=Asticcacaulis sp. YBE204 TaxID=1282363 RepID=V4N4Z6_9CAUL) HSP 1 Score: 169 bits (427), Expect = 7.670e-50 Identity = 92/164 (56.10%), Postives = 113/164 (68.90%), Query Frame = 1 Query: 43 DRMIVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEF 534 D +IVHRLDMATSG ++MAR A + L+ F ER+V KRYVA+V G + +EGEVDLPL + P M++ GKPSLT++RV+ R ADRTRVEL PV+GRSHQLR+HM A+GHPI+GD FY E AL+ R LHA L L HP TG+ F AP F Sbjct: 43 DALIVHRLDMATSGLIVMARGAEAHRTLS-IAFAERRVHKRYVAVVAGQVRDEEGEVDLPLITDWPNRPKQMIDYTIGKPSLTRYRVIAREADRTRVELEPVTGRSHQLRVHMMALGHPIIGDVFYAPTEIQALSSRLWLHAERLDLPHPVTGEALRFEAPAAF 205
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: A0A2P7QL36_9GAMM (Pseudouridine synthase n=1 Tax=Zobellella taiwanensis TaxID=347535 RepID=A0A2P7QL36_9GAMM) HSP 1 Score: 169 bits (427), Expect = 1.320e-49 Identity = 90/173 (52.02%), Postives = 117/173 (67.63%), Query Frame = 1 Query: 34 YRVDRM-----IVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEFE 537 YRV R+ +VHRLDMATSG ++MA A ++L+RQ FRER+ KRY A V+G +AD G VDLPLC + P HMV++EHGKP+LT WR L R R+ +EL P++GRSHQLR+HM ++GHPILGD+ Y + E+L +A + LHA L RHP FTAP F+ Sbjct: 48 YRVARVYPDVQVVHRLDMATSGVIVMALHPKAHRELSRQ-FRERETEKRYYAWVYGSPAADAGSVDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPGRSLLELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALTMAPQLQLHAAHLAFRHPRYRHWLEFTAPAPFD 219
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: UPI001C984345 (bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA n=1 Tax=Marinobacter nauticus TaxID=2743 RepID=UPI001C984345) HSP 1 Score: 167 bits (422), Expect = 6.660e-49 Identity = 89/161 (55.28%), Postives = 114/161 (70.81%), Query Frame = 1 Query: 55 VHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEFE 537 VHRLDMATSG +++A A ++L RQ FRER+ K YVA V G L+ EGEVDLPL + P MV E+GKPSLT++RV+ + VEL P++GRSHQLR+HM A+GHPILGD FY +E+LA +DR LLHAHTLC++ P +G+ FTAP F+ Sbjct: 60 VHRLDMATSGVMVLALRKNAERELKRQ-FRERETSKSYVARVWGHLAQPEGEVDLPLICDWPNRPKQMVCFENGKPSLTQYRVMSEDERSSLVELTPITGRSHQLRVHMLALGHPILGDSFYAHEEALAASDRLLLHAHTLCIKQPYSGEPLSFTAPVPFD 219
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Match: A0A3T0VJP8_9GAMM (Pseudouridine synthase n=3 Tax=Hahella TaxID=158481 RepID=A0A3T0VJP8_9GAMM) HSP 1 Score: 164 bits (416), Expect = 5.530e-48 Identity = 86/161 (53.42%), Postives = 113/161 (70.19%), Query Frame = 1 Query: 52 IVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYVAIVHGVLSADEGEVDLPLCRNTGCPPLHMVNVEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLALADRCLLHAHTLCLRHPATGKRTLFTAPCEF 534 +VHRLD+ATSG +++A A K+L RQ F ER+VRK Y+A V GV+ D+GEVDLPL + P V EHGKP++T +RVL R + T VEL PV+GRSHQLR+HM ++GHPILGD FY + E+LA +DR LLHA +L +HP +G+ F P +F Sbjct: 60 VVHRLDLATSGVLVLALRRNAEKELKRQ-FMEREVRKTYIAKVWGVIKEDQGEVDLPLICDWPNRPKQKVCFEHGKPAVTGYRVLAREDNATLVELYPVTGRSHQLRVHMLSLGHPILGDRFYASPEALAASDRLLLHAQSLSFKHPYSGEDMTFQVPADF 219 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19554.5820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig19554.5820.1 >prot_L-elsbetiae_contig19554.5820.1 ID=prot_L-elsbetiae_contig19554.5820.1|Name=mRNA_L-elsbetiae_contig19554.5820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp MELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQQFRERQVRKRYback to top mRNA from alignment at L-elsbetiae_contig19554:225..2347- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig19554.5820.1 ID=mRNA_L-elsbetiae_contig19554.5820.1|Name=mRNA_L-elsbetiae_contig19554.5820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2123bp|location=Sequence derived from alignment at L-elsbetiae_contig19554:225..2347- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig19554:225..2347- >mRNA_L-elsbetiae_contig19554.5820.1 ID=mRNA_L-elsbetiae_contig19554.5820.1|Name=mRNA_L-elsbetiae_contig19554.5820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig19554:225..2347- (Laminarionema elsbetiae ELsaHSoW15)back to top |