prot_L-elsbetiae_contig1906.5611.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1906.5611.1
Unique Nameprot_L-elsbetiae_contig1906.5611.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length309
Homology
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BLAST of mRNA_L-elsbetiae_contig1906.5611.1 vs. uniprot
Match: A0A6H5JK20_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK20_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.770e-10
Identity = 43/75 (57.33%), Postives = 49/75 (65.33%), Query Frame = 0 
Query:    6 RGPGRPRLSDRRGVPLG-------------GXXXXXNAYGEEMRPSGSSTVEIRLGFTGRRFVRLKLDNCPRPEA 67
            RGPGRPRL++RRGV  G              XXXX + YG E RP+ S TVE+RL FTG+R VRLKLDNCP  EA
Sbjct:  166 RGPGRPRLAERRGVSAGRGGSGSVGIVGXXXXXXXADPYGVERRPAWSGTVEVRLAFTGQRSVRLKLDNCPSSEA 240
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BLAST of mRNA_L-elsbetiae_contig1906.5611.1 vs. uniprot
Match: D8LN85_ECTSI (Histone deacetylase superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN85_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.580e-5
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0 
Query:  166 FFTPKPMAGPRPALARGGWASLTASTAAATF 196
            FFTP PMAGPRPALARGGWASL ASTAAATF
Sbjct:  501 FFTPTPMAGPRPALARGGWASLFASTAAATF 531
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1906.5611.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK20_9PHAE1.770e-1057.33Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
D8LN85_ECTSI2.580e-593.55Histone deacetylase superfamily n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1906contigL-elsbetiae_contig1906:3657..5386 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1906.5611.1mRNA_L-elsbetiae_contig1906.5611.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1906 3657..5386 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1906.5611.1 ID=prot_L-elsbetiae_contig1906.5611.1|Name=mRNA_L-elsbetiae_contig1906.5611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=309bp
GPSGPRGPGRPRLSDRRGVPLGGGGGGGNAYGEEMRPSGSSTVEIRLGFT
GRRFVRLKLDNCPRPEAGASAATAGQAGTAKDQVQDAEMADVKASSTPPR
TSVSAYEGEGREWGAEGGKVDAHSKQQQASTPTPAAPFTAAPAAGAATAV
VSGGGGGGGGGGARHFFTPKPMAGPRPALARGGWASLTASTAAATFVPPN
RHSGSSTGEVPENTGGGTGNVGRSSKNSNFKENGGGMSGGTAAAAVPVPK
QDASEAPALGSAAAATGSESWWVHRPVAVLSCLRELLLVSEKAPPPSSSS
SSPSSPLSS
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