prot_L-elsbetiae_contig1897.5573.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1897.5573.1
Unique Nameprot_L-elsbetiae_contig1897.5573.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length78
Homology
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BLAST of mRNA_L-elsbetiae_contig1897.5573.1 vs. uniprot
Match: D7G069_ECTSI (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G069_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 8.140e-21
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0 
Query:    9 KGKKVKQNKDQTQTRIANMKEAEKHSDSFNSNQDMFETFINPKSFTQTVENIFDFSFFVKSGEGHISID 77
            KGKK KQNKDQTQ RIA M+E EK  +   S +DMFET +NPKSFTQTVEN+FDFSFFVK GEGHI+ID
Sbjct:  301 KGKKAKQNKDQTQMRIAKMREHEK--EDAGSKKDMFETLVNPKSFTQTVENLFDFSFFVKRGEGHITID 367
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BLAST of mRNA_L-elsbetiae_contig1897.5573.1 vs. uniprot
Match: A0A6H5JPS6_9PHAE (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.750e-13
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0 
Query:   43 MFETFINPKSFTQTVENIFDFSFFVKSGEGHISID 77
            MFET INPKSFTQTVEN+FDFSFFVKSGEGHI+ID
Sbjct:    1 MFETLINPKSFTQTVENLFDFSFFVKSGEGHITID 35
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BLAST of mRNA_L-elsbetiae_contig1897.5573.1 vs. uniprot
Match: G5ADR1_PHYSP (Non-structural maintenance of chromosomes element 4 n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5ADR1_PHYSP)

HSP 1 Score: 48.1 bits (113), Expect = 5.920e-5
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 0 
Query:   41 QDMFETFINPKSFTQTVENIFDFSFFVKSGEGHISIDE 78
            Q +F+  INPKSFTQTVEN+FD SF V++    + IDE
Sbjct:   63 QPLFDVVINPKSFTQTVENLFDTSFLVRNSAAEVGIDE 100
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BLAST of mRNA_L-elsbetiae_contig1897.5573.1 vs. uniprot
Match: A0A225VE20_9STRA (Non-structural maintenance of chromosomes element 4 (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VE20_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 7.060e-5
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 0 
Query:   38 NSNQDMFETFINPKSFTQTVENIFDFSFFVKSGEGHISIDE 78
            N    +F+  INPKSFTQTVEN+FD SF V++    + IDE
Sbjct:   49 NDRHSLFDMVINPKSFTQTVENLFDTSFLVRNSSAEVGIDE 89
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1897.5573.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G069_ECTSI8.140e-2173.91Non-structural maintenance of chromosomes element ... [more]
A0A6H5JPS6_9PHAE4.750e-1391.43Non-structural maintenance of chromosomes element ... [more]
G5ADR1_PHYSP5.920e-557.89Non-structural maintenance of chromosomes element ... [more]
A0A225VE20_9STRA7.060e-553.66Non-structural maintenance of chromosomes element ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014854Non-structural maintenance of chromosome element 4, C-terminalPFAMPF08743Nse4_Ccoord: 42..78
e-value: 1.4E-12
score: 47.7
IPR027786Nse4/EID familyPANTHERPTHR16140UNCHARACTERIZEDcoord: 9..78
NoneNo IPR availablePANTHERPTHR16140:SF0NSE4 HOMOLOG A, SMC5-SMC6 COMPLEX COMPONENTcoord: 9..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1897contigL-elsbetiae_contig1897:6124..9033 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1897.5573.1mRNA_L-elsbetiae_contig1897.5573.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1897 6124..9034 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1897.5573.1 ID=prot_L-elsbetiae_contig1897.5573.1|Name=mRNA_L-elsbetiae_contig1897.5573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
VRPDVDGGKGKKVKQNKDQTQTRIANMKEAEKHSDSFNSNQDMFETFINP
KSFTQTVENIFDFSFFVKSGEGHISIDE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014854Nse4_C
IPR027786Nse4/EID