prot_L-elsbetiae_contig17708.5027.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig17708.5027.1
Unique Nameprot_L-elsbetiae_contig17708.5027.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length83
Homology
BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 5.290e-23
Identity = 58/100 (58.00%), Postives = 67/100 (67.00%), Query Frame = 0
Query:    2 KDVFMMRLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKV------------------KGRPLERPENHTPDLWMTLKTRGELVTR 83
            KD  +MRLSRRIARSG+ SRREAER+VEAGV+ +N   V+TPALNVG R IVKV                  +G+ LERPE+HTP LWM  K R ELVTR
Sbjct:  108 KDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFQQPGNGTDCFTFVQGKVLERPESHTPKLWMVHKMRNELVTR 207          
BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.800e-21
Identity = 58/118 (49.15%), Postives = 66/118 (55.93%), Query Frame = 0
Query:    2 KDVFMMRLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVK------------------------------------GRPLERPENHTPDLWMTLKTRGELVTR 83
            KD  +MRLSRRIARSG+ SRREAER+VEAGV+ +N   V+TPALNVG R IVKV                                     G+ LERPE+HTP LWM  K R ELVTR
Sbjct:  108 KDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFLQLGNGADYRFFVQVDFDALLLCLSYLSDTALGKVLERPESHTPKLWMVHKMRNELVTR 225          
BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: UPI001987ABA0 (Uncharacterized protein n=2 Tax=Actibacterium pelagium TaxID=2029103 RepID=UPI001987ABA0)

HSP 1 Score: 65.9 bits (159), Expect = 6.510e-11
Identity = 33/75 (44.00%), Postives = 52/75 (69.33%), Query Frame = 0
Query:    8 RLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 82
            R+++ +AR+G+ SRREAER++EAG +T+N   +++PALNV   +++ V G+PL  PE   P +WM  K  G + T
Sbjct:   20 RIAKVLARAGVASRREAERMIEAGRVTVNGKIIDSPALNVTSAHVITVDGKPLAEPE--PPRIWMYHKPTGLVTT 92          
BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: A0A1G8PKU4_9RHOB (Pseudouridine synthase n=1 Tax=Lutimaribacter saemankumensis TaxID=490829 RepID=A0A1G8PKU4_9RHOB)

HSP 1 Score: 64.3 bits (155), Expect = 2.430e-10
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 0
Query:    8 RLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 82
            R+++ IAR+G  SRREAERL+EAG +T+N   +++PALNV  R  + V G PL  PE   P LW+  K  G + T
Sbjct:   10 RIAKVIARAGRASRREAERLIEAGRVTVNGKKIDSPALNVTARDRITVDGEPLTAPE--PPRLWLYHKPTGLVTT 82          
BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: A0A037ZJ70_9RHOB (Pseudouridine synthase n=1 Tax=Actibacterium mucosum KCTC 23349 TaxID=1454373 RepID=A0A037ZJ70_9RHOB)

HSP 1 Score: 63.9 bits (154), Expect = 2.990e-10
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 0
Query:    8 RLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 82
            R+++ +AR+G+ SRREAER++EAG +T+N   +++PALNV  +  + V G+PL  PE   P LW+  K  G + T
Sbjct:   10 RIAKVLARAGVASRREAERMIEAGRVTVNGKAIDSPALNVTAKDRITVDGKPLAEPEK--PRLWLYHKPAGLVTT 82          
BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: A0A3M2E3L3_9PROT (Pseudouridine synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2E3L3_9PROT)

HSP 1 Score: 63.9 bits (154), Expect = 3.300e-10
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 0
Query:    8 RLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 82
            R+++ ++R+G+ SRREAERL+EAG +++N T + +PALNVG    ++V GRP+  PE   P LW   K  G + T
Sbjct:   23 RIAKVLSRAGVASRREAERLIEAGRVSVNGTVITSPALNVGPDDRIEVDGRPIAAPE--PPRLWRLYKPTGIVTT 95          
BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: A0A1H0H3M2_9RHOB (Pseudouridine synthase n=1 Tax=Lutimaribacter pacificus TaxID=391948 RepID=A0A1H0H3M2_9RHOB)

HSP 1 Score: 63.5 bits (153), Expect = 4.660e-10
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 0
Query:    8 RLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 82
            R+++ IAR+G  SRREAERL+EAG +T+N   +++PALNV     + V G+PL  PE   P LW+  K  G + T
Sbjct:   10 RIAKVIARAGRASRREAERLIEAGRVTVNGKQIDSPALNVTANDAITVDGKPLAPPE--PPRLWLYHKPAGLVTT 82          
BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: UPI000FD84D24 (pseudouridine synthase n=1 Tax=Solirhodobacter olei TaxID=2493082 RepID=UPI000FD84D24)

HSP 1 Score: 63.9 bits (154), Expect = 4.880e-10
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0
Query:    2 KDVFMMRLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 82
            +D    R+++ +AR+G+ SRREAERL+EAG++T+N   +++PALNV  R  + V+G+PL  P+     LW+  K  G LVT
Sbjct:    4 QDTSGERIAKVLARAGVASRREAERLIEAGLVTVNGKVIDSPALNVTARDRIMVEGKPL--PQREPARLWLYYKPLG-LVT 81          
BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: A0A2E2DYS5_9PROT (Pseudouridine synthase n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E2DYS5_9PROT)

HSP 1 Score: 63.5 bits (153), Expect = 6.580e-10
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 0
Query:    8 RLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 82
            RL++RIAR+G+ SRR+AER +E G +++N T +++PALNVG   IV V G+PL  PE     LW   K  G +VT
Sbjct:   15 RLAKRIARAGLCSRRDAERWIEDGRVSVNGTLIDSPALNVGPDDIVVVDGKPL--PEAQAARLWRYNKPPGLVVT 87          
BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: UPI000A172534 (rRNA pseudouridine synthase n=1 Tax=Planktotalea arctica TaxID=1481893 RepID=UPI000A172534)

HSP 1 Score: 63.2 bits (152), Expect = 8.500e-10
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 0
Query:    8 RLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 82
            R+++ +AR+G+ SRREAER++EAG + +N   +++PALNV +R  + V G+P+  PE   P LWM  K  G + T
Sbjct:   10 RIAKVLARAGVASRREAERMIEAGRIAVNGKVIDSPALNVDVRARITVDGKPMTPPE--PPRLWMYHKPPGLVTT 82          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDE8_ECTSI5.290e-2358.00RNA pseudouridylate synthase domain-containing pro... [more]
A0A6H5J9J6_9PHAE4.800e-2149.15S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
UPI001987ABA06.510e-1144.00Uncharacterized protein n=2 Tax=Actibacterium pela... [more]
A0A1G8PKU4_9RHOB2.430e-1048.00Pseudouridine synthase n=1 Tax=Lutimaribacter saem... [more]
A0A037ZJ70_9RHOB2.990e-1044.00Pseudouridine synthase n=1 Tax=Actibacterium mucos... [more]
A0A3M2E3L3_9PROT3.300e-1045.33Pseudouridine synthase n=1 Tax=Alphaproteobacteria... [more]
A0A1H0H3M2_9RHOB4.660e-1046.67Pseudouridine synthase n=1 Tax=Lutimaribacter paci... [more]
UPI000FD84D244.880e-1044.44pseudouridine synthase n=1 Tax=Solirhodobacter ole... [more]
A0A2E2DYS5_9PROT6.580e-1049.33Pseudouridine synthase n=3 Tax=Rhodospirillales Ta... [more]
UPI000A1725348.500e-1044.00rRNA pseudouridine synthase n=1 Tax=Planktotalea a... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 7..68
e-value: 0.0034
score: 26.6
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 7..65
score: 8.951
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 6..67
e-value: 4.1E-12
score: 47.3
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 7..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17708contigL-elsbetiae_contig17708:2248..2780 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17708.5027.1mRNA_L-elsbetiae_contig17708.5027.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig17708 2144..2780 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig17708.5027.1 ID=prot_L-elsbetiae_contig17708.5027.1|Name=mRNA_L-elsbetiae_contig17708.5027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
MKDVFMMRLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLR
YIVKVKGRPLERPENHTPDLWMTLKTRGELVTR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR036986S4_RNA-bd_sf