mRNA_L-elsbetiae_contig17708.5027.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17708.5027.1
Unique NamemRNA_L-elsbetiae_contig17708.5027.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.970e-22
Identity = 58/100 (58.00%), Postives = 67/100 (67.00%), Query Frame = 3 
Query:  108 KDVFMMRLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKV------------------KGRPLERPENHTPDLWMTLKTRGELVTR 353
            KD  +MRLSRRIARSG+ SRREAER+VEAGV+ +N   V+TPALNVG R IVKV                  +G+ LERPE+HTP LWM  K R ELVTR
Sbjct:  108 KDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFQQPGNGTDCFTFVQGKVLERPESHTPKLWMVHKMRNELVTR 207
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BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 8.920e-21
Identity = 58/120 (48.33%), Postives = 68/120 (56.67%), Query Frame = 3 
Query:  102 QMKDVFMMRLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVK------------------------------------GRPLERPENHTPDLWMTLKTRGELVTR 353
            ++KD  +MRLSRRIARSG+ SRREAER+VEAGV+ +N   V+TPALNVG R IVKV                                     G+ LERPE+HTP LWM  K R ELVTR
Sbjct:  106 KIKDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFLQLGNGADYRFFVQVDFDALLLCLSYLSDTALGKVLERPESHTPKLWMVHKMRNELVTR 225
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BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: UPI001987ABA0 (Uncharacterized protein n=2 Tax=Actibacterium pelagium TaxID=2029103 RepID=UPI001987ABA0)

HSP 1 Score: 65.9 bits (159), Expect = 2.150e-10
Identity = 33/75 (44.00%), Postives = 52/75 (69.33%), Query Frame = 3 
Query:  126 RLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 350
            R+++ +AR+G+ SRREAER++EAG +T+N   +++PALNV   +++ V G+PL  PE   P +WM  K  G + T
Sbjct:   20 RIAKVLARAGVASRREAERMIEAGRVTVNGKIIDSPALNVTSAHVITVDGKPLAEPE--PPRIWMYHKPTGLVTT 92
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BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: A0A1G8PKU4_9RHOB (Pseudouridine synthase n=1 Tax=Lutimaribacter saemankumensis TaxID=490829 RepID=A0A1G8PKU4_9RHOB)

HSP 1 Score: 64.3 bits (155), Expect = 7.990e-10
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 3 
Query:  126 RLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 350
            R+++ IAR+G  SRREAERL+EAG +T+N   +++PALNV  R  + V G PL  PE   P LW+  K  G + T
Sbjct:   10 RIAKVIARAGRASRREAERLIEAGRVTVNGKKIDSPALNVTARDRITVDGEPLTAPE--PPRLWLYHKPTGLVTT 82
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BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: A0A037ZJ70_9RHOB (Pseudouridine synthase n=1 Tax=Actibacterium mucosum KCTC 23349 TaxID=1454373 RepID=A0A037ZJ70_9RHOB)

HSP 1 Score: 63.9 bits (154), Expect = 9.790e-10
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 3 
Query:  126 RLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 350
            R+++ +AR+G+ SRREAER++EAG +T+N   +++PALNV  +  + V G+PL  PE   P LW+  K  G + T
Sbjct:   10 RIAKVLARAGVASRREAERMIEAGRVTVNGKAIDSPALNVTAKDRITVDGKPLAEPEK--PRLWLYHKPAGLVTT 82
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BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: A0A3M2E3L3_9PROT (Pseudouridine synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2E3L3_9PROT)

HSP 1 Score: 63.9 bits (154), Expect = 1.080e-9
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 3 
Query:  126 RLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 350
            R+++ ++R+G+ SRREAERL+EAG +++N T + +PALNVG    ++V GRP+  PE   P LW   K  G + T
Sbjct:   23 RIAKVLSRAGVASRREAERLIEAGRVSVNGTVITSPALNVGPDDRIEVDGRPIAAPE--PPRLWRLYKPTGIVTT 95
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BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: UPI000FD84D24 (pseudouridine synthase n=1 Tax=Solirhodobacter olei TaxID=2493082 RepID=UPI000FD84D24)

HSP 1 Score: 64.3 bits (155), Expect = 1.190e-9
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 3 
Query:   99 LQMKDVFMMRLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 350
            +  +D    R+++ +AR+G+ SRREAERL+EAG++T+N   +++PALNV  R  + V+G+PL  P+     LW+  K  G LVT
Sbjct:    1 MDKQDTSGERIAKVLARAGVASRREAERLIEAGLVTVNGKVIDSPALNVTARDRIMVEGKPL--PQREPARLWLYYKPLG-LVT 81
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BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: A0A1H0H3M2_9RHOB (Pseudouridine synthase n=1 Tax=Lutimaribacter pacificus TaxID=391948 RepID=A0A1H0H3M2_9RHOB)

HSP 1 Score: 63.5 bits (153), Expect = 1.520e-9
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 3 
Query:  126 RLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 350
            R+++ IAR+G  SRREAERL+EAG +T+N   +++PALNV     + V G+PL  PE   P LW+  K  G + T
Sbjct:   10 RIAKVIARAGRASRREAERLIEAGRVTVNGKQIDSPALNVTANDAITVDGKPLAPPE--PPRLWLYHKPAGLVTT 82
[Close]
BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: A0A2E2DYS5_9PROT (Pseudouridine synthase n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E2DYS5_9PROT)

HSP 1 Score: 63.5 bits (153), Expect = 2.190e-9
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 3 
Query:  126 RLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 350
            RL++RIAR+G+ SRR+AER +E G +++N T +++PALNVG   IV V G+PL  PE     LW   K  G +VT
Sbjct:   15 RLAKRIARAGLCSRRDAERWIEDGRVSVNGTLIDSPALNVGPDDIVVVDGKPL--PEAQAARLWRYNKPPGLVVT 87
[Close]
BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Match: UPI000A172534 (rRNA pseudouridine synthase n=1 Tax=Planktotalea arctica TaxID=1481893 RepID=UPI000A172534)

HSP 1 Score: 63.2 bits (152), Expect = 2.810e-9
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 3 
Query:  126 RLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLRYIVKVKGRPLERPENHTPDLWMTLKTRGELVT 350
            R+++ +AR+G+ SRREAER++EAG + +N   +++PALNV +R  + V G+P+  PE   P LWM  K  G + T
Sbjct:   10 RIAKVLARAGVASRREAERMIEAGRIAVNGKVIDSPALNVDVRARITVDGKPMTPPE--PPRLWMYHKPPGLVTT 82
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17708.5027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDE8_ECTSI1.970e-2258.00RNA pseudouridylate synthase domain-containing pro... [more]
A0A6H5J9J6_9PHAE8.920e-2148.33S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
UPI001987ABA02.150e-1044.00Uncharacterized protein n=2 Tax=Actibacterium pela... [more]
A0A1G8PKU4_9RHOB7.990e-1048.00Pseudouridine synthase n=1 Tax=Lutimaribacter saem... [more]
A0A037ZJ70_9RHOB9.790e-1044.00Pseudouridine synthase n=1 Tax=Actibacterium mucos... [more]
A0A3M2E3L3_9PROT1.080e-945.33Pseudouridine synthase n=1 Tax=Alphaproteobacteria... [more]
UPI000FD84D241.190e-942.86pseudouridine synthase n=1 Tax=Solirhodobacter ole... [more]
A0A1H0H3M2_9RHOB1.520e-946.67Pseudouridine synthase n=1 Tax=Lutimaribacter paci... [more]
A0A2E2DYS5_9PROT2.190e-949.33Pseudouridine synthase n=3 Tax=Rhodospirillales Ta... [more]
UPI000A1725342.810e-944.00rRNA pseudouridine synthase n=1 Tax=Planktotalea a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17708contigL-elsbetiae_contig17708:2144..2780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.3
Seed ortholog evalue3e-08
Seed eggNOG ortholog1305735.JAFT01000005_gene2069
Preferred namerluB
KEGG koko:K06178,ko:K06181,ko:K06182,ko:K06183
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases
EggNOG OGs1MUCE@1224,2PDID@252301,2TQP2@28211,COG1187@1,COG1187@2
EC5.4.99.19,5.4.99.20,5.4.99.21,5.4.99.22
COG Functional cat.J
Best tax levelOceanicola
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons2
Model size354
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17708.5027.1prot_L-elsbetiae_contig17708.5027.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17708 2248..2780 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.6703994-UTR-L-elsbetiae_contig17708:2143..22471622815738.6703994-UTR-L-elsbetiae_contig17708:2143..2247Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17708 2144..2247 +
1691683070.8230665-UTR-L-elsbetiae_contig17708:2143..22471691683070.8230665-UTR-L-elsbetiae_contig17708:2143..2247Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17708 2144..2247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.685745-CDS-L-elsbetiae_contig17708:2247..24151622815738.685745-CDS-L-elsbetiae_contig17708:2247..2415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17708 2248..2415 +
1691683070.8348827-CDS-L-elsbetiae_contig17708:2247..24151691683070.8348827-CDS-L-elsbetiae_contig17708:2247..2415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17708 2248..2415 +
1622815738.699781-CDS-L-elsbetiae_contig17708:2699..27801622815738.699781-CDS-L-elsbetiae_contig17708:2699..2780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17708 2700..2780 +
1691683070.8495111-CDS-L-elsbetiae_contig17708:2699..27801691683070.8495111-CDS-L-elsbetiae_contig17708:2699..2780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17708 2700..2780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17708.5027.1

>prot_L-elsbetiae_contig17708.5027.1 ID=prot_L-elsbetiae_contig17708.5027.1|Name=mRNA_L-elsbetiae_contig17708.5027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
MKDVFMMRLSRRIARSGMTSRREAERLVEAGVMTMNETPVETPALNVGLR
YIVKVKGRPLERPENHTPDLWMTLKTRGELVTR
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mRNA from alignment at L-elsbetiae_contig17708:2144..2780+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17708.5027.1 ID=mRNA_L-elsbetiae_contig17708.5027.1|Name=mRNA_L-elsbetiae_contig17708.5027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=637bp|location=Sequence derived from alignment at L-elsbetiae_contig17708:2144..2780+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTAGTTTCCTGGGGACGGAGGAGGAGGAGGAGGAGGAAGAGCACAGC
GCCTCCGGCGAGGACTGAAGCGAGGGGGGTGTGGACGAGATACTGCAATT
GCAGATGAAGGACGTTTTCATGATGCGCCTGTCTCGCCGTATCGCGAGGT
CCGGCATGACTTCCCGTCGAGAGGCCGAGCGCCTGGTGGAGGCGGGGGTG
ATGACGATGAACGAAACACCGGTGGAGACTCCGGCGCTGAACGTGGGGCT
TCGATACATCGTCAAAGTCAAGGTTAGGTCAGGCTCTTTGTTATCGTTTT
GATTTGGGCACAGTAGGGTACGGAGCGGGCCGGCACTCCGCTCAGTGGTA
TGCGCCCAATCAGATTGGATCAAGATCGATCCGTTGATCAGCGAAATCAA
ACAGATATGGCTTTTAGTATAGGGTTTAAGCATCTACGCTAGCCAGGCTG
TTGAGCACATCCCGCCACCTTGTTTGATTGGTTGCCTGTTTGAATGTTTT
TTTTGGGTATTTTTTGTTAATCGTTTGTTGTCCATGTCGATGTTGATGGC
CGCCAGGGGAGACCACTGGAGCGGCCGGAGAACCACACGCCCGACCTGTG
GATGACGCTCAAGACTAGGGGCGAGCTTGTCACGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17708:2144..2780+

>mRNA_L-elsbetiae_contig17708.5027.1 ID=mRNA_L-elsbetiae_contig17708.5027.1|Name=mRNA_L-elsbetiae_contig17708.5027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig17708:2144..2780+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGACGTTTTCATGATGCGCCTGTCTCGCCGTATCGCGAGGTCCGG
CATGACTTCCCGTCGAGAGGCCGAGCGCCTGGTGGAGGCGGGGGTGATGA
CGATGAACGAAACACCGGTGGAGACTCCGGCGCTGAACGTGGGGCTTCGA
TACATCGTCAAAGTCAAGATGAAGGACGTTTTCATGATGCGCCTGTCTCG
CCGTATCGCGAGGTCCGGCATGACTTCCCGTCGAGAGGCCGAGCGCCTGG
TGGAGGCGGGGGTGATGACGATGAACGAAACACCGGTGGAGACTCCGGCG
CTGAACGTGGGGCTTCGATACATCGTCAAAGTCAAGGGGAGACCACTGGA
GCGGCCGGAGAACCACACGCCCGACCTGTGGATGACGCTCAAGACTAGGG
GCGAGCTTGTCACGAGGGGGAGACCACTGGAGCGGCCGGAGAACCACACG
CCCGACCTGTGGATGACGCTCAAGACTAGGGGCGAGCTTGTCACGAGG
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