prot_L-elsbetiae_contig17702.5025.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig17702.5025.1
Unique Nameprot_L-elsbetiae_contig17702.5025.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length114
Homology
BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A6H5JYA8_9PHAE (Sm domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYA8_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.830e-26
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0
Query:   64 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 114
            PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVL CLDGYMNIAMEQT
Sbjct:   64 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT 114          
BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A448Z717_9STRA (Sm domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z717_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.900e-22
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 0
Query:   66 QTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 114
            QTGG KRSPSDFLK+VLGRP +VKLNSGI+YRGVLACLDGY+NIAMEQT
Sbjct:   20 QTGGKKRSPSDFLKSVLGRPAIVKLNSGIEYRGVLACLDGYLNIAMEQT 68          
BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A7S2IZG2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IZG2_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 1.970e-20
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 0
Query:   71 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 114
            K +PSDFLKTVLGRPVVVKLNSG+DYRGVLACLDGYMNIAMEQT
Sbjct:   30 KSNPSDFLKTVLGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQT 73          
BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: B4FCE3_MAIZE (Sm-like protein LSM6A n=20 Tax=Poaceae TaxID=4479 RepID=B4FCE3_MAIZE)

HSP 1 Score: 87.8 bits (216), Expect = 2.120e-20
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0
Query:   64 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 114
            P   GG  ++PSDFLK++ GRPVVVKLNSG+DYRG+LACLDGYMNIAMEQT
Sbjct:    9 PGSGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT 59          
BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A0G4IMQ5_PLABS (Sm domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IMQ5_PLABS)

HSP 1 Score: 87.0 bits (214), Expect = 2.680e-20
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 0
Query:   71 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 114
            KRSP+DFLKTVLGRPV VKLNSG++YRGVLACLDGYMNIAMEQT
Sbjct:    3 KRSPADFLKTVLGRPVYVKLNSGVEYRGVLACLDGYMNIAMEQT 46          
BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: I1I9Y0_BRADI (Sm domain-containing protein n=2 Tax=Poaceae TaxID=4479 RepID=I1I9Y0_BRADI)

HSP 1 Score: 86.7 bits (213), Expect = 6.560e-20
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 0
Query:   65 AQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 114
            A +GG  ++PSDFLK++ GRPVVVKLNSG+DYRGVLACLDGYMNIAMEQT
Sbjct:   13 AGSGGPVKTPSDFLKSIRGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQT 62          
BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A7S3HE42_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HE42_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.120e-20
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 0
Query:   70 GKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 114
            GKR+PSDF+K VLGRPV+VKLN+G DYRGVLACLDGYMNIAMEQT
Sbjct:   23 GKRAPSDFIKQVLGRPVIVKLNNGTDYRGVLACLDGYMNIAMEQT 67          
BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A0D9VGA6_9ORYZ (Sm domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VGA6_9ORYZ)

HSP 1 Score: 85.9 bits (211), Expect = 1.090e-19
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 0
Query:   68 GGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 114
            GG  ++PSDFLK++ GRPVVVKLNSG+DYRG+LACLDGYMNIAMEQT
Sbjct:   14 GGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT 60          
BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A8J9X496_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X496_PHATR)

HSP 1 Score: 85.1 bits (209), Expect = 1.120e-19
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 0
Query:   71 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 114
            KRSPSDFLK+VLGRPV VKLNSGI+YRG+LACLDGY+NIAMEQT
Sbjct:    2 KRSPSDFLKSVLGRPVQVKLNSGIEYRGILACLDGYLNIAMEQT 45          
BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A0L8G189_OCTBM (Sm domain-containing protein n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8G189_OCTBM)

HSP 1 Score: 85.5 bits (210), Expect = 1.140e-19
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 0
Query:   69 GGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 114
            G K++PSDFLK ++GRPVVVKLNSG+DYRGVLACLDGYMNIA+EQT
Sbjct:    3 GRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQT 48          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYA8_9PHAE1.830e-2698.04Sm domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A448Z717_9STRA2.900e-2287.76Sm domain-containing protein n=1 Tax=Pseudo-nitzsc... [more]
A0A7S2IZG2_9EUKA1.970e-2093.18Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
B4FCE3_MAIZE2.120e-2076.47Sm-like protein LSM6A n=20 Tax=Poaceae TaxID=4479 ... [more]
A0A0G4IMQ5_PLABS2.680e-2090.91Sm domain-containing protein n=1 Tax=Plasmodiophor... [more]
I1I9Y0_BRADI6.560e-2080.00Sm domain-containing protein n=2 Tax=Poaceae TaxID... [more]
A0A7S3HE42_9STRA7.120e-2086.67Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0D9VGA6_9ORYZ1.090e-1980.85Sm domain-containing protein n=1 Tax=Leersia perri... [more]
A0A8J9X496_PHATR1.120e-1988.64Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A0L8G189_OCTBM1.140e-1982.61Sm domain-containing protein n=2 Tax=Octopus TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 76..113
e-value: 1.3E-7
score: 31.2
NoneNo IPR availableGENE3D2.30.30.100coord: 66..114
e-value: 7.5E-17
score: 62.6
NoneNo IPR availablePANTHERPTHR11021:SF7coord: 63..114
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 63..114
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 74..113

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17702contigL-elsbetiae_contig17702:598..2453 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17702.5025.1mRNA_L-elsbetiae_contig17702.5025.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig17702 598..2453 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig17702.5025.1 ID=prot_L-elsbetiae_contig17702.5025.1|Name=mRNA_L-elsbetiae_contig17702.5025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MTDSTTPPPPPPRTEAEDAKENGEPEEEEEEEDVPMPPAPPAPSAAVTAA
APPATVAAVAVAAPAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVL
ACLDGYMNIAMEQT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR010920LSM_dom_sf