mRNA_L-elsbetiae_contig17702.5025.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17702.5025.1
Unique NamemRNA_L-elsbetiae_contig17702.5025.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A6H5JYA8_9PHAE (Sm domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYA8_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.830e-26
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:  190 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 342
            PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVL CLDGYMNIAMEQT
Sbjct:   64 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT 114
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BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A448Z717_9STRA (Sm domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z717_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.900e-22
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:  196 QTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 342
            QTGG KRSPSDFLK+VLGRP +VKLNSGI+YRGVLACLDGY+NIAMEQT
Sbjct:   20 QTGGKKRSPSDFLKSVLGRPAIVKLNSGIEYRGVLACLDGYLNIAMEQT 68
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BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A7S2IZG2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IZG2_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 1.970e-20
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  211 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 342
            K +PSDFLKTVLGRPVVVKLNSG+DYRGVLACLDGYMNIAMEQT
Sbjct:   30 KSNPSDFLKTVLGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQT 73
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BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: B4FCE3_MAIZE (Sm-like protein LSM6A n=20 Tax=Poaceae TaxID=4479 RepID=B4FCE3_MAIZE)

HSP 1 Score: 87.8 bits (216), Expect = 2.120e-20
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:  190 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 342
            P   GG  ++PSDFLK++ GRPVVVKLNSG+DYRG+LACLDGYMNIAMEQT
Sbjct:    9 PGSGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT 59
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BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A0G4IMQ5_PLABS (Sm domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IMQ5_PLABS)

HSP 1 Score: 87.0 bits (214), Expect = 2.680e-20
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  211 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 342
            KRSP+DFLKTVLGRPV VKLNSG++YRGVLACLDGYMNIAMEQT
Sbjct:    3 KRSPADFLKTVLGRPVYVKLNSGVEYRGVLACLDGYMNIAMEQT 46
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BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: I1I9Y0_BRADI (Sm domain-containing protein n=2 Tax=Poaceae TaxID=4479 RepID=I1I9Y0_BRADI)

HSP 1 Score: 86.7 bits (213), Expect = 6.560e-20
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:  193 AQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 342
            A +GG  ++PSDFLK++ GRPVVVKLNSG+DYRGVLACLDGYMNIAMEQT
Sbjct:   13 AGSGGPVKTPSDFLKSIRGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQT 62
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BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A7S3HE42_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HE42_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.120e-20
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:  208 GKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 342
            GKR+PSDF+K VLGRPV+VKLN+G DYRGVLACLDGYMNIAMEQT
Sbjct:   23 GKRAPSDFIKQVLGRPVIVKLNNGTDYRGVLACLDGYMNIAMEQT 67
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BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A0D9VGA6_9ORYZ (Sm domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VGA6_9ORYZ)

HSP 1 Score: 85.9 bits (211), Expect = 1.090e-19
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:  202 GGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 342
            GG  ++PSDFLK++ GRPVVVKLNSG+DYRG+LACLDGYMNIAMEQT
Sbjct:   14 GGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT 60
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BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A8J9X496_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X496_PHATR)

HSP 1 Score: 85.1 bits (209), Expect = 1.120e-19
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  211 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 342
            KRSPSDFLK+VLGRPV VKLNSGI+YRG+LACLDGY+NIAMEQT
Sbjct:    2 KRSPSDFLKSVLGRPVQVKLNSGIEYRGILACLDGYLNIAMEQT 45
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BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Match: A0A0L8G189_OCTBM (Sm domain-containing protein n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8G189_OCTBM)

HSP 1 Score: 85.5 bits (210), Expect = 1.140e-19
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:  205 GGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLACLDGYMNIAMEQT 342
            G K++PSDFLK ++GRPVVVKLNSG+DYRGVLACLDGYMNIA+EQT
Sbjct:    3 GRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQT 48
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17702.5025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYA8_9PHAE1.830e-2698.04Sm domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A448Z717_9STRA2.900e-2287.76Sm domain-containing protein n=1 Tax=Pseudo-nitzsc... [more]
A0A7S2IZG2_9EUKA1.970e-2093.18Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
B4FCE3_MAIZE2.120e-2076.47Sm-like protein LSM6A n=20 Tax=Poaceae TaxID=4479 ... [more]
A0A0G4IMQ5_PLABS2.680e-2090.91Sm domain-containing protein n=1 Tax=Plasmodiophor... [more]
I1I9Y0_BRADI6.560e-2080.00Sm domain-containing protein n=2 Tax=Poaceae TaxID... [more]
A0A7S3HE42_9STRA7.120e-2086.67Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0D9VGA6_9ORYZ1.090e-1980.85Sm domain-containing protein n=1 Tax=Leersia perri... [more]
A0A8J9X496_PHATR1.120e-1988.64Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A0L8G189_OCTBM1.140e-1982.61Sm domain-containing protein n=2 Tax=Octopus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17702contigL-elsbetiae_contig17702:598..2453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog2880.D7G3Y6
Preferred nameLSM6
KEGG rclassRC00004
KEGG koko:K12625,ko:K12769,ko:K13356
KEGG ReactionR09470
KEGG Pathwayko00073,ko03018,ko03040,ko04113,ko04146,ko04212,map00073,map03018,map03040,map04113,map04146,map04212
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0046982,GO:0046983,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1990726,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG1958@1,KOG1783@2759
EC1.2.1.84
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03019,ko03041
Ec32 ortholog descriptionSm-like protein LSm6
Ec32 orthologEc-19_000790.1
Exons2
Model size342
Cds size342
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.5908277-CDS-L-elsbetiae_contig17702:597..6471622815738.5908277-CDS-L-elsbetiae_contig17702:597..647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17702 598..647 -
1691683070.7833385-CDS-L-elsbetiae_contig17702:597..6471691683070.7833385-CDS-L-elsbetiae_contig17702:597..647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17702 598..647 -
1622815738.602394-CDS-L-elsbetiae_contig17702:2161..24531622815738.602394-CDS-L-elsbetiae_contig17702:2161..2453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17702 2162..2453 -
1691683070.7996607-CDS-L-elsbetiae_contig17702:2161..24531691683070.7996607-CDS-L-elsbetiae_contig17702:2161..2453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17702 2162..2453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17702.5025.1prot_L-elsbetiae_contig17702.5025.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17702 598..2453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17702.5025.1

>prot_L-elsbetiae_contig17702.5025.1 ID=prot_L-elsbetiae_contig17702.5025.1|Name=mRNA_L-elsbetiae_contig17702.5025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MTDSTTPPPPPPRTEAEDAKENGEPEEEEEEEDVPMPPAPPAPSAAVTAA
APPATVAAVAVAAPAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVL
ACLDGYMNIAMEQT
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mRNA from alignment at L-elsbetiae_contig17702:598..2453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17702.5025.1 ID=mRNA_L-elsbetiae_contig17702.5025.1|Name=mRNA_L-elsbetiae_contig17702.5025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1856bp|location=Sequence derived from alignment at L-elsbetiae_contig17702:598..2453- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGACTCAACGACGCCACCACCACCGCCGCCGCGTACGGAAGCAGA
AGATGCAAAAGAAAATGGTGAACCGGAGGAGGAGGAAGAGGAAGAAGACG
TACCGATGCCACCAGCCCCGCCTGCGCCATCAGCCGCGGTCACAGCAGCA
GCACCACCGGCAACGGTGGCGGCGGTAGCTGTGGCAGCGCCCGCACAGAC
TGGAGGAGGGAAGAGATCTCCCAGTGATTTCCTTAAGACTGTTCTCGGGA
GACCTGTGGTGGTGAAGCTCAATTCAGGGATAGATTACAGGGGTGAGAGA
TTTTGGGTACGAAAATATCTGCACCCAGGGCACCGAGGAAGAAATGGGAA
GGATCGCTCTCGGCGACGATCTTATCCTCAGAGACTGCCGGCAGCGTTTT
GCAGACAGGACGGGGTGCTCATCTGTTGGCCTTGCGTTTTTTGCACTTAT
CTATGGTTATGCTCCTAAATAATTTGGAGCTTGCCGGTTTTGGATGCCTG
CTGCCCGGGCGGCCTTCTTGCCGCGTTTTTCGTGCAACACGTTTTGAAAT
GACACTAAATACCTGTACAACCGCCGTAGGTGACAAAAGATACCACACCC
CCTGGACTGAATTTTAAAGCTCTATTACTCCGTAACGAAGAACCCAGCAG
CACTAAACGACACATTTTCGGACAACCCTCGACTAGAGCTTTCCAACGCT
GCCCCTTCTGGCACTGGCACTCTTCTTGCCGAAGAGGAATCGAGCTTCGA
ATATCTTGTGTGACCTACGGTACACTATTGTACATGTATCTAGACTGTAA
ATACGTAGATAAGGGCAACGGCCAACAAGGTATACCTTGTGCTTTTCCGG
CCAAAAGAGGGTGCTCGGTAGGAATCACTGTGAACACAGAATAGGACTCC
CTGTTTTCGCCGGACAAGTACAAGGTATACCTTTAAAATCCCTGCCAGGG
CACCCTCCTTTGGCCGGAAAAGCACAAGGTTGTACCTTTGCGTGGCCACT
CAACTCCTGGCTACACCTTGTTTTGCCGCTCGTTCACCCTCTTTCGGCCG
GATGACCGGGCTCTTTGTCCAGGAAAAGGGTCTTGGTGCGACCTGCCTGA
TACATAGCCCACGAAAAAAAGTTGACCCTCCTGCATTTTCTCGTGCGGAT
GCCCCCTAAACCAAATGCGTTACTCCCCTTACCCCAACAAGGCCAGCTGA
AAAGTCCCGCGTCACACTAATGTACAGACCAGGTCAGCTGCAGCCGTGCG
CAACAGTTGCACGGTGGAGTGTCTGCCCCGCCCCCGAGCATGTAGATAGC
ATGTAGAATATGCACAACATTGTTGACTTCGTTAACGCTGTGCACGGGTT
AGAGCATGTAGATTGTGTACATTGTTGACTTTGTTAGCGCTGTGCACGGG
CTAGACTCTACTTGAATAATGGTCATGGGATAGCTAGCCTCCACGACCCT
TCGTGAGGTTTGGCTTGGTAGCGGGCCCTGCACGTTTAAGTCCGGTACCA
CACATACCCTGCTTTGGCCGCCTGACCACAAGGTAAAACCTTGTTTTGGC
CGTTCCCCAAGACACAACACTGCTGTGCACGTGCGTCGCTGCTTTGGTGT
GCCGGGTACACAAGCCTGCCGCCGTGACCCTATAGCGTGCATCGCCGGCG
GTGCTGTTAGCCTTTTTTGTTCTTGCAAGGACTTTCGCATCGAAACGTGC
TGTTGGGGCACCAACCTTAAGCGGCCCAACTCTCACCAACACCCCCTCCT
ACATGTGCCCCGACCGCGGTCGTGTGTCCGCAACACTCCGTATACTGCGT
GCATAGGTGTGTTGGCGTGCTTGGACGGTTACATGAACATCGCGATGGAG
CAGACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17702:598..2453-

>mRNA_L-elsbetiae_contig17702.5025.1 ID=mRNA_L-elsbetiae_contig17702.5025.1|Name=mRNA_L-elsbetiae_contig17702.5025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig17702:598..2453- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGACTCAACGACGCCACCACCACCGCCGCCGCGTACGGAAGCAGA
AGATGCAAAAGAAAATGGTGAACCGGAGGAGGAGGAAGAGGAAGAAGACG
TACCGATGCCACCAGCCCCGCCTGCGCCATCAGCCGCGGTCACAGCAGCA
GCACCACCGGCAACGGTGGCGGCGGTAGCTGTGGCAGCGCCCGCACAGAC
TGGAGGAGGGAAGAGATCTCCCAGTGATTTCCTTAAGACTGTTCTCGGGA
GACCTGTGGTGGTGAAGCTCAATTCAGGGATAGATTACAGGGATGACGGA
CTCAACGACGCCACCACCACCGCCGCCGCGTACGGAAGCAGAAGATGCAA
AAGAAAATGGTGAACCGGAGGAGGAGGAAGAGGAAGAAGACGTACCGATG
CCACCAGCCCCGCCTGCGCCATCAGCCGCGGTCACAGCAGCAGCACCACC
GGCAACGGTGGCGGCGGTAGCTGTGGCAGCGCCCGCACAGACTGGAGGAG
GGAAGAGATCTCCCAGTGATTTCCTTAAGACTGTTCTCGGGAGACCTGTG
GTGGTGAAGCTCAATTCAGGGATAGATTACAGGGGTGTGTTGGCGTGCTT
GGACGGTTACATGAACATCGCGATGGAGCAGACAGTGTGTTGGCGTGCTT
GGACGGTTACATGAACATCGCGATGGAGCAGACA
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