prot_L-elsbetiae_contig1768.4998.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1768.4998.1
Unique Nameprot_L-elsbetiae_contig1768.4998.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length237
Homology
BLAST of mRNA_L-elsbetiae_contig1768.4998.1 vs. uniprot
Match: A0A6H5JDH5_9PHAE (RPA43_OB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDH5_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 5.170e-105
Identity = 156/181 (86.19%), Postives = 166/181 (91.71%), Query Frame = 0
Query:    1 MATSPFEELDLKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAKEGRIEDEMPHIHFDVKAKAQVFCPRPGHVLEGRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFDLTTREWRRGGG------EVIAVGDDRKFVVTRMHEAAGLISMEGSLEGLPKEEG 175
            MA SPFEE++LKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNE+LGGVLLAVS LSFGDGA+EGRIEDEMPHIHFDVKAKAQVF PRPGHVL+GRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFD+T REW+R  G      EVIAVG D +FVVTRMHEAAGLIS+EGSLEGLPK +G
Sbjct:    1 MAASPFEEVELKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNEALGGVLLAVSNLSFGDGAREGRIEDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFDMTAREWQRSRGGKDGAREVIAVGADTQFVVTRMHEAAGLISIEGSLEGLPKADG 181          
BLAST of mRNA_L-elsbetiae_contig1768.4998.1 vs. uniprot
Match: A0A835Z8S8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S8_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.710e-42
Identity = 83/192 (43.23%), Postives = 113/192 (58.85%), Query Frame = 0
Query:    4 SPFEELDLKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAKEGRIEDEMPHIHFDVKAKAQVFCPRPGHVLEGRVNK-------------VTSTHVGMLVCGIFNASV-ASESMGEGFRFDLTTREWRRG--------------GGEVIAVGDDRKFVVTRMHEAAGLISMEGSL 167
            SPFEE+ L +C+SLLP  + DI+  IR+N+Y+ LM YN  +GGV++A+ ++   DG   GRI +EMPH+HF+++A AQVF PR G +L GRV K             V+ THV MLVCGIFNAS+ A E  G G+ +      W R               G + + +G    F V R+H+A GLIS+EG L
Sbjct:   43 SPFEEVSLALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEHHGRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGPDAVEMGTSLDFTVRRLHQAQGLISIEGGL 234          
BLAST of mRNA_L-elsbetiae_contig1768.4998.1 vs. uniprot
Match: A0A4D9D057_9STRA (RPA43_OB domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D057_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.050e-35
Identity = 70/172 (40.70%), Postives = 107/172 (62.21%), Query Frame = 0
Query:    5 PFEELDLKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAKEGRIEDEMPHIHFDVKAKAQVFCPRPGHVLEGRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFDLTTREW-RRGGGEVIAVGDDRKFVVTRMHEAAGLISMEGSLEGLPKEEG 175
            PF+E  +   ++LLP  +G++   I   ++  LM+YN+ +GG+LL +S++ F    +   +  ++PH+H  V+A + VF P PG  L G V KVTSTHV +LV  +FNA++A E M E + FD     W   GG EV+ +G++  F V  +HEAAGLI+++GSL    +EEG
Sbjct:   31 PFQEQRVLFKLALLPDAMGNLEESIHEKLHDMLMKYNQDVGGILLTLSQVRFPPSRRFASVMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYDLFNAAIAREDMPEAYAFDNDREAWVGTGGKEVLGLGEEVAFRVALVHEAAGLIALDGSL----REEG 198          
BLAST of mRNA_L-elsbetiae_contig1768.4998.1 vs. uniprot
Match: A0A024G6Y8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6Y8_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.610e-28
Identity = 60/173 (34.68%), Postives = 100/173 (57.80%), Query Frame = 0
Query:    2 ATSPFEELDLKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAKEGRIEDEMPHIHFDVKAKAQVFCPRPGHVLEGRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFDLTTREWRRGGGEVIAVGDDRKFVVTRMHEAAGLISMEGSLEGLPKEE 174
            A+SPF  + ++  +SL P  + D   GI++ + + +M+YNE+L GV+L    +   +    G I  + P++H  + A A VF PR G +L+ ++NK+ S H+GML  G+FN SVA+  + EGF ++     W    G++I V D     + R+  A G+IS+E S++   KE+
Sbjct:   19 ASSPFVSIKVRHSLSLSPCHLSDPLEGIKQELDESVMQYNETLKGVILCFDSVRLIE--PHGHIISDSPYVHCKIIANALVFQPRQGMLLKAQINKIGSNHIGMLFVGVFNGSVAASELPEGFVYNYHKESWIGNDGDIINVDDIVTVKIQRVRVAGGMISIEASMKVDQKEQ 189          
BLAST of mRNA_L-elsbetiae_contig1768.4998.1 vs. uniprot
Match: A0A2D4BXV9_PYTIN (S1 motif domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXV9_PYTIN)

HSP 1 Score: 117 bits (293), Expect = 2.430e-28
Identity = 63/157 (40.13%), Postives = 92/157 (58.60%), Query Frame = 0
Query:   11 LKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAKEGRIEDEMPHIHFDVKAKAQVFCPRPGHVLEGRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFDLTTREWRRGGGEVIAVGDDRKFVVTRMHEAAGLISMEGSL 167
            ++  VSLLP  IGD   GI + +   LMRY++ L GV+L+ S +     +  G I +E P+IH  V A A VF PR G  L G VNK+ S HVG+L+ G+FN SVA+  + +G+  +     W+   G  I+VG+     V R+H A G+I++E S+
Sbjct:   11 IRQPVSLLPCHIGDARLGIDQEMTALLMRYSDKLEGVILSFSNVRLEKPS--GHILNEQPYIHCKVIADALVFQPRVGMTLSGVVNKIGSNHVGLLIAGVFNGSVAASELPKGYVHNYAEDAWKGADGTTISVGETITVKVARVHVAGGMIAIEASM 165          
BLAST of mRNA_L-elsbetiae_contig1768.4998.1 vs. uniprot
Match: A0A1V9ZJD1_9STRA (RPA43_OB domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJD1_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.720e-28
Identity = 67/174 (38.51%), Postives = 93/174 (53.45%), Query Frame = 0
Query:    4 SPFEELDLKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAK----EGRIEDEMPHIHFDVKAKAQVFCPRPGHVLEGRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFDLTTREWRRGGGEVIAVGDDRKFVVTRMHEAAGLISMEGSLEGLPKE 173
            SPF    L M  SL P  I D   G+   +   LM+Y E + GV+LA       DG K     G I +E P+IH  V  +A VF P+ G  L   VNKV S+H+G+L+ G+FN S+A+  M +G+    +   W    G  IA+  +  F V R+H A G+IS+EGS+ G  K+
Sbjct:    2 SPFVNAKLVMSCSLAPCHIHDAKKGLEEQLNLMLMKYCEPVEGVVLAF------DGIKLLNPYGHIINETPYIHVKVATEALVFRPKAGMTLSANVNKVGSSHIGLLLAGVFNVSIAAADMPKGYAHSYSDDAWINEDGATIALESEVSFTVVRVHVAHGVISIEGSMRGSKKK 169          
BLAST of mRNA_L-elsbetiae_contig1768.4998.1 vs. uniprot
Match: A0A7S1XUY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUY3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 9.820e-28
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 0
Query:    4 SPFEELDLKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAKEGRIEDEMPHIHFDVKAKAQVFCPRPGHVLEGRVNKVTSTHV 103
            SPFE + L++C SLLPS +GD+  G+RR +++ LMRY    GGV++    + F  GA+ GRI DE PHIHFD+ A+A VF P+ G  L G V +V  THV
Sbjct:   34 SPFEVVTLRVCCSLLPSSLGDVPGGVRRQLFRLLMRYLPEAGGVVVGFQNIGFAPGARHGRIHDEEPHIHFDIVARALVFAPQAGLELVGEVQRVAQTHV 133          
BLAST of mRNA_L-elsbetiae_contig1768.4998.1 vs. uniprot
Match: A0A6G0XIV8_9STRA (RPA43_OB domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIV8_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.320e-27
Identity = 65/167 (38.92%), Postives = 94/167 (56.29%), Query Frame = 0
Query:    4 SPFEELDLKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAKEGRIEDEMPHIHFDVKAKAQVFCPRPGHVLEGRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFDLTTREWRRGGGEVIAVGDDRKFVVTRMHEAAGLISMEGSLEGL 170
            SPF +  L M VSL P  I +   G+   + Q LM+Y E + GVLL+ + L   +    G I +E P IH  V A A VF P PG  L   VNK+ S H+G+L+ G+FN S+A+  M  GF  +     W    G  I++ D+ +F V ++HEA G+IS++G+L  +
Sbjct:    3 SPFAKAKLVMSVSLAPYHIQNAKKGLEDQLSQMLMKYCEPVQGVLLSFNSLQMIN--PYGHIINETPFIHVRVAADALVFRPTPGMKLSATVNKIGSNHIGLLLAGVFNVSIAATEMPSGFVHNHFEEAWVGEDGASISLQDEVRFKVLQVHEAHGVISIDGTLRSV 167          
BLAST of mRNA_L-elsbetiae_contig1768.4998.1 vs. uniprot
Match: A0A058ZEH9_FONAL (RPA43_OB domain-containing protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZEH9_FONAL)

HSP 1 Score: 114 bits (284), Expect = 9.530e-27
Identity = 68/182 (37.36%), Postives = 103/182 (56.59%), Query Frame = 0
Query:    2 ATSPFEELDLKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAKE----------GRIEDEMPHIHFDVKAKAQVFCPRPGHVLEGRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFDLTTREWRRG---GGEV-IAVGDDRKFVVTRMHEAAGLISMEGSLEG 169
            A SPF  +   + + LLP+D+GD   GI + +   L+ +++ +GG +L+ S++ F D A +          GRI ++ P IH  V+AK  VF P+ G  L G V K+    VGMLV G+FNAS+ +E++G  F +D +   +R+    G EV IAVG    F V R+    G+++M GSL G
Sbjct:   13 AESPFSMVTANLYMHLLPADMGDPRRGIDQRLNAMLLHHSQHIGGTVLSYSDVQFLDDAGKPASSTKNIVSGRIINDAPFIHVTVRAKFLVFKPKVGSQLVGSVIKIGPDQVGMLVLGLFNASIPTENLGSEFAYDYSEGVYRKASKSGSEVAIAVGTRLAFSVQRLDTVNGILAMTGSLRG 194          
BLAST of mRNA_L-elsbetiae_contig1768.4998.1 vs. uniprot
Match: A0A484EH94_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EH94_BRELC)

HSP 1 Score: 112 bits (281), Expect = 1.410e-26
Identity = 63/153 (41.18%), Postives = 91/153 (59.48%), Query Frame = 0
Query:   15 VSLLPSDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAKEGRIEDEMPHIHFDVKAKAQVFCPRPGHVLEGRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFDLTTREWRRGGGEVIAVGDDRKFVVTRMHEAAGLISMEGSL 167
            VSL P    D  AGI +N+   LM+Y+E L GV+L+ SE+        G I +EMP+IH  V A A VF P+ G +L G VNK+ S H+GML+ G+FN SVA   +  G+  + +   W    G  IAV +D +  V R+H A+G+I++E ++
Sbjct:   12 VSLSPCHAEDARAGIEQNLNDQLMQYSEPLKGVVLSFSEVQLDK--PYGVIVNEMPYIHCKVLADALVFRPKKGMILRGVVNKIGSNHIGMLIAGVFNGSVAGAELPVGYVHNYSQDCWLAKDGSSIAVENDVQVKVLRVHVASGMIAIEATM 162          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1768.4998.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDH5_9PHAE5.170e-10586.19RPA43_OB domain-containing protein n=2 Tax=Ectocar... [more]
A0A835Z8S8_9STRA6.710e-4243.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D057_9STRA1.050e-3540.70RPA43_OB domain-containing protein n=2 Tax=Monodop... [more]
A0A024G6Y8_9STRA1.610e-2834.68Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A2D4BXV9_PYTIN2.430e-2840.13S1 motif domain-containing protein n=1 Tax=Pythium... [more]
A0A1V9ZJD1_9STRA3.720e-2838.51RPA43_OB domain-containing protein n=1 Tax=Achlya ... [more]
A0A7S1XUY3_9STRA9.820e-2850.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6G0XIV8_9STRA2.320e-2738.92RPA43_OB domain-containing protein n=1 Tax=Aphanom... [more]
A0A058ZEH9_FONAL9.530e-2737.36RPA43_OB domain-containing protein n=1 Tax=Fonticu... [more]
A0A484EH94_BRELC1.410e-2641.18Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 211..231
NoneNo IPR availableGENE3D2.40.50.1060coord: 89..235
e-value: 2.8E-21
score: 78.4
NoneNo IPR availablePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 7..223
NoneNo IPR availablePANTHERPTHR12709:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43coord: 7..223
IPR041178RPA43, OB domainPFAMPF17875RPA43_OBcoord: 85..128
e-value: 1.7E-7
score: 31.9
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 1..88
e-value: 1.6E-6
score: 30.1
IPR005576RNA polymerase Rpb7-like , N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 14..83
e-value: 1.6E-7
score: 31.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1768contigL-elsbetiae_contig1768:12656..15197 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1768.4998.1mRNA_L-elsbetiae_contig1768.4998.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1768 12621..15796 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1768.4998.1 ID=prot_L-elsbetiae_contig1768.4998.1|Name=mRNA_L-elsbetiae_contig1768.4998.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=237bp
MATSPFEELDLKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNESLGGVLLA
VSELSFGDGAKEGRIEDEMPHIHFDVKAKAQVFCPRPGHVLEGRVNKVTS
THVGMLVCGIFNASVASESMGEGFRFDLTTREWRRGGGEVIAVGDDRKFV
VTRMHEAAGLISMEGSLEGLPKEEGGGGDGAESAAANPNKRRAAPEAMEE
DEAAAAAAAAAKAARKKAKKAAKLAAKASKKVKTEL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041178RPA43_OB
IPR036898RNA_pol_Rpb7-like_N_sf
IPR005576Rpb7-like_N