prot_L-elsbetiae_contig17670.4993.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig17670.4993.1
Unique Nameprot_L-elsbetiae_contig17670.4993.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length201
Homology
BLAST of mRNA_L-elsbetiae_contig17670.4993.1 vs. uniprot
Match: D8LDD4_ECTSI (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD4_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.680e-75
Identity = 142/204 (69.61%), Postives = 162/204 (79.41%), Query Frame = 0
Query:    1 MAPSLQQVCLGIL-GTILPQDARAWSVSLGVLPRHTARTSSHRCSSSPSSSAPPCMMAKDGDLVRVSLPKPLGIQLEEIASGSPGVRVAGLVEGGTAKENGEIGASMVLVELGGNDVTGSTFDSIMETLVTAPAGVPIDLVFRDPPAAXXXXXXXXPV--PAVAMGVPCDITVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGKV 201
            MAP+LQQ+ L  L G +LP DA  WS S G+    + R +    S+     A   MMAK+GDLVRVSLPKPLGIQLEE+  GSPGVRVAG+VEGGTAKE+GEIGA M+L+E+GG DVT + FD +M+TLV APAGVPIDLVFRDP AA XXXXXXX    PAVAMGVPC++TVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGK+
Sbjct:    1 MAPALQQLFLFFLSGALLPHDA--WSFSTGI---SSGRANPPAFSARSHGRAAMMMMAKEGDLVRVSLPKPLGIQLEEVVPGSPGVRVAGVVEGGTAKESGEIGADMILLEIGGKDVTSAMFDLVMDTLVAAPAGVPIDLVFRDPSAAAXXXXXXXXXXXPAVAMGVPCELTVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGKM 199          
BLAST of mRNA_L-elsbetiae_contig17670.4993.1 vs. uniprot
Match: A0A836CP36_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP36_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.480e-19
Identity = 61/141 (43.26%), Postives = 80/141 (56.74%), Query Frame = 0
Query:   62 LVRVSLPKPLGIQLEEIASGSP-GVRVAGLVEGGTAKENGEIGASMVLVELGGNDVTGSTFDSIMETLVTAPAGVPIDLVFRDPPAAXXXXXXXXPVPAVAMGVPCDITV-----GGVTLKAKTGDNLRKTLLAGKVEVYD 196
            +V VSLPKPLGI LEE+  G P GVRV  + EGG+A ++G++   MVLV L G D T   FD+IM+ L+ A    PI L F               +P      PC++ V       + LKA+ GDNLRK L+AGKV +Y+
Sbjct:   40 VVDVSLPKPLGIALEELQPGKPAGVRVQEVREGGSAIKSGDVLPGMVLVSLNGIDCTTKDFDTIMDMLIGATDSQPIQLSFS-------LEVDDEQIPQPIKTGPCELHVLLPKGETMVLKARNGDNLRKVLMAGKVSIYE 173          
BLAST of mRNA_L-elsbetiae_contig17670.4993.1 vs. uniprot
Match: A0A7S2W1W1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W1W1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.850e-7
Identity = 51/151 (33.77%), Postives = 74/151 (49.01%), Query Frame = 0
Query:   55 MMAKDGDLVRVSLPKPLGIQLEEIASG-SPGVRVAGLVEGGTA--KENGEIGASMVLVELGGNDVTGSTFDSIMETLVTAPAGVPID----LVFRDPPAAXXXXXXXXPVPAVAMGVPCDITVGGVTLK---AKTGDNLRKTLLAGKVEVY 195
            ++A     + + L KPLG+ LEE     + GV+V  LVE G+A   E  +    + + ++ G +V    FD +ME ++ +P+ V ID    L   D  A+        PV  +   V   +   G   K   AK G+NLRKTLL  KVEVY
Sbjct:   45 LLAVSNKFLSLELEKPLGMLLEENEENEAKGVKVEELVETGSAYASEYKDQLVGLKIAKVNGENVLNIGFDDVMERIIDSPSPVAIDFELELASSDLEASGDSEDPSVPVYDIGQTVTIRVIQEGSETKDIAAKVGNNLRKTLLENKVEVY 195          
BLAST of mRNA_L-elsbetiae_contig17670.4993.1 vs. uniprot
Match: K0QZ01_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZ01_THAOC)

HSP 1 Score: 59.3 bits (142), Expect = 4.280e-7
Identity = 57/184 (30.98%), Postives = 81/184 (44.02%), Query Frame = 0
Query:   41 HRCSSSPSS------------SAPPCMMAKDGDLVRVSLPKPLGIQLEEIASGSPGVRVAGLVEGGTAKE--------NGEIGASMVLVELGGNDVTGSTFDSIMETLVTAPAGVPIDLVFRDPPAAXXXXXXXXPVPAVAMGVPCDITVG--------GVTLKAKTGDNLRKTLLA-GKVEVY 195
            H C SS SS            S P   +    +++ ++L KPLG+ LEE   G  GV V  + EGG+A E          +IG+ M        DVT   FD +M  ++ AP+   I+ + +               P   +G    I V          +TL+AK GDNLRKTLL  G++E+Y
Sbjct:   39 HACESSSSSWRRRGATSRVRMSTPTGTVTDATEVLALTLEKPLGLILEESEDGIGGVIVQEVNEGGSAYECPAKDRLVQSKIGSVMK------EDVTTLGFDDVMSRIIDAPSPFEIEFIVKASEGEVSEGSEGEEAPTYEVGSTVSILVQQPAETKKPDITLEAKVGDNLRKTLLDHGEIELY 216          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17670.4993.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LDD4_ECTSI1.680e-7569.61PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CP36_9STRA2.480e-1943.262Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S2W1W1_9STRA1.850e-733.77Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
K0QZ01_THAOC4.280e-730.98Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.42.10coord: 55..155
e-value: 3.0E-9
score: 38.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..201
IPR001478PDZ domainPROSITEPS50106PDZcoord: 59..143
score: 8.647
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 62..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17670contigL-elsbetiae_contig17670:1775..3173 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17670.4993.1mRNA_L-elsbetiae_contig17670.4993.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig17670 1775..3173 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig17670.4993.1 ID=prot_L-elsbetiae_contig17670.4993.1|Name=mRNA_L-elsbetiae_contig17670.4993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=201bp
MAPSLQQVCLGILGTILPQDARAWSVSLGVLPRHTARTSSHRCSSSPSSS
APPCMMAKDGDLVRVSLPKPLGIQLEEIASGSPGVRVAGLVEGGTAKENG
EIGASMVLVELGGNDVTGSTFDSIMETLVTAPAGVPIDLVFRDPPAAAAA
AAAAAPVPAVAMGVPCDITVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGK
V
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf