mRNA_L-elsbetiae_contig17670.4993.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17670.4993.1
Unique NamemRNA_L-elsbetiae_contig17670.4993.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17670.4993.1 vs. uniprot
Match: D8LDD4_ECTSI (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD4_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.680e-75
Identity = 142/204 (69.61%), Postives = 162/204 (79.41%), Query Frame = 1 
Query:    1 MAPSLQQVCLGIL-GTILPQDARAWSVSLGVLPRHTARTSSHRCSSSPSSSAPPCMMAKDGDLVRVSLPKPLGIQLEEIASGSPGVRVAGLVEGGTAKENGEIGASMVLVELGGNDVTGSTFDSIMETLVTAPAGVPIDLVFRDPPAAXXXXXXXXPV--PAVAMGVPCDITVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGKV 603
            MAP+LQQ+ L  L G +LP DA  WS S G+    + R +    S+     A   MMAK+GDLVRVSLPKPLGIQLEE+  GSPGVRVAG+VEGGTAKE+GEIGA M+L+E+GG DVT + FD +M+TLV APAGVPIDLVFRDP AA XXXXXXX    PAVAMGVPC++TVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGK+
Sbjct:    1 MAPALQQLFLFFLSGALLPHDA--WSFSTGI---SSGRANPPAFSARSHGRAAMMMMAKEGDLVRVSLPKPLGIQLEEVVPGSPGVRVAGVVEGGTAKESGEIGADMILLEIGGKDVTSAMFDLVMDTLVAAPAGVPIDLVFRDPSAAAXXXXXXXXXXXPAVAMGVPCELTVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGKM 199
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BLAST of mRNA_L-elsbetiae_contig17670.4993.1 vs. uniprot
Match: A0A836CP36_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP36_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.480e-19
Identity = 61/141 (43.26%), Postives = 80/141 (56.74%), Query Frame = 1 
Query:  184 LVRVSLPKPLGIQLEEIASGSP-GVRVAGLVEGGTAKENGEIGASMVLVELGGNDVTGSTFDSIMETLVTAPAGVPIDLVFRDPPAAXXXXXXXXPVPAVAMGVPCDITV-----GGVTLKAKTGDNLRKTLLAGKVEVYD 588
            +V VSLPKPLGI LEE+  G P GVRV  + EGG+A ++G++   MVLV L G D T   FD+IM+ L+ A    PI L F               +P      PC++ V       + LKA+ GDNLRK L+AGKV +Y+
Sbjct:   40 VVDVSLPKPLGIALEELQPGKPAGVRVQEVREGGSAIKSGDVLPGMVLVSLNGIDCTTKDFDTIMDMLIGATDSQPIQLSFS-------LEVDDEQIPQPIKTGPCELHVLLPKGETMVLKARNGDNLRKVLMAGKVSIYE 173
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BLAST of mRNA_L-elsbetiae_contig17670.4993.1 vs. uniprot
Match: A0A7S2W1W1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W1W1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.850e-7
Identity = 51/151 (33.77%), Postives = 74/151 (49.01%), Query Frame = 1 
Query:  163 MMAKDGDLVRVSLPKPLGIQLEEIASG-SPGVRVAGLVEGGTA--KENGEIGASMVLVELGGNDVTGSTFDSIMETLVTAPAGVPID----LVFRDPPAAXXXXXXXXPVPAVAMGVPCDITVGGVTLK---AKTGDNLRKTLLAGKVEVY 585
            ++A     + + L KPLG+ LEE     + GV+V  LVE G+A   E  +    + + ++ G +V    FD +ME ++ +P+ V ID    L   D  A+        PV  +   V   +   G   K   AK G+NLRKTLL  KVEVY
Sbjct:   45 LLAVSNKFLSLELEKPLGMLLEENEENEAKGVKVEELVETGSAYASEYKDQLVGLKIAKVNGENVLNIGFDDVMERIIDSPSPVAIDFELELASSDLEASGDSEDPSVPVYDIGQTVTIRVIQEGSETKDIAAKVGNNLRKTLLENKVEVY 195
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BLAST of mRNA_L-elsbetiae_contig17670.4993.1 vs. uniprot
Match: K0QZ01_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZ01_THAOC)

HSP 1 Score: 59.3 bits (142), Expect = 4.280e-7
Identity = 57/184 (30.98%), Postives = 81/184 (44.02%), Query Frame = 1 
Query:  121 HRCSSSPSS------------SAPPCMMAKDGDLVRVSLPKPLGIQLEEIASGSPGVRVAGLVEGGTAKE--------NGEIGASMVLVELGGNDVTGSTFDSIMETLVTAPAGVPIDLVFRDPPAAXXXXXXXXPVPAVAMGVPCDITVG--------GVTLKAKTGDNLRKTLLA-GKVEVY 585
            H C SS SS            S P   +    +++ ++L KPLG+ LEE   G  GV V  + EGG+A E          +IG+ M        DVT   FD +M  ++ AP+   I+ + +               P   +G    I V          +TL+AK GDNLRKTLL  G++E+Y
Sbjct:   39 HACESSSSSWRRRGATSRVRMSTPTGTVTDATEVLALTLEKPLGLILEESEDGIGGVIVQEVNEGGSAYECPAKDRLVQSKIGSVMK------EDVTTLGFDDVMSRIIDAPSPFEIEFIVKASEGEVSEGSEGEEAPTYEVGSTVSILVQQPAETKKPDITLEAKVGDNLRKTLLDHGEIELY 216
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17670.4993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LDD4_ECTSI1.680e-7569.61PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CP36_9STRA2.480e-1943.262Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S2W1W1_9STRA1.850e-733.77Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
K0QZ01_THAOC4.280e-730.98Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17670contigL-elsbetiae_contig17670:1775..3173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.0
Seed ortholog evalue3.7e-60
Seed eggNOG ortholog2880.D8LDD4
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Domain present in PSD-95, Dlg, and ZO-1/2.
EggNOG OGs2DJ3Z@1,2S5ZV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-25_001670.1
Exons2
Model size603
Cds size603
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.6736093-CDS-L-elsbetiae_contig17670:1774..20741622815736.6736093-CDS-L-elsbetiae_contig17670:1774..2074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17670 1775..2074 +
1691683069.7869713-CDS-L-elsbetiae_contig17670:1774..20741691683069.7869713-CDS-L-elsbetiae_contig17670:1774..2074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17670 1775..2074 +
1622815736.6860557-CDS-L-elsbetiae_contig17670:2870..31731622815736.6860557-CDS-L-elsbetiae_contig17670:2870..3173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17670 2871..3173 +
1691683069.8039243-CDS-L-elsbetiae_contig17670:2870..31731691683069.8039243-CDS-L-elsbetiae_contig17670:2870..3173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17670 2871..3173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17670.4993.1prot_L-elsbetiae_contig17670.4993.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17670 1775..3173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17670.4993.1

>prot_L-elsbetiae_contig17670.4993.1 ID=prot_L-elsbetiae_contig17670.4993.1|Name=mRNA_L-elsbetiae_contig17670.4993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=201bp
MAPSLQQVCLGILGTILPQDARAWSVSLGVLPRHTARTSSHRCSSSPSSS
APPCMMAKDGDLVRVSLPKPLGIQLEEIASGSPGVRVAGLVEGGTAKENG
EIGASMVLVELGGNDVTGSTFDSIMETLVTAPAGVPIDLVFRDPPAAAAA
AAAAAPVPAVAMGVPCDITVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGK
V
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mRNA from alignment at L-elsbetiae_contig17670:1775..3173+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17670.4993.1 ID=mRNA_L-elsbetiae_contig17670.4993.1|Name=mRNA_L-elsbetiae_contig17670.4993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1399bp|location=Sequence derived from alignment at L-elsbetiae_contig17670:1775..3173+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCCATCTCTGCAGCAGGTATGCCTCGGTATCCTTGGAACGATACT
GCCTCAAGATGCCCGGGCGTGGTCGGTGTCCCTGGGTGTTCTGCCCCGGC
ATACGGCGAGGACGTCGAGTCACCGCTGTAGCAGCAGCCCATCATCATCA
GCTCCGCCGTGCATGATGGCTAAGGACGGCGACCTGGTGCGGGTGTCGCT
GCCGAAGCCGTTGGGGATCCAGCTGGAGGAAATCGCGTCAGGGTCTCCGG
GGGTGCGGGTGGCGGGGTTGGTGGAAGGAGGGACGGCTAAGGAGAACGGC
GTGAGTGCTCCATTTTAATAATATGTGCGGGCTGACTGGACGTTCTCTTC
GTTTTCTGTGTCGCCGGGCATGAGTTCATCTTCCTATGCACTGCATATAC
CTATTCGCCATCAAGCTAAGGAATGGTTGAGAAGGGAGTTGTTGACTGGC
ATATGTATGCATGTTTATTCCACGGGTATTCTAGTGTAGTTGTTGGTTTG
ATGCATTTTGACGTTGTATATCACCCCCCCCCTCGCTGGACCGTCGGCCG
CGCGGTTCTTCCCCCGCCTCTTGATGTGTAGATAACTCTACATACCGGGC
CCATATTCCTCGCTACAGCAGCAGACGAGTAGCATAGCAGAAGTGTATCG
CAACCGTCGCACACCAAAACACCGTCTAGAAAAGCACAGGAGAGCTGCTC
CGTTTGCGTGGGCCGGGGTCGTCCCGTGTGGCATCGAAAACGAACCCCGC
ATCTGTCACACACGACGCACACCATGTTCCCAAAAGGATCAGGCCGCTAC
TAAATAGTGCTGTACGATAAATTTAGACAGCAGCAGAGCACCGATACCAA
AACAAACCTTCCAATCCATTACTTCGTCTTCCCCACTGGTCCCCTCCCTC
CACTACGACCAGCTAGATGCGACCCCACCGGGGTCACACATGAGGGGGGG
GGTTGGACCAAAATAGTCTCGGGAGGAGGGGTCCATGTTTGATTTTTACA
ACAAAAACGCCCCCCCTTGCGACAACAACAACAACAACAACGACTTCTAC
ATGCATACCTGCTGCACACCTGCTGCATTGTATACTAAATACATAGGAAA
TTGGAGCGAGCATGGTGCTCGTCGAGCTCGGCGGGAATGACGTCACCGGG
TCAACCTTCGACTCGATCATGGAAACCCTCGTGACCGCTCCGGCCGGCGT
GCCCATCGACCTCGTCTTCAGAGACCCACCCGCAGCAGCAGCAGCAGCAG
CGGCGGCGGCGCCGGTACCGGCTGTGGCGATGGGAGTTCCCTGCGATATC
ACCGTTGGAGGCGTCACGCTCAAGGCGAAGACGGGGGACAATCTCCGGAA
GACGCTGCTCGCCGGGAAGGTGGAGGTGTACGACATGGTCGGGAAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17670:1775..3173+

>mRNA_L-elsbetiae_contig17670.4993.1 ID=mRNA_L-elsbetiae_contig17670.4993.1|Name=mRNA_L-elsbetiae_contig17670.4993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig17670:1775..3173+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCCATCTCTGCAGCAGGTATGCCTCGGTATCCTTGGAACGATACT
GCCTCAAGATGCCCGGGCGTGGTCGGTGTCCCTGGGTGTTCTGCCCCGGC
ATACGGCGAGGACGTCGAGTCACCGCTGTAGCAGCAGCCCATCATCATCA
GCTCCGCCGTGCATGATGGCTAAGGACGGCGACCTGGTGCGGGTGTCGCT
GCCGAAGCCGTTGGGGATCCAGCTGGAGGAAATCGCGTCAGGGTCTCCGG
GGGTGCGGGTGGCGGGGTTGGTGGAAGGAGGGACGGCTAAGGAGAACGGC
ATGGCGCCATCTCTGCAGCAGGTATGCCTCGGTATCCTTGGAACGATACT
GCCTCAAGATGCCCGGGCGTGGTCGGTGTCCCTGGGTGTTCTGCCCCGGC
ATACGGCGAGGACGTCGAGTCACCGCTGTAGCAGCAGCCCATCATCATCA
GCTCCGCCGTGCATGATGGCTAAGGACGGCGACCTGGTGCGGGTGTCGCT
GCCGAAGCCGTTGGGGATCCAGCTGGAGGAAATCGCGTCAGGGTCTCCGG
GGGTGCGGGTGGCGGGGTTGGTGGAAGGAGGGACGGCTAAGGAGAACGGC
GAAATTGGAGCGAGCATGGTGCTCGTCGAGCTCGGCGGGAATGACGTCAC
CGGGTCAACCTTCGACTCGATCATGGAAACCCTCGTGACCGCTCCGGCCG
GCGTGCCCATCGACCTCGTCTTCAGAGACCCACCCGCAGCAGCAGCAGCA
GCAGCGGCGGCGGCGCCGGTACCGGCTGTGGCGATGGGAGTTCCCTGCGA
TATCACCGTTGGAGGCGTCACGCTCAAGGCGAAGACGGGGGACAATCTCC
GGAAGACGCTGCTCGCCGGGAAGGTGGAGGTGTACGACATGGTCGGGAAG
GTGGAAATTGGAGCGAGCATGGTGCTCGTCGAGCTCGGCGGGAATGACGT
CACCGGGTCAACCTTCGACTCGATCATGGAAACCCTCGTGACCGCTCCGG
CCGGCGTGCCCATCGACCTCGTCTTCAGAGACCCACCCGCAGCAGCAGCA
GCAGCAGCGGCGGCGGCGCCGGTACCGGCTGTGGCGATGGGAGTTCCCTG
CGATATCACCGTTGGAGGCGTCACGCTCAAGGCGAAGACGGGGGACAATC
TCCGGAAGACGCTGCTCGCCGGGAAGGTGGAGGTGTACGACATGGTCGGG
AAGGTG
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