prot_L-elsbetiae_contig1670.4527.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1670.4527.1
Unique Name	prot_L-elsbetiae_contig1670.4527.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	161

Homology

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BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: A0A141BSM5_9PHAE (30S ribosomal protein S5, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM5_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 9.720e-70
Identity = 109/159 (68.55%), Postives = 137/159 (86.16%), Query Frame = 0

Query:    1 MITQHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 159
            +I + R+VK+SR+SKVVKGGKKI+FR  +V G+  + VGVGVGKAKE+  A++KA  ++KKN+IN+P+ +G+TIPHS+IG AG SK+FIRPA++GTGVIAG SVRIVLELAGIKNIL+KQLGSNN LNNARATI ALK L+TI+QVI+ RQIS EQ+ G
Sbjct:    8 IIWEQRVVKVSRVSKVVKGGKKISFRATVVIGDMEQKVGVGVGKAKEVSIAVKKAETDAKKNIINIPVAEGKTIPHSMIGVAGGSKIFIRPAVQGTGVIAGGSVRIVLELAGIKNILSKQLGSNNPLNNARATIMALKDLTTIEQVIQKRQISFEQIIG 166

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BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: A0A0S0GN90_COSCS (30S ribosomal protein S5, chloroplastic n=30 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GN90_COSCS)

HSP 1 Score: 213 bits (541), Expect = 4.590e-68
Identity = 107/156 (68.59%), Postives = 135/156 (86.54%), Query Frame = 0

Query:    4 QHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 159
            + R+VKISR+SKVVKGGKKI+FR  +V G+  + VGVGVGKA+E+  AI+KA  ++KKN++ +PI++G+TIPH+++G AG SKVFIRPA+ GTGVIAG SVRIVLELAGIKNIL+KQLGSNN LNNARATI ALK L+TI+QV++ RQISLEQ+ G
Sbjct:   11 EQRVVKISRVSKVVKGGKKISFRATVVVGDMEERVGVGVGKAEEVSTAIKKAETDAKKNVLTIPIVEGKTIPHAMVGIAGGSKVFIRPAVPGTGVIAGGSVRIVLELAGIKNILSKQLGSNNPLNNARATIVALKSLNTIEQVMQKRQISLEQMLG 166

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BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: A0A8E6D2P2_9PHAE (30S ribosomal protein S5, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D2P2_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 2.060e-67
Identity = 103/156 (66.03%), Postives = 130/156 (83.33%), Query Frame = 0

Query:    4 QHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 159
            + R+VKI+R+SKVVKGGKK++FR  +V+GN N +VGVG+GKA+E   AI+KA  N+KKNL+ VP++KGQTIPHSIIG  G  KVFIRPA+ GTGVIAG +VR+VLELAG+KNIL+KQLGSNNALNNARAT+  LK +  I Q+ + RQIS+EQ+ G
Sbjct:   14 EKRVVKIARVSKVVKGGKKLSFRATLVTGNRNGLVGVGIGKAEETALAIKKAEVNAKKNLVKVPLVKGQTIPHSIIGNTGGCKVFIRPAVPGTGVIAGGAVRVVLELAGVKNILSKQLGSNNALNNARATVIGLKNIKAIGQIAQKRQISIEQVLG 169

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BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: D1GJR6_FUCVE (30S ribosomal protein S5, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJR6_FUCVE)

HSP 1 Score: 209 bits (532), Expect = 1.070e-66
Identity = 105/159 (66.04%), Postives = 134/159 (84.28%), Query Frame = 0

Query:    1 MITQHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 159
            +I + R+VK+SR+SKVVKGGKKI+FR  +V G+    VGVGVGKAKE+  A++KA  ++KKN+IN+PI++G+TIPHS+IG AG SKVFIRPA+ GTGVIAG SVRIVLELAG+KNIL++QLGSNN LNNARATI ALK L+T+ +VI+ R+I  EQ+ G
Sbjct:    8 IIWEQRVVKVSRVSKVVKGGKKISFRATVVVGDMEDKVGVGVGKAKEVSTAVKKAETDAKKNVINIPIVEGKTIPHSMIGIAGGSKVFIRPAVPGTGVIAGGSVRIVLELAGVKNILSEQLGSNNPLNNARATILALKDLTTVQRVIQKRKIPFEQILG 166

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BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: A0A8F0JXK8_9PHAE (Ribosomal protein S5 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXK8_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.150e-66
Identity = 108/159 (67.92%), Postives = 134/159 (84.28%), Query Frame = 0

Query:    1 MITQHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 159
            ++ + R+VKISR+SKVVKGGKKI+FR  +V G+    VGVG+GKA+E+  AI+KA  +++KN+INVPI +G+TIPH IIG  G SKVFIRPA+ GTGVIAGSSVRIVLELAGIKNIL+KQLGSNNALNNARATI  L+KL T+ ++++ RQISLEQL G
Sbjct:    8 IVWEKRVVKISRVSKVVKGGKKISFRATVVVGDMEGKVGVGIGKAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPIIGIDGGSKVFIRPAVPGTGVIAGSSVRIVLELAGIKNILSKQLGSNNALNNARATIVGLEKLITVKEILEKRQISLEQLLG 166

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BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: A0A7T8JJZ4_SCYLO (30S ribosomal protein S5, chloroplastic n=7 Tax=Ectocarpales TaxID=2877 RepID=A0A7T8JJZ4_SCYLO)

HSP 1 Score: 202 bits (514), Expect = 7.380e-64
Identity = 106/156 (67.95%), Postives = 129/156 (82.69%), Query Frame = 0

Query:    4 QHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 159
            + R+VK+SR+SKVVKGGKKI+FR  +V G+    VGVGVGKA+E+  AI+KA  +++KN+I VPI +G+TIPH+ +G    SKVFIRPA+ GTGVIAG SVRIVLELAGIKNIL+KQLGSNN LNNARATITALK L TI QV++ RQISLEQ+ G
Sbjct:   18 EKRVVKVSRVSKVVKGGKKISFRATVVVGDMEYQVGVGVGKAEEVSTAIKKAETDARKNVIIVPIAEGKTIPHATVGVECGSKVFIRPAVPGTGVIAGGSVRIVLELAGIKNILSKQLGSNNPLNNARATITALKSLDTIKQVMEKRQISLEQVLG 173

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BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: A0A1I9LVF8_9PHAE (30S ribosomal protein S5, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVF8_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 2.470e-63
Identity = 107/157 (68.15%), Postives = 130/157 (82.80%), Query Frame = 0

Query:    4 QHRIVKISRISKVVKGGKKINFRVIIVSGN-ENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 159
            + R+VKISR+SKVVKGGKKI+FR  +V G+ E K VGVGVGKAK++  A++KA  +  KN+INV I +G+TIPH+  G    SKVFIRPA+ GTGVIAG SVRIVLELAGIKNIL+KQLGSNN+LNNAR+TITALK LST+ QV++ RQISLEQ+ G
Sbjct:   11 EKRVVKISRVSKVVKGGKKISFRATVVVGDIEKKQVGVGVGKAKDVSTAVKKAETDGIKNVINVQIAEGKTIPHATFGIECGSKVFIRPAVPGTGVIAGGSVRIVLELAGIKNILSKQLGSNNSLNNARSTITALKSLSTVKQVMEKRQISLEQVLG 167

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BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: A0A2I4Q2I9_9PHAE (30S ribosomal protein S5, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2I9_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 2.470e-63
Identity = 104/156 (66.67%), Postives = 127/156 (81.41%), Query Frame = 0

Query:    4 QHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 159
            + R+VK+SR+SKVVKGGKKI+FR  +V G++   VGVG+GKA E+ +AI+KA  N+KKN+I + +  GQTI HSI+G AG SKVFIRPA+ GTGVIAG SVR VLELAGIKNIL+KQLGSNNALNNARATI  L+ L+T  +VIK RQIS+E L G
Sbjct:   12 EKRVVKVSRVSKVVKGGKKISFRATVVIGDKKNKVGVGMGKAVEVSNAIKKAETNAKKNVITITVESGQTISHSILGAAGGSKVFIRPAVPGTGVIAGGSVRSVLELAGIKNILSKQLGSNNALNNARATINGLRNLNTKAEVIKKRQISVEHLLG 167

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BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: B7T1W8_VAULI (30S ribosomal protein S5, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1W8_VAULI)

HSP 1 Score: 192 bits (489), Expect = 7.540e-60
Identity = 99/154 (64.29%), Postives = 125/154 (81.17%), Query Frame = 0

Query:    4 QHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQL 157
            + R+V+ISR+ KVVKGGKK++FR  ++ GN+N  VGVGVGKA E+  AI+KA+N+++KNLI +P+ K +TIPH+IIG  G+SKV IR A  GTGVIAGSS+RIVLEL G++NIL KQLG NN LNNARATI ALK L TI QV + R+ISLE+L
Sbjct:   31 EQRVVQISRVVKVVKGGKKLSFRATVIIGNKNSHVGVGVGKADEVSTAIQKAVNHARKNLIQIPLTKTKTIPHNIIGIDGASKVLIRTAGPGTGVIAGSSIRIVLELVGVQNILAKQLGGNNLLNNARATIAALKGLKTIHQVAQEREISLEKL 184

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BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: UPI001FCDE024 (ribosomal protein S5 n=1 Tax=Glaucosphaera vacuolata TaxID=38265 RepID=UPI001FCDE024)

HSP 1 Score: 186 bits (471), Expect = 2.540e-57
Identity = 90/154 (58.44%), Postives = 124/154 (80.52%), Query Frame = 0

Query:    4 QHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQL 157
            Q ++V+I R++KVVKGGKK+NFR I+V GNE   VGVGVGKA +++ A++K + ++KK++I +P+ K ++IPH + GK+GS+ V I+P+  G+GVIAGSS+R VLELAG++NIL KQLGSNN LNNARATI AL+KL T  +V +NR I +EQL
Sbjct:   18 QEKVVQIRRVTKVVKGGKKLNFRAIVVIGNEKDKVGVGVGKASDVIGAVKKGVADAKKHIITIPLTKYKSIPHLMYGKSGSASVLIKPSAPGSGVIAGSSIRTVLELAGVQNILAKQLGSNNPLNNARATIDALQKLRTFSEVARNRDIVVEQL 171

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A141BSM5_9PHAE	9.720e-70	68.55	30S ribosomal protein S5, chloroplastic n=13 Tax=S...	[more]
A0A0S0GN90_COSCS	4.590e-68	68.59	30S ribosomal protein S5, chloroplastic n=30 Tax=P...	[more]
A0A8E6D2P2_9PHAE	2.060e-67	66.03	30S ribosomal protein S5, chloroplastic n=1 Tax=Is...	[more]
D1GJR6_FUCVE	1.070e-66	66.04	30S ribosomal protein S5, chloroplastic n=3 Tax=Fu...	[more]
A0A8F0JXK8_9PHAE	1.150e-66	67.92	Ribosomal protein S5 n=1 Tax=Protohalopteris sp. T...	[more]
A0A7T8JJZ4_SCYLO	7.380e-64	67.95	30S ribosomal protein S5, chloroplastic n=7 Tax=Ec...	[more]
A0A1I9LVF8_9PHAE	2.470e-63	68.15	30S ribosomal protein S5, chloroplastic n=1 Tax=Pl...	[more]
A0A2I4Q2I9_9PHAE	2.470e-63	66.67	30S ribosomal protein S5, chloroplastic n=1 Tax=Di...	[more]
B7T1W8_VAULI	7.540e-60	64.29	30S ribosomal protein S5, chloroplastic n=1 Tax=Va...	[more]
UPI001FCDE024	2.540e-57	58.44	ribosomal protein S5 n=1 Tax=Glaucosphaera vacuola...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.20		coord: 3..65 e-value: 5.6E-22 score: 79.4
None	No IPR available	PANTHER	PTHR13718:SF94	30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC	coord: 4..157
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 5..68
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 80..150 e-value: 1.9E-26 score: 91.3
IPR005712	Ribosomal protein S5, bacterial-type	TIGRFAM	TIGR01021	TIGR01021	coord: 4..155 e-value: 1.1E-57 score: 192.2
IPR005712	Ribosomal protein S5, bacterial-type	HAMAP	MF_01307_B	Ribosomal_S5_B	coord: 1..156 score: 29.633
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 68..160 e-value: 7.4E-34 score: 117.2
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 4..67 e-value: 8.4E-22 score: 76.9
IPR013810	Ribosomal protein S5, N-terminal	PROSITE	PS50881	S5_DSRBD	coord: 3..66 score: 21.774
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 4..157
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 72..150

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1670	contig	L-elsbetiae_contig1670:15687..16169 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1670.4527.1	mRNA_L-elsbetiae_contig1670.4527.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1670 15687..16169 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1670.4527.1 ID=prot_L-elsbetiae_contig1670.4527.1|Name=mRNA_L-elsbetiae_contig1670.4527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MITQHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVD
AIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIA
GSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNR
QISLEQLSGT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005324	Ribosomal_S5_C
IPR005712	Ribosomal_S5_bac-type
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR013810	Ribosomal_S5_N
IPR000851	Ribosomal_S5
IPR020568	Ribosomal_S5_D2-typ_fold